These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4852#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 221 fasta sequence [TTTTTTGAATTTTTTTAGTTTTTTTGTTTGGTTTTTTCTAAGCTTTTGAAAAAAACTTAAAAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCACATTTGTTGAAAGGTGGAGAGGGAAGCAAGAATGGATCCTCCAATCCAAACTGAATATTTTCTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATGG] [+] EMBL AU165188 [TTTTTTGAATTTTTTTAGTTTTTTTGTTTGGTTTTTTCTAAGCTTTTGAAAAAAACTTAAAAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCACATTTGTTGAAAGGTGGAGAGGGAAGCAAGAATGGATCCTCCAATCCAAACTGAATATTTTCTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATG ] [-] EMBL AU165187 [ TTTTTGAATTTTTTTAGTTTTTTTGTTTGGGCCGTTCTAAGCCTTTGAAAAAAACTCTAAAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCACATTCGTTGAAAGGTGGAGAGGGAAGCAAGAATGGATCCTCCAATCCAAACTGAATATTTTCTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATGG] consensusID : consensus_4852#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence [TTTTTAAGTTTTATAACACACTTTATTTATACTTTTCTATAAAATTTTTTAAAAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCACATTTGTTGAAAAGTGGAAAGAGAAGCAAGAATTGATCCTCCAATCCAAACAGAGTATTTTCTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATGG] [-] EMBL AU165195 [TTTTTAAGTTTTATAACACACTTTATTTATACTTTTCTATAAAATTTTTTAAAAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCACATTTGTTGAAAAGTGGAAAGAGAAGCAAGAATTGATCCTCCAATCCAAACAGAGTATTTTCTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4852#0 TTTTTTGAATTTTTTTAGTTTTTTTGTTTGGTTTTTTCTAAGCTTTTGAAAAAAACTTAA 60 consensus_4852#1 -TTTTTAAGTTTTATAACACACTTTATTTATACTTTTCTAT-------AAAATTTTTTAA 52 ***** * **** * * *** *** ******* **** **** consensus_4852#0 AAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCAC 120 consensus_4852#1 AAGCATTTTCTGTGAACGATTGCAGGTCCAGATTCATCGTATTCTTCTTTTGAGATCCAC 112 ************************************************************ consensus_4852#0 ATTTGTTGAAAGGTGGAGAGGGAAGCAAGAATGGATCCTCCAATCCAAACTGAATATTTT 180 consensus_4852#1 ATTTGTTGAAAAGTGGAAAGAGAAGCAAGAATTGATCCTCCAATCCAAACAGAGTATTTT 172 *********** ***** ** *********** ***************** ** ****** consensus_4852#0 CTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATGG 221 consensus_4852#1 CTTTCAGGTGGAGCAATGATTTTGATTCTCATTGTTGATGG 213 ***************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||