These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 969 fasta sequence [CTCCCACATCCTCGGCGCGAGACGTGAACGAAACGTCCCAAGCCTACCGCCGCCGCGAGGATCTCTCGAATCGCGCAACTCACAGCAGAGGGAGAGGAAGAAGCCGAGCGCCATGGACGCCCTCGTCTGCACCAACGCCTTCGCCACCGCCATCGCCGCCGGCAGGTTTCCCCTCCCGCGAGGCCGCTCGCCCCCGTACGCCGCGGCAGCCGTCCCCGCCCTCCGCTCCCGCCGCTGCCTCCCGACTCGAGGGCTGCTACGCCTGCGCTGCGCCAGGGGGGTGGATTGGACTGATCCGTCGTTCGTGGCAGTCGCGGAGAAGCCCGACGCGGGGGCGGAGGCATGGAAGGCGCTCGCATCCGCGGGCGGCGGTGGCATCGAGGAGGAGGAGGATGGCCCGTTTGAGGCGATCAACGGTGATGGAGGATACTCGGTGGAGGAGTCTGTGGTCTTGCCGCCATTCGAGCAGAGCTTGGTGGCGGCGGTGGCGGACAGTGTCGAGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAGTTGGATTTCAAGGAGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATTGCCGGATGGATTTTGTCTGCTGTTGTTTCAGCAATTGATTCCATTCCCTTGTTCCCAAAGATACTGCAAATTGTAGGCCTTGGCTACACAATTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAAAACAGAGATGAACTGTTTGTTAAAGTTGATGATCTCAAAAGGAAAATTACTGGGTATGGTGATGAATAATGTGTTAGAATGAGGCTGGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTTTTTTTATCATGCTACAAAATTGCAATGCCTGTGCAATTATATGTATTGTTATCGGCTATTTGTAATGAATGAATATTCTTTGCCAACAAATCGAGCAGTCATCTGCTGTTTTGAATAGTGAAAAAAACAAAAAA] [+] EMBL AK062617 [CTCCCACATCCTCGGCGCGAGACGTGAACGAAACGTCCCAAGCCTACCGCCGCCGCGAGGATCTCTCGAATCGCGCAACTCACAGCAGAGGGAGAGGAAGAAGCCGAGCGCCATGGACGCCCTCGTCTGCACCAACGCCTTCGCCACCGCCATCGCCGCCGGCAGGTTTCCCCTCCCGCGAGGCCGCTCGCCCCCGTACGCCGCGGCAGCCGTCCCCGCCCTCCGCTCCCGCCGCTGCCTCCCGACTCGAGGGCTGCTACGCCTGCGCTGCGCCAGGGGGGTGGATTGGACTGATCCGTCGTTCGTGGCAGTCGCGGAGAAGCCCGACGCGGGGGCGGAGGCATGGAAGGCGCTCGCATCCGCGGGCGGCGGTGGCATCGAGGAGGAGGAGGATGGCCCGTTTGAGGCGATCAACGGTGATGGAGGATACTCGGTGGAGGAGTCTGTGGTCTTGCCGCCATTCGAGCAGAGCTTGGTGGCGGCGGTGGCGGACAGTGTCGAGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAGTTGGATTTCAAGGAGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATTGCCGGATGGATTTTGTCTGCTGTTGTTTCAGCAATTGATTCCATTCCCTTGTTCCCAAAGATACTGCAAATTGTAGGCCTTGGCTACACAATTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAAAACAGAGATGAACTGTTTGTTAAAGTTGATGATCTCAAAAGGAAAATTACTGGGTATGGTGATGAATAATGTGTTAGAATGAGGCTGGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTTTTTTTATCATGCTACAAAATTGCAATGCCTGTGCAATTATATGTATTGTTATCGGCTATTTGTAATGAATGAATATTCTTTGCCAACAAATCGAGCAGTCATCTGCTGTT ] [+] EMBL CB681075 [ TGTATGGCAGTGGTGCTTTCATTGCCGGATGGATTTTGTCTGCTGTTGTTTCAGCAATTGATTCCATTCCCTTGTTCCCAAAGATACTGCAAATTGTAGGCCTTGGCTACACAATTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAAAACAGAGATGAACTGCTTGTTAAAGTTGATGATCTCAAAAGGAAAATTACTGGGTATGGTGATGAATAATGTGTTAAAATGAAGCTGGACTTTACTTTCCTCTTGTGTTTAGTTAGATTTTTTTTATCATGCTACAAAATTGCAATGCCTGTGCAATTATATGTATTGTTATCCGCTATTTGTAATGAATGAATATTCTTTGCCAACAAATCGAGCAGTCATCTGCTGTTTTGAATAGTGAAAAAAACAAAAAA] consensusID : consensus_4849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [GTNGCATTCCCGAAAACCGACCGGGGCCGGAGCATGGAAGCGCTCGCATCCCGGGCGCGGTGNCATCGAGGAGAGGAGGAGGAGGATGGCCCTTTGAGCGATCAAACGTTGAGGGAGATACTCGGTGGAGGAGTCTGTTGTCTTGCCCCATTCGACAGAGCTTGTGCGCGGTGCGGACAGTGTCGGGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAGTTGGATTTCAAGGAGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATTCCGGATGGATTTTGTCTGCTGTTGTTTCAGCATTGATTCCATTCCCTTGTTCCCAAGATACTGCAATTGTAGGCCTTGGCTACACATTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAAAACAGAGATGAACTGTTTGTTAAAGTTGATGATCTCAAAGGAAAATTACTGGGTATGGTGATGAATAGTGTGTTAGAATGAAGCTGGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTTTTTTTATCATGCTACAAATTGCATGCCTGTGCATTATATGTATTGTTATCGGCTATTTGTAATGAATGAATATTCTTTGCCACAATCGACAGTCATCTGCTGTTTTGAATAGTGCAATGGTCGGTCCCTCCTTTTTAAAAAAAAAA] [+] EMBL BI806076 [GTNGCATTCCCGAAAACCGACCGGGGCCGGAGCATGGAAGCGCTCGCATCCCGGGCGCGGTGNCATCGAGGAGAGGAGGAGGAGGATGGCCCTTTGAGCGATCAAACGTTGAGGGAGATACTCGGTGGAGGAGTCTGTTGTCTTGCCCCATTCGACAGAGCTTGTGCGCGGTGCGGACAGTGTCGGGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAGTTGGATTTCAAGGAGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATTCCGGATGGATTTTGTCTGCTGTTGTTTCAGCATTGATTCCATTCCCTTGTTCCCAAGATACTGCAATTGTAGGCCTTGGCTACACATTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAAAACAGAGATGAACTGTTTGTTAAAGTTGATGATCTCAAAGGAAAATTACTGGGTATGGTGATGAATAGTGTGTTAGAATGAAGCTGGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTTTTTTTATCATGCTACAAATTGCATGCCTGTGCATTATATGTATTGTTATCGGCTATTTGTAATGAATGAATATTCTTTGCCACAATCGACAGTCATCTGCTGTTTTGAATAGTGCAATGGTCGGTCCCTCCTTTTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4849#0 CTCCCACATCCTCGGCGCGAGACGTGAACGAAACGTCCCAAGCCTACCGCCGCCGCGAGG 60 consensus_4849#1 ------------------------------------------------------------ consensus_4849#0 ATCTCTCGAATCGCGCAACTCACAGCAGAGGGAGAGGAAGAAGCCGAGCGCCATGGACGC 120 consensus_4849#1 ------------------------------------------------------------ consensus_4849#0 CCTCGTCTGCACCAACGCCTTCGCCACCGCCATCGCCGCCGGCAGGTTTCCCCTCCCGCG 180 consensus_4849#1 ------------------------------------------------------------ consensus_4849#0 AGGCCGCTCGCCCCCGTACGCCGCGGCAGCCGTCCCCGCCCTCCGCTCCCGCCGCTGCCT 240 consensus_4849#1 ------------------------------------------------------------ consensus_4849#0 CCCGACTCGAGGGCTGCTACGCCTGCGCTGCGCCAGGGGGGTGGATTGGACTGATCCGTC 300 consensus_4849#1 ------------------------------------------------------------ consensus_4849#0 GTTCGTGGCAGTCGCGGAGAAGCCCGACGCGGGGGCGGAGGCATGGAAGGCGCTCGCATC 360 consensus_4849#1 ----GTNGCATTCCCGAAAA---CCGAC-CGGGGCCGGAG-CATGGAAG-CGCTCGCATC 50 ** *** ** ** * * ***** ***** ***** ******** ********** consensus_4849#0 CGCGGGCGGCGGTGGCATCGAGGAG-----GAGGAGGATGGCCCGTTTGAGGCGATCAAC 415 consensus_4849#1 C-CGGGCG-CGGTGNCATCGAGGAGAGGAGGAGGAGGATGGCCC-TTTGAG-CGATCAAA 106 * ****** ***** ********** ************** ****** ******* consensus_4849#0 GGTGATGGAGGATACTCGGTGGAGGAGTCTGTGGTCTTGCCGCCATTCGAGCAGAGCTTG 475 consensus_4849#1 CGTTGAGGGAGATACTCGGTGGAGGAGTCTGTTGTCTTGCC-CCATTCGA-CAGAGCTTG 164 ** ** ********************** ******** ******** ********* consensus_4849#0 GTGGCGGCGGTGGCGGACAGTGTCGAGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAG 535 consensus_4849#1 TGCGCGGTG----CGGACAGTGTCGGGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAG 220 **** * ************ ********************************** consensus_4849#0 TTGGATTTCAAGGAGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATTGCCGGA 595 consensus_4849#1 TTGGATTTCAAGGAGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATT-CCGGA 279 ****************************************************** ***** consensus_4849#0 TGGATTTTGTCTGCTGTTGTTTCAGCAATTGATTCCATTCCCTTGTTCCCAAAGATACTG 655 consensus_4849#1 TGGATTTTGTCTGCTGTTGTTTCAGCA-TTGATTCCATTCCCTTGTTCCCAA-GATACTG 337 *************************** ************************ ******* consensus_4849#0 CAAATTGTAGGCCTTGGCTACACAATTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAA 715 consensus_4849#1 CAA-TTGTAGGCCTTGGCTACACA-TTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAA 395 *** ******************** *********************************** consensus_4849#0 AACAGAGATGAACTGTTTGTTAAAGTTGATGATCTCAAAAGGAAAATTACTGGGTATGGT 775 consensus_4849#1 AACAGAGATGAACTGTTTGTTAAAGTTGATGATCTCAAA-GGAAAATTACTGGGTATGGT 454 *************************************** ******************** consensus_4849#0 GATGAATAATGTGTTAGAATGAGGCTGGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTT 835 consensus_4849#1 GATGAATAGTGTGTTAGAATGAAGCTGGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTT 514 ******** ************* ************************************* consensus_4849#0 TTTTTATCATGCTACAAAATTGCAATGCCTGTGCAATTATATGTATTGTTATCGGCTATT 895 consensus_4849#1 TTTTTATCATGCTACAAA-TTGCA-TGCCTGTGCA-TTATATGTATTGTTATCGGCTATT 571 ****************** ***** ********** ************************ consensus_4849#0 TGTAATGAATGAATATTCTTTGCCAACAAATCGAGCAGTCATCTGCTGTTTTGAATAGTG 955 consensus_4849#1 TGTAATGAATGAATATTCTTTGCCAC--AATCGA-CAGTCATCTGCTGTTTTGAATAGTG 628 ************************* ****** ************************* consensus_4849#0 AAAAAAACAAAAAA------------------ 969 consensus_4849#1 CAATGGTCGGTCCCTCCTTTTTAAAAAAAAAA 660 ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||