These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4853#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [ACTAAATAATTACTCAAACCATCATCAGTAACAACCAGATTACAGTATTCATTCCCAAACATACAAATCATATCCATGGCCAAACAGGCGACAGCTGCGGTGCTCGCCGTCGCGTTGGTGCTCGCGGCGTCGGCGGGGCTCGCGCACGGCATCTGCAACCTGTCGGACGCGGGGCTCCAGGCGTGCAAGCCGGCGGCCGCCGTGCGCAACCCGGCGGACACGCCGTCGTCCGAGTGCTGCGACGCGCTGGCCGCCGCCGACCTGCCGTGCCTGTGCCGGTACAAGGGCTCCGCCGGCGCCCGCGTGTGGGTGAGGTTCTACGGGATCGACCTCAACCGCGCCATGACGCTGCCGGGCAAGTGCGGCCTCACCTTGCCGGCGCACTGCTAGTGCTAGCTAGCTGATGGCAAGCACAAACTACAGTGCGGCGACCTCGATCGCCATGTTGCTGCAATTCAATTATGCAGTCGTGACCACTAGCGCTACCAATATATAGCATATATATAGTAGTAATATTAATATATATGTCATACTATGCGATCGATGAGCCCGGCAAGGGGAGATGAATAAATTTGGCAACATATATATGTATTTATGCTCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTC] [+] EMBL AK062503 [ACTAAATAATTACTCAAACCATCATCAGTAACAACCAGATTACAGTATTCATTCCCAAACATACAAATCATATCCATGGCCAAACAGGCGACAGCTGCGGTGCTCGCCGTCGCGTTGGTGCTCGCGGCGTCGGCGGGGCTCGCGCACGGCATCTGCAACCTGTCGGACGCGGGGCTCCAGGCGTGCAAGCCGGCGGCCGCCGTGCGCAACCCGGCGGACACGCCGTCGTCCGAGTGCTGCGACGCGCTGGCCGCCGCCGACCTGCCGTGCCTGTGCCGGTACAAGGGCTCCGCCGGCGCCCGCGTGTGGGTGAGGTTCTACGGGATCGACCTCAACCGCGCCATGACGCTGCCGGGCAAGTGCGGCCTCACCTTGCCGGCGCACTGCTAGTGCTAGCTAGCTGATGGCAAGCACAAACTACAGTGCGGCGACCTCGATCGCCATGTTGCTGCAATTCAATTATGCAGTCGTGACCACTAGCGCTACCAATATATAGCATATATATAGTAGTAATATTAATATATATGTCATACTATGCGATCGATGAGCCCGGCAAGGGGAGATGAATAAATTTGGCAACATATATATGTATTTATGCTCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTC] consensusID : consensus_4853#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 193 fasta sequence [NTCCGCNANGCTNGGTNNGGTGNGCCNGAGGACGCGACAGGGGAGATGAANAATTNGGCACATATATATATGNATTNATGCTCTTCTTTAGATATAAAAGATATGCGTGAGATGAANAGGTTGNGTGTTTAACCNATAATATATTNGAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATCAAAAAAA] [+] EMBL CA764802 [NTCCGCNANGCTNGGTNNGGTGNGCCNGAGGACGCGACAGGGGAGATGAANAATTNGGCACATATATATATGNATTNATGCTCTTCTTTAGATATAAAAGATATGCGTGAGATGAANAGGTTGNGTGTTTAACCNATAATATATTNGAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATCAAAAAAA] consensusID : consensus_4853#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [AGAGGACGAGACAAGGGGAGATGAATAAATTTGGCAACATATATATATGTATTTATGCTCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATACTTTTCAAAAAAAAAAAAAA] [-] EMBL CA761217 [AGAGGACGAGACAAGGGGAGATGAATAAATTTGGCAACATATATATATGTATTTATGCTCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATACTTTTCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4853#1 ------------------------------------------------------------ consensus_4853#2 ------------------------------------------------------------ consensus_4853#0 ACTAAATAATTACTCAAACCATCATCAGTAACAACCAGATTACAGTATTCATTCCCAAAC 60 consensus_4853#1 ------------------------------------------------------------ consensus_4853#2 ------------------------------------------------------------ consensus_4853#0 ATACAAATCATATCCATGGCCAAACAGGCGACAGCTGCGGTGCTCGCCGTCGCGTTGGTG 120 consensus_4853#1 ------------------------------------------------------------ consensus_4853#2 ------------------------------------------------------------ consensus_4853#0 CTCGCGGCGTCGGCGGGGCTCGCGCACGGCATCTGCAACCTGTCGGACGCGGGGCTCCAG 180 consensus_4853#1 ------------------------------------------------------------ consensus_4853#2 ------------------------------------------------------------ consensus_4853#0 GCGTGCAAGCCGGCGGCCGCCGTGCGCAACCCGGCGGACACGCCGTCGTCCGAGTGCTGC 240 consensus_4853#1 ------------------------------------------------------------ consensus_4853#2 ------------------------------------------------------------ consensus_4853#0 GACGCGCTGGCCGCCGCCGACCTGCCGTGCCTGTGCCGGTACAAGGGCTCCGCCGGCGCC 300 consensus_4853#1 ------------------------------------------------------------ consensus_4853#2 ------------------------------------------------------------ consensus_4853#0 CGCGTGTGGGTGAGGTTCTACGGGATCGACCTCAACCGCGCCATGACGCTGCCGGGCAAG 360 consensus_4853#1 ------------------------------------------------------------ consensus_4853#2 ------------------------------------------------------------ consensus_4853#0 TGCGGCCTCACCTTGCCGGCGCACTGCTAGTGCTAGCTAGCTGATGGCAAGCACAAACTA 420 consensus_4853#1 ------------------------------------------------------------ consensus_4853#2 ------------------------------------------------------------ consensus_4853#0 CAGTGCGGCGACCTCGATCGCCATGTTGCTGCAATTCAATTATGCAGTCGTGACCACTAG 480 consensus_4853#1 -----------------------------------NTCCGCNANGCTNGGTNNGGTGNGC 25 consensus_4853#2 ------------------------------------------------------------ consensus_4853#0 CGCTACCAATATATAGCATATATATAGTAGTAATATTAATATATATGTCATACTATGCGA 540 consensus_4853#1 CNGAGGA-CGCGACA-GGGGAGATGAANAA-TTNGGCA-CATATATATATGNATTNATGC 81 consensus_4853#2 -AGAGGA-CGAGACAAGGGGAGATGAATAAATTTGGCAACATATATATATGTATTTATGC 58 consensus_4853#0 TCGATGAGCCCGGCAAGGGGAGATGAATAAATTTGGCA--ACATATATATGTATTTATGC 598 ** ** * * ** *********** ** ** **** * ********* *** **** consensus_4853#1 TCTTCTTTAGATAT----AAAAGATATGCGTGAGATGAANAGGTTGNGTGTTTAACCNAT 137 consensus_4853#2 TCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAAT 118 consensus_4853#0 TCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAAT 658 ******** *** ************** ****** ****** ********** ** consensus_4853#1 AATATATTNG-AATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTAT------CAAAA 190 consensus_4853#2 AATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATACTTTTCAAAA 178 consensus_4853#0 AATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTC-------------- 704 ******** * *********************************** consensus_4853#1 AAA------- 193 consensus_4853#2 AAAAAAAAAA 188 consensus_4853#0 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||