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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4853 cluster # 4853       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4853#0 length = 704 sequences # 1  
consensus_4853#1 length = 193 sequences # 1  
consensus_4853#2 length = 188 sequences # 1  

consensusID : consensus_4853#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence
                              [ACTAAATAATTACTCAAACCATCATCAGTAACAACCAGATTACAGTATTCATTCCCAAACATACAAATCATATCCATGGCCAAACAGGCGACAGCTGCGGTGCTCGCCGTCGCGTTGGTGCTCGCGGCGTCGGCGGGGCTCGCGCACGGCATCTGCAACCTGTCGGACGCGGGGCTCCAGGCGTGCAAGCCGGCGGCCGCCGTGCGCAACCCGGCGGACACGCCGTCGTCCGAGTGCTGCGACGCGCTGGCCGCCGCCGACCTGCCGTGCCTGTGCCGGTACAAGGGCTCCGCCGGCGCCCGCGTGTGGGTGAGGTTCTACGGGATCGACCTCAACCGCGCCATGACGCTGCCGGGCAAGTGCGGCCTCACCTTGCCGGCGCACTGCTAGTGCTAGCTAGCTGATGGCAAGCACAAACTACAGTGCGGCGACCTCGATCGCCATGTTGCTGCAATTCAATTATGCAGTCGTGACCACTAGCGCTACCAATATATAGCATATATATAGTAGTAATATTAATATATATGTCATACTATGCGATCGATGAGCCCGGCAAGGGGAGATGAATAAATTTGGCAACATATATATGTATTTATGCTCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTC]

[+] EMBL AK062503             [ACTAAATAATTACTCAAACCATCATCAGTAACAACCAGATTACAGTATTCATTCCCAAACATACAAATCATATCCATGGCCAAACAGGCGACAGCTGCGGTGCTCGCCGTCGCGTTGGTGCTCGCGGCGTCGGCGGGGCTCGCGCACGGCATCTGCAACCTGTCGGACGCGGGGCTCCAGGCGTGCAAGCCGGCGGCCGCCGTGCGCAACCCGGCGGACACGCCGTCGTCCGAGTGCTGCGACGCGCTGGCCGCCGCCGACCTGCCGTGCCTGTGCCGGTACAAGGGCTCCGCCGGCGCCCGCGTGTGGGTGAGGTTCTACGGGATCGACCTCAACCGCGCCATGACGCTGCCGGGCAAGTGCGGCCTCACCTTGCCGGCGCACTGCTAGTGCTAGCTAGCTGATGGCAAGCACAAACTACAGTGCGGCGACCTCGATCGCCATGTTGCTGCAATTCAATTATGCAGTCGTGACCACTAGCGCTACCAATATATAGCATATATATAGTAGTAATATTAATATATATGTCATACTATGCGATCGATGAGCCCGGCAAGGGGAGATGAATAAATTTGGCAACATATATATGTATTTATGCTCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTC]


>consensus_4853#0 ACTAAATAATTACTCAAACCATCATCAGTAACAACCAGATTACAGTATTCATTCCCAAAC ATACAAATCATATCCATGGCCAAACAGGCGACAGCTGCGGTGCTCGCCGTCGCGTTGGTG CTCGCGGCGTCGGCGGGGCTCGCGCACGGCATCTGCAACCTGTCGGACGCGGGGCTCCAG GCGTGCAAGCCGGCGGCCGCCGTGCGCAACCCGGCGGACACGCCGTCGTCCGAGTGCTGC GACGCGCTGGCCGCCGCCGACCTGCCGTGCCTGTGCCGGTACAAGGGCTCCGCCGGCGCC CGCGTGTGGGTGAGGTTCTACGGGATCGACCTCAACCGCGCCATGACGCTGCCGGGCAAG TGCGGCCTCACCTTGCCGGCGCACTGCTAGTGCTAGCTAGCTGATGGCAAGCACAAACTA CAGTGCGGCGACCTCGATCGCCATGTTGCTGCAATTCAATTATGCAGTCGTGACCACTAG CGCTACCAATATATAGCATATATATAGTAGTAATATTAATATATATGTCATACTATGCGA TCGATGAGCCCGGCAAGGGGAGATGAATAAATTTGGCAACATATATATGTATTTATGCTC TTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAA TATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTC



consensusID : consensus_4853#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 193
fasta sequence
                              [NTCCGCNANGCTNGGTNNGGTGNGCCNGAGGACGCGACAGGGGAGATGAANAATTNGGCACATATATATATGNATTNATGCTCTTCTTTAGATATAAAAGATATGCGTGAGATGAANAGGTTGNGTGTTTAACCNATAATATATTNGAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATCAAAAAAA]

[+] EMBL CA764802             [NTCCGCNANGCTNGGTNNGGTGNGCCNGAGGACGCGACAGGGGAGATGAANAATTNGGCACATATATATATGNATTNATGCTCTTCTTTAGATATAAAAGATATGCGTGAGATGAANAGGTTGNGTGTTTAACCNATAATATATTNGAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATCAAAAAAA]


>consensus_4853#1 NTCCGCNANGCTNGGTNNGGTGNGCCNGAGGACGCGACAGGGGAGATGAANAATTNGGCA CATATATATATGNATTNATGCTCTTCTTTAGATATAAAAGATATGCGTGAGATGAANAGG TTGNGTGTTTAACCNATAATATATTNGAATGATACTGATTTGAGTAAAAGAGGAAGTCGT TCTATCAAAAAAA



consensusID : consensus_4853#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence
                              [AGAGGACGAGACAAGGGGAGATGAATAAATTTGGCAACATATATATATGTATTTATGCTCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATACTTTTCAAAAAAAAAAAAAA]

[-] EMBL CA761217             [AGAGGACGAGACAAGGGGAGATGAATAAATTTGGCAACATATATATATGTATTTATGCTCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATACTTTTCAAAAAAAAAAAAAA]


>consensus_4853#2 AGAGGACGAGACAAGGGGAGATGAATAAATTTGGCAACATATATATATGTATTTATGCTC TTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAATAA TATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATACTTTTCAAAAAA AAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      ACTAAATAATTACTCAAACCATCATCAGTAACAACCAGATTACAGTATTCATTCCCAAAC 60
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      ATACAAATCATATCCATGGCCAAACAGGCGACAGCTGCGGTGCTCGCCGTCGCGTTGGTG 120
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      CTCGCGGCGTCGGCGGGGCTCGCGCACGGCATCTGCAACCTGTCGGACGCGGGGCTCCAG 180
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      GCGTGCAAGCCGGCGGCCGCCGTGCGCAACCCGGCGGACACGCCGTCGTCCGAGTGCTGC 240
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      GACGCGCTGGCCGCCGCCGACCTGCCGTGCCTGTGCCGGTACAAGGGCTCCGCCGGCGCC 300
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      CGCGTGTGGGTGAGGTTCTACGGGATCGACCTCAACCGCGCCATGACGCTGCCGGGCAAG 360
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      TGCGGCCTCACCTTGCCGGCGCACTGCTAGTGCTAGCTAGCTGATGGCAAGCACAAACTA 420
                                                                                  

consensus_4853#1      ------------------------------------------------------------
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      CAGTGCGGCGACCTCGATCGCCATGTTGCTGCAATTCAATTATGCAGTCGTGACCACTAG 480
                                                                                  

consensus_4853#1      -----------------------------------NTCCGCNANGCTNGGTNNGGTGNGC 25
consensus_4853#2      ------------------------------------------------------------
consensus_4853#0      CGCTACCAATATATAGCATATATATAGTAGTAATATTAATATATATGTCATACTATGCGA 540
                                                                                  

consensus_4853#1      CNGAGGA-CGCGACA-GGGGAGATGAANAA-TTNGGCA-CATATATATATGNATTNATGC 81
consensus_4853#2      -AGAGGA-CGAGACAAGGGGAGATGAATAAATTTGGCAACATATATATATGTATTTATGC 58
consensus_4853#0      TCGATGAGCCCGGCAAGGGGAGATGAATAAATTTGGCA--ACATATATATGTATTTATGC 598
                        ** ** *  * ** *********** ** ** ****  * ********* *** ****

consensus_4853#1      TCTTCTTTAGATAT----AAAAGATATGCGTGAGATGAANAGGTTGNGTGTTTAACCNAT 137
consensus_4853#2      TCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAAT 118
consensus_4853#0      TCTTCTTTCAGTATCATCAAAAGATATGCGTGTGATGAATAGGTTGGGTGTTTAACCAAT 658
                      ********   ***    ************** ****** ****** ********** **

consensus_4853#1      AATATATTNG-AATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTAT------CAAAA 190
consensus_4853#2      AATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTCTATACTTTTCAAAA 178
consensus_4853#0      AATATATTTGTAATGATACTGATTTGAGTAAAAGAGGAAGTCGTTC-------------- 704
                      ******** * ***********************************              

consensus_4853#1      AAA------- 193
consensus_4853#2      AAAAAAAAAA 188
consensus_4853#0      ----------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)