These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1311 fasta sequence [GGCACGCCGTTCTACCGCCACAAGCCTGTCCGCCGGGGCGCCGCCGCCGGCCCCGCGAGGCTCGTCGGGAGGGTGTTCAGGGCGGCGTTCGCGAACCGGAGACGGCAGCTGCACGGTGATCAGCTGCACGAGCACGACGCGGCGTGGTACGCCGCCGCCGGGACGAAGCGGCGGCTGCACCACACGCGGGGCTACAGGTTCTTGGACAAGGCGGCGCTGCCGGCGGCGGCGGCGGAGGCGGAGGCGTGCACGGTGACGGAGGTGGAGGAGGTGAAGCTGATCACGGGGATGATCGTGGTGTGGCTGACGACGCTGGTGCCGTGCACCATCTGGGCGCAGGTGAACACGCTGTTCGTGAAGCAGGGCACCACCCTGGACCGCACCGTCGGCGGCGTCCGCATCCCGGCGGCCTCCCTCGGCAGCTTCATCACCATCTCCATGCTCCTCTCCATCCCGGTCTACGACCGCGTGCTCGTCCCCCTCGCCCGCCGCCGCACCGGCGAACCCCGCGGCATCACGCTCCTGCAGCGCCTCGGCGTCGGGTCGGCGCTCCAGGTGGCGGCGGTGGCGTGCGCCTGCCTCGTGGAGCTCCGCCGCATGCGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTCTGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATCCTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTCTTCACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTCGTCACCGCCGTCGACCGCGCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCACCTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTGTGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTCGCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAGAGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTTGCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAATACACGTATAAAACTATATATACGTATATAATGGACCATACATGGGTTGAAATTCGGGTTAAGCAATATGGAAATGCCACGTACCATAATCCCGTCCGGACGGGATCCCTTT] [+] EMBL AK108393 [GGCACGCCGTTCTACCGCCACAAGCCTGTCCGCCGGGGCGCCGCCGCCGGCCCCGCGAGGCTCGTCGGGAGGGTGTTCAGGGCGGCGTTCGCGAACCGGAGACGGCAGCTGCACGGTGATCAGCTGCACGAGCACGACGCGGCGTGGTACGCCGCCGCCGGGACGAAGCGGCGGCTGCACCACACGCGGGGCTACAGGTTCTTGGACAAGGCGGCGCTGCCGGCGGCGGCGGCGGAGGCGGAGGCGTGCACGGTGACGGAGGTGGAGGAGGTGAAGCTGATCACGGGGATGATCGTGGTGTGGCTGACGACGCTGGTGCCGTGCACCATCTGGGCGCAGGTGAACACGCTGTTCGTGAAGCAGGGCACCACCCTGGACCGCACCGTCGGCGGCGTCCGCATCCCGGCGGCCTCCCTCGGCAGCTTCATCACCATCTCCATGCTCCTCTCCATCCCGGTCTACGACCGCGTGCTCGTCCCCCTCGCCCGCCGCCGCACCGGCGAACCCCGCGGCATCACGCTCCTGCAGCGCCTCGGCGTCGGGTCGGCGCTCCAGGTGGCGGCGGTGGCGTGCGCCTGCCTCGTGGAGCTCCGCCGCATGCGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTCTGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATCCTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTCTTCACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTCGTCACCGCCGTCGACCGCGCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCACCTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTGTGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTCGCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAGAGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTTGCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAATACACGTATAAAACTATATATACGTATATAATGGACCATACATGGGTTGAAATTCGGGTTAAGCAATATGGAAATGCCACGTACCATAATCCCGTCCGGACGGGATCCCTTT] [+] EMBL BI812508 [ cacGCCTCGGC TCGGAAACTTCTTCAACAGCCTGCTCGTCACCGCCGTCGACCGCGCCACCAGGGGC GCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCACCTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGCCGGTGTTCGTGTGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTCGCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAGAGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTTGCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAATACACGTAAAACTATATATATACGTATATAATGGACCATACATGGGTTGAAATTCGGGTTAAGCCATATGGAAATGCTACaaaaaaaaa ] consensusID : consensus_4844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [CGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTCTGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATCCTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTTTTCACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTTGTCACCGCCGTCGACCGCGCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCACCTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTGTGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTCGCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAGAGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTTGCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAATACACGTATAAAACTATATATAAGGGATATAATGGACCATACATGGGTTGAAAAAAAATAAAAA] [-] EMBL CB671726 [CGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTCTGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATCCTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTTTTCACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTTGTCACCGCCGTCGACCGCGCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCACCTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTGTGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTCGCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAGAGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTTGCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAATACACGTATAAAACTATATATAAGGGATATAATGGACCATACATGGGTTGAAAAAAAATAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4844#0 GGCACGCCGTTCTACCGCCACAAGCCTGTCCGCCGGGGCGCCGCCGCCGGCCCCGCGAGG 60 consensus_4844#1 ------------------------------------------------------------ consensus_4844#0 CTCGTCGGGAGGGTGTTCAGGGCGGCGTTCGCGAACCGGAGACGGCAGCTGCACGGTGAT 120 consensus_4844#1 ------------------------------------------------------------ consensus_4844#0 CAGCTGCACGAGCACGACGCGGCGTGGTACGCCGCCGCCGGGACGAAGCGGCGGCTGCAC 180 consensus_4844#1 ------------------------------------------------------------ consensus_4844#0 CACACGCGGGGCTACAGGTTCTTGGACAAGGCGGCGCTGCCGGCGGCGGCGGCGGAGGCG 240 consensus_4844#1 ------------------------------------------------------------ consensus_4844#0 GAGGCGTGCACGGTGACGGAGGTGGAGGAGGTGAAGCTGATCACGGGGATGATCGTGGTG 300 consensus_4844#1 ------------------------------------------------------------ consensus_4844#0 TGGCTGACGACGCTGGTGCCGTGCACCATCTGGGCGCAGGTGAACACGCTGTTCGTGAAG 360 consensus_4844#1 ------------------------------------------------------------ consensus_4844#0 CAGGGCACCACCCTGGACCGCACCGTCGGCGGCGTCCGCATCCCGGCGGCCTCCCTCGGC 420 consensus_4844#1 ------------------------------------------------------------ consensus_4844#0 AGCTTCATCACCATCTCCATGCTCCTCTCCATCCCGGTCTACGACCGCGTGCTCGTCCCC 480 consensus_4844#1 ------------------------------------------------------------ consensus_4844#0 CTCGCCCGCCGCCGCACCGGCGAACCCCGCGGCATCACGCTCCTGCAGCGCCTCGGCGTC 540 consensus_4844#1 ------------------------------------------------------------ consensus_4844#0 GGGTCGGCGCTCCAGGTGGCGGCGGTGGCGTGCGCCTGCCTCGTGGAGCTCCGCCGCATG 600 consensus_4844#1 ------------------------------------------------------------ consensus_4844#0 CGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTC 660 consensus_4844#1 CGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTC 60 ************************************************************ consensus_4844#0 TGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATC 720 consensus_4844#1 TGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATC 120 ************************************************************ consensus_4844#0 CTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTCTTC 780 consensus_4844#1 CTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTTTTC 180 ******************************************************** *** consensus_4844#0 ACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTCGTCACCGCCGTCGACCGC 840 consensus_4844#1 ACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTTGTCACCGCCGTCGACCGC 240 ***************************************** ****************** consensus_4844#0 GCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCAC 900 consensus_4844#1 GCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCAC 300 ************************************************************ consensus_4844#0 CTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTG 960 consensus_4844#1 CTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTG 360 ************************************************************ consensus_4844#0 TGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTC 1020 consensus_4844#1 TGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTC 420 ************************************************************ consensus_4844#0 GCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAG 1080 consensus_4844#1 GCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAG 480 ************************************************************ consensus_4844#0 AGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTT 1140 consensus_4844#1 AGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTT 540 ************************************************************ consensus_4844#0 GCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAAT 1200 consensus_4844#1 GCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAAT 600 ************************************************************ consensus_4844#0 ACACGTATAAAACTATATATACGT-ATATAATGGACCATACATGGGTTGAAATTCGGGTT 1259 consensus_4844#1 ACACGTATAAAACTATATATAAGGGATATAATGGACCATACATGGGTTGAAAA--AAAAT 658 ********************* * *************************** * consensus_4844#0 AAGCAATATGGAAATGCCACGTACCATAATCCCGTCCGGACGGGATCCCTTT 1311 consensus_4844#1 AAAAA----------------------------------------------- 663 ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||