These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4842#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2202 fasta sequence [ACCCACCCGCGCCCCAAATCACGAGGAGGCGAAGCCGCCCATCTCATCGCCGGAGCTCGCGAATTCGCCGCCGCGATTCCGACCACCGCCGCGCCGGCGCCCGCGCCCGCTACGGTACTCCGCCGCCGTGCTGAGATCGCCGGGGGAGCCATGTCGCGGTCCCTGAGCATGAGGTCGTCGATGAGCATGAGGTCGCGCCGCGACCTGCCTCCTCCCCAGCAGACAATCGAAAAGCTTGAGAATATGGTGGCTGAAGGAAATTATTATGAAGCCCAACAAATGTACAAGTCAACCGGTGCAAGGTATATTGCTGCTCAGAAGTATTTGGAAGCCTTGGACATCCTTCAGTCAGGAGCTTTAGTTCAACTGAAGCATGGGCAGGTTCTATCAAAGCTAAATTTCATAGATCTAAGTAAAAAAAAAATATTCGCTACATTTGATGGCAAAGTAACACCCCTCCCAAAAGAAAAGAGAAGAGAGAGCCAACCAAAAGCTCATTGCTCCCTTCGTAACGATTTGTTGCAACCAGCCAATGGACCTTGACGTGTTCATTTGAAGTTGTTTTTTTAATGTGTGTATTGTCGATGTGGTGGTAGTGATTCACATCTTATTATGGGATGTTTTTATTGGGTGCTATGCTGTAGTTACATACATGTGTTATCCTAGATTGGTGTTTTATATCATTTTAAACCTTCACATTTTTGCCTTATTGGTTAAAAATTCCTGATTTCAGGTAACTTGTGGTGGTGAACTTGCTATAATGTTTGTGGACACCCTTGTCAAGGCAGCGCTTCCTTATAATGAAGAAACCTTTGATCGTATCAGAAAGATGTACGACGCCTTCCCCAGGATATCTGTTCCACACTTCCTTGGAGATGATTATGATGACGACGGGCAGAAATTATCCGAAGCTATTTCTGCAGCAAAAGTGCGTTCTGAGAGTTGTTCATCATTCCTGAGAGCTGCTATCAGGTGGTCTGCTGAGGTTGGGGCATCAAGAAGTGGATCTCCTGAGCTGCATGTTATGTTGGCGGAATACATATATTCTGAATCTCCAGAAACGGACATGACTAAAGTGTCAAGTCATTTTGTGAGGGGAAATGATCCTAAAAAGTTTGCCTCTATGCTGGCGAACTTTATGGGAAAGGTAATGGTTTTTAGAAAATAATTGATAATAGACTTGCAGCTGATGATTGTCTAATGCCAAATTCTATTGAACTGTTACATTCTTCTGTTCTCTGAGCAATGATTAAAATGTCTTATCTGAATATGATCAGTAGGTTCACATTCTTTACAACAATTTTCATTTTACAACGGGTCTCTTGCTTATAGTTTTTATTTGAGTTGGAGGTCATCCTTCTCCGAAAATAGAAACACGGTGCCAGCAAGTGATTGTTCAATCAGTTATCTATATCCATTTTTGGGTTGGATTATTTCAAGACCAACATAATCTTCGTGTAAAGCAGTATTCATAGATGTTTTTTCTCAATCAAAAAAATATTTTTATTAATATTTTTCTTACTGCACAGTGCTACCCTGGTGAAGATGATACTGCAATAGCACGTGGTGTCCTAATGTATCTATCACAAGGGAATCTTAGGGATGCAAATTTGCTCATGGACGAGCTGAAGGATCAACTAAAATCTGCTGACTTGGAAATCCCCAAAACAGATTTAATTCAGTTCATCAAGTATCTCTTACCGACGCTCGAAAGAGATGCTTACCCTCTTTTCAGGACACTGCGGCAGAAGTACAAGACAAGTACAGATCACGACCCTGTATTTGAGGAGTTATTAGATGAAATAGCCGCAAAATTTTATGGAATACGGAGCCAGAGCGCTTTGGAAGGACTTTTTGGTGATATGTTCAGGGTATAATGATGAGAAAAGGATTTCGTCATAAATATTCCAGCACAAAGCTCCCGACGCGCATTTCGTTCGCTAATACAAATTGCTGCTGGAAGATGAACACCCGGCCCGGCCCGAAAAGAGCATAAGAAAAAGTTCTGTTGCTGCCTTCCTCAGCCTTGATTATCCTGAGGCCATACATTTAGCTCCAAACTGCATATGATGATATATGCTCCAGTTACCACTGATCTCTTGTAAAACCATTCAACTGTTTTGCTCGTATCATGGTCGTGTTCTAATGATATTACTATTCTTTAACATTTTTTGTAGTTCCAGTTTTGCAGTTTTAAAACGG] [+] EMBL AK066699 [ACCCACCCGCGCCCCAAATCACGAGGAGGCGAAGCCGCCCATCTCATCGCCGGAGCTCGCGAATTCGCCGCCGCGATTCCGACCACCGCCGCGCCGGCGCCCGCGCCCGCTACGGTACTCCGCCGCCGTGCTGAGATCGCCGGGGGAGCCATGTCGCGGTCCCTGAGCATGAGGTCGTCGATGAGCATGAGGTCGCGCCGCGACCTGCCTCCTCCCCAGCAGACAATCGAAAAGCTTGAGAATATGGTGGCTGAAGGAAATTATTATGAAGCCCAACAAATGTACAAGTCAACCGGTGCAAGGTATATTGCTGCTCAGAAGTATTTGGAAGCCTTGGACATCCTTCAGTCAGGAGCTTTAGTTCAACTGAAGCATGGGCAGGTTCTATCAAAGCTAAATTTCATAGATCTAAGTAAAAAAAAAATATTCGCTACATTTGATGGCAAAGTAACACCCCTCCCAAAAGAAAAGAGAAGAGAGAGCCAACCAAAAGCTCATTGCTCCCTTCGTAACGATTTGTTGCAACCAGCCAATGGACCTTGACGTGTTCATTTGAAGTTGTTTTTTTAATGTGTGTATTGTCGATGTGGTGGTAGTGATTCACATCTTATTATGGGATGTTTTTATTGGGTGCTATGCTGTAGTTACATACATGTGTTATCCTAGATTGGTGTTTTATATCATTTTAAACCTTCACATTTTTGCCTTATTGGTTAAAAATTCCTGATTTCAGGTAACTTGTGGTGGTGAACTTGCTATAATGTTTGTGGACACCCTTGTCAAGGCAGCGCTTCCTTATAATGAAGAAACCTTTGATCGTATCAGAAAGATGTACGACGCCTTCCCCAGGATATCTGTTCCACACTTCCTTGGAGATGATTATGATGACGACGGGCAGAAATTATCCGAAGCTATTTCTGCAGCAAAAGTGCGTTCTGAGAGTTGTTCATCATTCCTGAGAGCTGCTATCAGGTGGTCTGCTGAGGTTGGGGCATCAAGAAGTGGATCTCCTGAGCTGCATGTTATGTTGGCGGAATACATATATTCTGAATCTCCAGAAACGGACATGACTAAAGTGTCAAGTCATTTTGTGAGGGGAAATGATCCTAAAAAGTTTGCCTCTATGCTGGCGAACTTTATGGGAAAGGTAATGGTTTTTAGAAAATAATTGATAATAGACTTGCAGCTGATGATTGTCTAATGCCAAATTCTATTGAACTGTTACATTCTTCTGTTCTCTGAGCAATGATTAAAATGTCTTATCTGAATATGATCAGTAGGTTCACATTCTTTACAACAATTTTCATTTTACAACGGGTCTCTTGCTTATAGTTTTTATTTGAGTTGGAGGTCATCCTTCTCCGAAAATAGAAACACGGTGCCAGCAAGTGATTGTTCAATCAGTTATCTATATCCATTTTTGGGTTGGATTATTTCAAGACCAACATAATCTTCGTGTAAAGCAGTATTCATAGATGTTTTTTCTCAATCAAAAAAATATTTTTATTAATATTTTTCTTACTGCACAGTGCTACCCTGGTGAAGATGATACTGCAATAGCACGTGGTGTCCTAATGTATCTATCACAAGGGAATCTTAGGGATGCAAATTTGCTCATGGACGAGCTGAAGGATCAACTAAAATCTGCTGACTTGGAAATCCCCAAAACAGATTTAATTCAGTTCATCAAGTATCTCTTACCGACGCTCGAAAGAGATGCTTACCCTCTTTTCAGGACACTGCGGCAGAAGTACAAGACAAGTACAGATCACGACCCTGTATTTGAGGAGTTATTAGATGAAATAGCCGCAAAATTTTATGGAATACGGAGCCAGAGCGCTTTGGAAGGACTTTTTGGTGATATGTTCAGGGTATAATGATGAGAAAAGGATTTCGTCATAAATATTCCAGCACAAAGCTCCCGACGCGCATTTCGTTCGCTAATACAAATTGCTGCTGGAAGATGAACACCCGGCCCGGCCCGAAAAGAGCATAAGAAAAAGTTCTGTTGCTGCCTTCCTCAGCCTTGATTATCCTGAGGCCATACATTTAGCTCCAAACTGCATATGATGATATATGCTCCAGTTACCACTGATCTCTTGTAAAACCATTCAACTGTTTTGCTCGTATCATGGTCGTGTTCTAATGATATTACTATTCTTTAACATTTTTTGTAGTTCCAGTTTTGCAGTTTTAAAACGG] [+] EMBL AA750105 [ ATTAGATGAAATAGCCGCAAAATTTTATGGAATACGGAGCCAGAGCGCTTTGGAAGGACTTTTTGGTGATATGTTCAGGGTATAATNATGAGAAAAGGATTTCGTCATAAATATTCCAGCACAAAGCT CCGACNCGCATTTCG TCGCTAATACAAA TGCTACTGGAAGA GAACA CCGGCCCGAACCGAAA ] consensusID : consensus_4842#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence [CGCGGTCCGAGGACACTGCGGCAGTAAGTGTCCTGAAAAGAGGCGTAAGCGATCTCTTGTTCAGGACACTGCGGCAGAAGTACAAGACAAGTACAGATCGCGACCCTGTATTTGAGGAGTTATTAGATGANAATAGCCGCCAAAATTTTATGGAATACGGAGCCAGAGCGCTTTGGAAGGACTTTTTGGTGATATGTTCAGGGTATAATGATGAGAAAAGGATTTCGTCATAAATATTCCAGCACTAAAGCTCCCGACGCGCATTTCGTTCGCTAATATAAATTGCTGCTGGAAGATGAACACCCGGCCCGGCCCGAAAAGAGCATAAGAAAAAGTTCTGTCTGCTCGCCTTCCTCAGCCTTGATTATCCTGAGGCCATACATTTAGCTCCAACTGCATATGATGATATATGCTCCCAGTTACCACTGATCTCTTGTAAAACCATTCAACTGTTTTGCTTGTATCATGGTCGTGTTCTAACGATATTACTATTCCTTTAACATNTTGTTGTAGTTCCAGTTCTTCAGTTTTAACAATGGCACTTTATCCTGACTAAAAAA] [+] EMBL BQ907929 [CGCGGTCCGAGGACACTGCGGCAGTAAGTGTCCTGAAAAGAGGCGTAAGCGATCTCTTGTTCAGGACACTGCGGCAGAAGTACAAGACAAGTACAGATCGCGACCCTGTATTTGAGGAGTTATTAGATGANAATAGCCGCCAAAATTTTATGGAATACGGAGCCAGAGCGCTTTGGAAGGACTTTTTGGTGATATGTTCAGGGTATAATGATGAGAAAAGGATTTCGTCATAAATATTCCAGCACTAAAGCTCCCGACGCGCATTTCGTTCGCTAATATAAATTGCTGCTGGAAGATGAACACCCGGCCCGGCCCGAAAAGAGCATAAGAAAAAGTTCTGTCTGCTCGCCTTCCTCAGCCTTGATTATCCTGAGGCCATACATTTAGCTCCAACTGCATATGATGATATATGCTCCCAGTTACCACTGATCTCTTGTAAAACCATTCAACTGTTTTGCTTGTATCATGGTCGTGTTCTAACGATATTACTATTCCTTTAACATNTTGTTGTAGTTCCAGTTCTTCAGTTTTAACAATGGCACTTTATCCTGACTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4842#0 ACCCACCCGCGCCCCAAATCACGAGGAGGCGAAGCCGCCCATCTCATCGCCGGAGCTCGC 60 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 GAATTCGCCGCCGCGATTCCGACCACCGCCGCGCCGGCGCCCGCGCCCGCTACGGTACTC 120 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 CGCCGCCGTGCTGAGATCGCCGGGGGAGCCATGTCGCGGTCCCTGAGCATGAGGTCGTCG 180 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 ATGAGCATGAGGTCGCGCCGCGACCTGCCTCCTCCCCAGCAGACAATCGAAAAGCTTGAG 240 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 AATATGGTGGCTGAAGGAAATTATTATGAAGCCCAACAAATGTACAAGTCAACCGGTGCA 300 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 AGGTATATTGCTGCTCAGAAGTATTTGGAAGCCTTGGACATCCTTCAGTCAGGAGCTTTA 360 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 GTTCAACTGAAGCATGGGCAGGTTCTATCAAAGCTAAATTTCATAGATCTAAGTAAAAAA 420 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 AAAATATTCGCTACATTTGATGGCAAAGTAACACCCCTCCCAAAAGAAAAGAGAAGAGAG 480 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 AGCCAACCAAAAGCTCATTGCTCCCTTCGTAACGATTTGTTGCAACCAGCCAATGGACCT 540 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 TGACGTGTTCATTTGAAGTTGTTTTTTTAATGTGTGTATTGTCGATGTGGTGGTAGTGAT 600 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 TCACATCTTATTATGGGATGTTTTTATTGGGTGCTATGCTGTAGTTACATACATGTGTTA 660 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 TCCTAGATTGGTGTTTTATATCATTTTAAACCTTCACATTTTTGCCTTATTGGTTAAAAA 720 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 TTCCTGATTTCAGGTAACTTGTGGTGGTGAACTTGCTATAATGTTTGTGGACACCCTTGT 780 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 CAAGGCAGCGCTTCCTTATAATGAAGAAACCTTTGATCGTATCAGAAAGATGTACGACGC 840 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 CTTCCCCAGGATATCTGTTCCACACTTCCTTGGAGATGATTATGATGACGACGGGCAGAA 900 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 ATTATCCGAAGCTATTTCTGCAGCAAAAGTGCGTTCTGAGAGTTGTTCATCATTCCTGAG 960 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 AGCTGCTATCAGGTGGTCTGCTGAGGTTGGGGCATCAAGAAGTGGATCTCCTGAGCTGCA 1020 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 TGTTATGTTGGCGGAATACATATATTCTGAATCTCCAGAAACGGACATGACTAAAGTGTC 1080 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 AAGTCATTTTGTGAGGGGAAATGATCCTAAAAAGTTTGCCTCTATGCTGGCGAACTTTAT 1140 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 GGGAAAGGTAATGGTTTTTAGAAAATAATTGATAATAGACTTGCAGCTGATGATTGTCTA 1200 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 ATGCCAAATTCTATTGAACTGTTACATTCTTCTGTTCTCTGAGCAATGATTAAAATGTCT 1260 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 TATCTGAATATGATCAGTAGGTTCACATTCTTTACAACAATTTTCATTTTACAACGGGTC 1320 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 TCTTGCTTATAGTTTTTATTTGAGTTGGAGGTCATCCTTCTCCGAAAATAGAAACACGGT 1380 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 GCCAGCAAGTGATTGTTCAATCAGTTATCTATATCCATTTTTGGGTTGGATTATTTCAAG 1440 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 ACCAACATAATCTTCGTGTAAAGCAGTATTCATAGATGTTTTTTCTCAATCAAAAAAATA 1500 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 TTTTTATTAATATTTTTCTTACTGCACAGTGCTACCCTGGTGAAGATGATACTGCAATAG 1560 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 CACGTGGTGTCCTAATGTATCTATCACAAGGGAATCTTAGGGATGCAAATTTGCTCATGG 1620 consensus_4842#1 ------------------------------------------------------------ consensus_4842#0 ACGAGCTGAAGGATCAACTAAAATCTGCTGACTTGGAAATCCCCAAAACAGATTTAATTC 1680 consensus_4842#1 -----------------------------------------CGCGGTCCGAGGACACTGC 19 * * * * * * consensus_4842#0 AGTTCATCAAGTATCTCTTACCGACGCTCGAAAGAGATGCTTACCCTCTTTTCAGGACAC 1740 consensus_4842#1 GG--CAGTAAGTGTCCTGAAAAGAGGC--GTAAGCGAT------CTCTTGTTCAGGACAC 69 * ** **** ** * ** ** * *** *** * * ********** consensus_4842#0 TGCGGCAGAAGTACAAGACAAGTACAGATCACGACCCTGTATTTGAGGAGTTATTAGATG 1800 consensus_4842#1 TGCGGCAGAAGTACAAGACAAGTACAGATCGCGACCCTGTATTTGAGGAGTTATTAGATG 129 ****************************** ***************************** consensus_4842#0 AAA-TAGCCGC-AAAATTTTATGGAATACGGAGCCAGAGCGCTTTGGAAGGACTTTTTGG 1858 consensus_4842#1 ANAATAGCCGCCAAAATTTTATGGAATACGGAGCCAGAGCGCTTTGGAAGGACTTTTTGG 189 * * ******* ************************************************ consensus_4842#0 TGATATGTTCAGGGTATAATGATGAGAAAAGGATTTCGTCATAAATATTCCAGCAC-AAA 1917 consensus_4842#1 TGATATGTTCAGGGTATAATGATGAGAAAAGGATTTCGTCATAAATATTCCAGCACTAAA 249 ******************************************************** *** consensus_4842#0 GCTCCCGACGCGCATTTCGTTCGCTAATACAAATTGCTGCTGGAAGATGAACACCCGGCC 1977 consensus_4842#1 GCTCCCGACGCGCATTTCGTTCGCTAATATAAATTGCTGCTGGAAGATGAACACCCGGCC 309 ***************************** ****************************** consensus_4842#0 CGGCCCGAAAAGAGCATAAGAAAAAGTTCTGT-TGCT-GCCTTCCTCAGCCTTGATTATC 2035 consensus_4842#1 CGGCCCGAAAAGAGCATAAGAAAAAGTTCTGTCTGCTCGCCTTCCTCAGCCTTGATTATC 369 ******************************** **** ********************** consensus_4842#0 CTGAGGCCATACATTTAGCTCCAAACTGCATATGATGATATATGCTCC-AGTTACCACTG 2094 consensus_4842#1 CTGAGGCCATACATTTAGCTCCAA-CTGCATATGATGATATATGCTCCCAGTTACCACTG 428 ************************ *********************** *********** consensus_4842#0 ATCTCTTGTAAAACCATTCAACTGTTTTGCTCGTATCATGGTCGTGTTCTAATGATATTA 2154 consensus_4842#1 ATCTCTTGTAAAACCATTCAACTGTTTTGCTTGTATCATGGTCGTGTTCTAACGATATTA 488 ******************************* ******************** ******* consensus_4842#0 CTATTC-TTTAACATTTT-TTGTAGTTCCAGTTTTGCAGTTTTAA-AACGG--------- 2202 consensus_4842#1 CTATTCCTTTAACATNTTGTTGTAGTTCCAGTTCTTCAGTTTTAACAATGGCACTTTATC 548 ****** ******** ** ************** * ********* ** ** consensus_4842#0 ------------ consensus_4842#1 CTGACTAAAAAA 560 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||