cluster # 4853

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Oryza sativa
cluster # 4853 cluster # 4853 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4853#0 length = 704 sequences # 1

consensus_4853#1 length = 193 sequences # 1
consensus_4853#2 length = 188 sequences # 1

consensusID : consensus_4853#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence

                              [ACTAAATAATTACTCAAACCATCATCAGTAACAACCAGATTACAGTATTCATTCCCAAACATACAAATCATATCCATGGCCAAACAGGCGACAGCTGCGGTGCTCGCCGTCGCGTTGGTGCTCGCGGCGTCGGCGGGGCTCGCGCACGGCATCTGCAACCTGTCGGACGCGGGGCTCCAGGCGTGCAAGCCGGCGGCCGCCGTGCGCAACCCGGCGGACACGCCGTCGTCCGAGTGCTGCGACGCGCTGGCCGCCGCCGACCTGCCGTGCCTGTGCCGGTACAAGGGCTCCGCCGGCGCCCGCGTGTGGGTGAGGTTCTACGGGATCGACCTCAACCGCGCCATGACGCTGCCGGGCAAGTGCGGCCTCACCTTGCCGGCGCACTGCTAGTGCTAGCTAGCTGATGGCAAGCACAAACTACAGTGCGGCGACCTCGATCGCCATGTTGCTGCAATTCAATTATGCAGTCGTGACCACTAGCGCTACCAATATATAGCATATATATAGTAGTAATATTAATATATATGTCATACTATGCGATCGATGAGCCCGGCAAGGGGAGATGAATAAATTTGGCAACATATATATGTATTTATGCTCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTC]

[+] EMBL AK062503             [ACTAAATAATTACTCAAACCATCATCAGTAACAACCAGATTACAGTATTCATTCCCAAACATACAAATCATATCCATGGCCAAACAGGCGACAGCTGCGGTGCTCGCCGTCGCGTTGGTGCTCGCGGCGTCGGCGGGGCTCGCGCACGGCATCTGCAACCTGTCGGACGCGGGGCTCCAGGCGTGCAAGCCGGCGGCCGCCGTGCGCAACCCGGCGGACACGCCGTCGTCCGAGTGCTGCGACGCGCTGGCCGCCGCCGACCTGCCGTGCCTGTGCCGGTACAAGGGCTCCGCCGGCGCCCGCGTGTGGGTGAGGTTCTACGGGATCGACCTCAACCGCGCCATGACGCTGCCGGGCAAGTGCGGCCTCACCTTGCCGGCGCACTGCTAGTGCTAGCTAGCTGATGGCAAGCACAAACTACAGTGCGGCGACCTCGATCGCCATGTTGCTGCAATTCAATTATGCAGTCGTGACCACTAGCGCTACCAATATATAGCATATATATAGTAGTAATATTAATATATATGTCATACTATGCGATCGATGAGCCCGGCAAGGGGAGATGAATAAATTTGGCAACATATATATGTATTTATGCTCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTC]




>consensus_4853#0
ACTAAATAATTACTCAAACCATCATCAGTAACAACCAGATTACAGTATTCATTCCCAAAC
ATACAAATCATATCCATGGCCAAACAGGCGACAGCTGCGGTGCTCGCCGTCGCGTTGGTG
CTCGCGGCGTCGGCGGGGCTCGCGCACGGCATCTGCAACCTGTCGGACGCGGGGCTCCAG
GCGTGCAAGCCGGCGGCCGCCGTGCGCAACCCGGCGGACACGCCGTCGTCCGAGTGCTGC
GACGCGCTGGCCGCCGCCGACCTGCCGTGCCTGTGCCGGTACAAGGGCTCCGCCGGCGCC
CGCGTGTGGGTGAGGTTCTACGGGATCGACCTCAACCGCGCCATGACGCTGCCGGGCAAG
TGCGGCCTCACCTTGCCGGCGCACTGCTAGTGCTAGCTAGCTGATGGCAAGCACAAACTA
CAGTGCGGCGACCTCGATCGCCATGTTGCTGCAATTCAATTATGCAGTCGTGACCACTAG
CGCTACCAATATATAGCATATATATAGTAGTAATATTAATATATATGTCATACTATGCGA
TCGATGAGCCCGGCAAGGGGAGATGAATAAATTTGGCAACATATATATGTATTTATGCTC
TTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAA
TATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTC

consensusID : consensus_4853#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 193
fasta sequence

                              [NTCCGCNANGCTNGGTNNGGTGNGCCNGAGGACGCGACAGGGGAGATGAANAATTNGGCACATATATATATGNATTNATGCTCTTCTTTAGATATAAAAGATATGCGTGAGATGAANAGGTTGNGTGTTTAACCNATAATATATTNGAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATCAAAAAAA]

[+] EMBL CA764802             [NTCCGCNANGCTNGGTNNGGTGNGCCNGAGGACGCGACAGGGGAGATGAANAATTNGGCACATATATATATGNATTNATGCTCTTCTTTAGATATAAAAGATATGCGTGAGATGAANAGGTTGNGTGTTTAACCNATAATATATTNGAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATCAAAAAAA]




>consensus_4853#1
NTCCGCNANGCTNGGTNNGGTGNGCCNGAGGACGCGACAGGGGAGATGAANAATTNGGCA
CATATATATATGNATTNATGCTCTTCTTTAGATATAAAAGATATGCGTGAGATGAANAGG
TTGNGTGTTTAACCNATAATATATTNGAATGATACTGATTTGAGTAAAAGAGGAAGTCGT
TCTATCAAAAAAA

consensusID : consensus_4853#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence

                              [AGAGGACGAGACAAGGGGAGATGAATAAATTTGGCAACATATATATATGTATTTATGCTCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATACTTTTCAAAAAAAAAAAAAA]

[-] EMBL CA761217             [AGAGGACGAGACAAGGGGAGATGAATAAATTTGGCAACATATATATATGTATTTATGCTCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATACTTTTCAAAAAAAAAAAAAA]




>consensus_4853#2
AGAGGACGAGACAAGGGGAGATGAATAAATTTGGCAACATATATATATGTATTTATGCTC
TTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAA
TATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATACTTTTCAAAAAA
AAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      ACTAAATAATTACTCAAACCATCATCAGTAACAACCAGATTACAGTATTCATTCCCAAAC 60
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      ATACAAATCATATCCATGGCCAAACAGGCGACAGCTGCGGTGCTCGCCGTCGCGTTGGTG 120
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      CTCGCGGCGTCGGCGGGGCTCGCGCACGGCATCTGCAACCTGTCGGACGCGGGGCTCCAG 180
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      GCGTGCAAGCCGGCGGCCGCCGTGCGCAACCCGGCGGACACGCCGTCGTCCGAGTGCTGC 240
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      GACGCGCTGGCCGCCGCCGACCTGCCGTGCCTGTGCCGGTACAAGGGCTCCGCCGGCGCC 300
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      CGCGTGTGGGTGAGGTTCTACGGGATCGACCTCAACCGCGCCATGACGCTGCCGGGCAAG 360
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      TGCGGCCTCACCTTGCCGGCGCACTGCTAGTGCTAGCTAGCTGATGGCAAGCACAAACTA 420
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      CAGTGCGGCGACCTCGATCGCCATGTTGCTGCAATTCAATTATGCAGTCGTGACCACTAG 480
                                                                                  

consensus_4853#1      -----------------------------------NTCCGCNANGCTNGGTNNGGTGNGC 25
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      CGCTACCAATATATAGCATATATATAGTAGTAATATTAATATATATGTCATACTATGCGA 540
                                                                                  

consensus_4853#1      CNGAGGA-CGCGACA-GGGGAGATGAANAA-TTNGGCA-CATATATATATGNATTNATGC 81
consensus_4853#2      -AGAGGA-CGAGACAAGGGGAGATGAATAAATTTGGCAACATATATATATGTATTTATGC 58
consensus_4853#0      TCGATGAGCCCGGCAAGGGGAGATGAATAAATTTGGCA--ACATATATATGTATTTATGC 598
                        ** ** *  * ** *********** ** ** ****  * ********* *** ****

consensus_4853#1      TCTTCTTTAGATAT----AAAAGATATGCGTGAGATGAANAGGTTGNGTGTTTAACCNAT 137
consensus_4853#2      TCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAAT 118
consensus_4853#0      TCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAAT 658
                      ********   ***    ************** ****** ****** ********** **

consensus_4853#1      AATATATTNG-AATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTAT------CAAAA 190
consensus_4853#2      AATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATACTTTTCAAAA 178
consensus_4853#0      AATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTC-------------- 704
                      ******** * ***********************************              

consensus_4853#1      AAA------- 193
consensus_4853#2      AAAAAAAAAA 188
consensus_4853#0      ----------