These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4830#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 532 fasta sequence [GAAATTGACACAAATAGCATGACCATAGTCAAT-CCTCAACTATCTCAAGTCCATTCGCTTCGTTTTCTTTCAGTGCCACTGCTTCTTTTGATGTACAGAGTCCATCAAGGATAGAGGTCCAATTCAAAGAGGGAAGCTTTCAGCCACCGAAGATATCATCATCGGTAGACCTACCTGCAGAGGTTGATATATTTGG-GCAGAAGATCAGCTTGGGCCCAGTCCAGCAGGTGCTGAACCCTCTGCAGCAAGCCTTTGCAAGTATTGCAGGATCCA-TTTCTGGGCAGCCACCCCTCAAGTTACCCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGA-CAAGGACCTCAGGATCTCCA-GAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTACTAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATCATTTACCCCCCCCTGAAAAATACACTAGCAGCTGCTTAGT-ACAGTAAAAAAAAAA] [+] EMBL BI810203 [GAAATTGACACAAATAGCATGACCATAGTCAAT CCTCAACTATCTCAAGTCCATTCGCTTCGTTTTCTTTCAGTGCCACTGCTTCTTTTGATGTACAGAGTCCATCAAGGATAGAGGTCCAATTCAAAGAGGGAAGCTTTCAGCCACCGAAGATATCATCATCGGTAGACCTACCTGCAGAGGTTGATATATTTGG GCAGAAGATCAGCTTGGGCCCAGTCCAGCAGGTGCTGAACCCTCTGCAGCAAGCCTTTGCAAGTATTGCAGGATCCA TTTCTGGGCAGCCACCCCTCAAGTTACCCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGA CAAGGACCTCAGGATCTCCA GAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTACTAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATCATTTACCCCCCCCTGAAAAATACACTAGCAGCTGCTTAGT ACAGTAAAAAAAA ] [+] EMBL BI807855 [ AGTCAATGCCTCAACTATCTCAAGTCCATTCGCTTCGTTTTCTTTCAGTGCCCCTGCTTCTTTTGATGTACAGAGTCCATCAAGGATAGAGGTCCCATTCAAAGAGGGAAGCTTTCA CCCCCGAAGATATCATCATCGGTAGACCTACCTGCAGAGGTTGATATATTTGGCGCAGAAGATCAGCTTGGGCCCAGTCCAGCAGGTGCTGAACCCTCTGCAGCAAGCCTTTGCAAGTATTGCAGGATCCACTTTCT GGCAGCCACCCCTCAAGTTACCCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGACCCAGGACCTCAGGATCTCCACGAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTACTAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATCATTTA CCCCCCCTGAAAAATACCCTACCA CTGCTTAGTCCCAGTAAAAAAAAAA] consensusID : consensus_4830#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [GGGCCCAGTCCAGCNGGTGCTGAACCCTCTGCAGCAAGCCTTTGCAAGTATTGCNGGATCCATTTCTGGGCAGCCACCCCTCAAGTTACCCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGACAAGGNCCTCAGGATCTCCAGAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTACTAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATNNTTTACCCAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU029625 [GGGCCCAGTCCAGCNGGTGCTGAACCCTCTGCAGCAAGCCTTTGCAAGTATTGCNGGATCCATTTCTGGGCAGCCACCCCTCAAGTTACCCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGACAAGGNCCTCAGGATCTCCAGAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTACTAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATNNTTTACCCAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4830#0 GAAATTGACACAAATAGCATGACCATAGTCAATCCTCAACTATCTCAAGTCCATTCGCTT 60 consensus_4830#1 ------------------------------------------------------------ consensus_4830#0 CGTTTTCTTTCAGTGCCACTGCTTCTTTTGATGTACAGAGTCCATCAAGGATAGAGGTCC 120 consensus_4830#1 ------------------------------------------------------------ consensus_4830#0 AATTCAAAGAGGGAAGCTTTCAGCCACCGAAGATATCATCATCGGTAGACCTACCTGCAG 180 consensus_4830#1 ------------------------------------------------------------ consensus_4830#0 AGGTTGATATATTTGGGCAGAAGATCAGCTTGGGCCCAGTCCAGCAGGTGCTGAACCCTC 240 consensus_4830#1 -------------------------------GGGCCCAGTCCAGCNGGTGCTGAACCCTC 29 ************** ************** consensus_4830#0 TGCAGCAAGCCTTTGCAAGTATTGCAGGATCCATTTCTGGGCAGCCACCCCTCAAGTTAC 300 consensus_4830#1 TGCAGCAAGCCTTTGCAAGTATTGCNGGATCCATTTCTGGGCAGCCACCCCTCAAGTTAC 89 ************************* ********************************** consensus_4830#0 CCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGACAAGGACC 360 consensus_4830#1 CCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGACAAGGNCC 149 ********************************************************* ** consensus_4830#0 TCAGGATCTCCAGAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTAC 420 consensus_4830#1 TCAGGATCTCCAGAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTAC 209 ************************************************************ consensus_4830#0 TAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATCATT 480 consensus_4830#1 TAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATNNTT 269 ******************************************************** ** consensus_4830#0 TACCCCCCCCTGAAAAATACACTAGCAGCTGCTTAGTACAGTAAAAAAAAAA 532 consensus_4830#1 TACCCAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 298 ***** ***** * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||