|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1399 fasta sequence
[AAAAAAAAAATCGATCCGCAAATGCGTCGGCGTTGCGTGCGAGCTCCGATCTCCTAAACCTCCTCCAATTCCCTCAACGAAATCTCTCTCTCGATCCGACTCTGCTCTCTATCCGGCCTCGATCACCCCCACCAACATCCTCCTCCGATTCCCTCGCCTTCTCCTTCTCCTCCTCCAACTTCTCGATGACTTCCACTATACTAAGCTAGCTAGCCCCCGCCGATCCCCGCGGGGTTTTAGTTTAGCTCCGCGCCACCCAATCGCCGCAGGTGATCTTTCCCGGTCAAGAACTCGCGATTCGGGGGCGGATACGGAGGAAGGAAATCTGTGGTGGATTCGGATCGAGCTCTTCGTTTTCTTGCTCTTTGTATAAATTGCGATCAGGGGCGGCGGAAACAAGGGTTCTTCTCTGTCTCTCTTCATTAGCGCCGGCGACGAGGTGAGGTGAGGTGGTGGTGGAGGCGATCGAAATGGGGTCGGTGCTGTGCTGCTTGGCCGACGACGGCCGCCCCGTCTGCTGCTTCCGCCTCCCATGGCCGATCTTCAACGCCGCTCACAACCACAACCACAACTCGGGTTCCATTGCTCGTCCAAGAGCGGATACACGAGTTGCGCCTGATCAAGGAAGAATTAGTCTCACTGCTCCATCACAGCATGATTCGATGGATACTTTCCGCTGCCCGCCAAGGCCCTTGCCTTGGGATGATCCTCGATTCAGCCATCATACAGAGCATCACCCACTAGTAGGAGGACATGACAAAGCTTCAACAACGTTCCACAAATCTGGTAGCCTTGGAGAAAGCAAGAATGCTGATAGCATATCTAATTCCAAAGCTGTCAAGGATGATGGGCCTTCCACAGCTGTGAAGGATGATGGATCATCAGTAAAACACCATTCAGATGGTCTGCACATTGGCAAAGAGCAAGTACATGATCTTTTCGACTTTGAGGACGACTGTCCAATATGCCTAGAAGAGTATGATTATGAGAATCCAAAGATGACATTACAATGCAACCACAATTTCCATCTTTGTTGTATTTATGAGTGGATGGAGAGAAGTCAAGCTTGCCCAGTCTGCTCAAAGGTAATGCTGTTCCATGAGGATTCATGATCATAATGCTGCAACGTTTCTGTGATGTTGGAGAGTGGAGACTCACGGGGACTGGATCACCTAGATTTGTGTACATAGCTTGACGAAAATCAAAGTCGCTAGATTGTTTGCTGAAACTTCCAGCGGCGCAAAGATTTTTTATTATTTTTTTGTTTCTGTAGAGCATATAATTCTTTTCTCATTTTTCAGAAAAAATTGGTAGCTTGTGTCAATCCACATATCACATTTCGATTGGATGTTACAGATGCGCGTTTGAGTGATTGCATTTGCTTCTGATGCTGAAATAC]
[+] EMBL AK108026 [AAAAAAAAAATCGATCCGCAAATGCGTCGGCGTTGCGTGCGAGCTCCGATCTCCTAAACCTCCTCCAATTCCCTCAACGAAATCTCTCTCTCGATCCGACTCTGCTCTCTATCCGGCCTCGATCACCCCCACCAACATCCTCCTCCGATTCCCTCGCCTTCTCCTTCTCCTCCTCCAACTTCTCGATGACTTCCACTATACTAAGCTAGCTAGCCCCCGCCGATCCCCGCGGGGTTTTAGTTTAGCTCCGCGCCACCCAATCGCCGCAGGTGATCTTTCCCGGTCAAGAACTCGCGATTCGGGGGCGGATACGGAGGAAGGAAATCTGTGGTGGATTCGGATCGAGCTCTTCGTTTTCTTGCTCTTTGTATAAATTGCGATCAGGGGCGGCGGAAACAAGGGTTCTTCTCTGTCTCTCTTCATTAGCGCCGGCGACGAGGTGAGGTGAGGTGGTGGTGGAGGCGATCGAAATGGGGTCGGTGCTGTGCTGCTTGGCCGACGACGGCCGCCCCGTCTGCTGCTTCCGCCTCCCATGGCCGATCTTCAACGCCGCTCACAACCACAACCACAACTCGGGTTCCATTGCTCGTCCAAGAGCGGATACACGAGTTGCGCCTGATCAAGGAAGAATTAGTCTCACTGCTCCATCACAGCATGATTCGATGGATACTTTCCGCTGCCCGCCAAGGCCCTTGCCTTGGGATGATCCTCGATTCAGCCATCATACAGAGCATCACCCACTAGTAGGAGGACATGACAAAGCTTCAACAACGTTCCACAAATCTGGTAGCCTTGGAGAAAGCAAGAATGCTGATAGCATATCTAATTCCAAAGCTGTCAAGGATGATGGGCCTTCCACAGCTGTGAAGGATGATGGATCATCAGTAAAACACCATTCAGATGGTCTGCACATTGGCAAAGAGCAAGTACATGATCTTTTCGACTTTGAGGACGACTGTCCAATATGCCTAGAAGAGTATGATTATGAGAATCCAAAGATGACATTACAATGCAACCACAATTTCCATCTTTGTTGTATTTATGAGTGGATGGAGAGAAGTCAAGCTTGCCCAGTCTGCTCAAAGGTAATGCTGTTCCATGAGGATTCATGATCATAATGCTGCAACGTTTCTGTGATGTTGGAGAGTGGAGACTCACGGGGACTGGATCACCTAGATTTGTGTACATAGCTTGACGAAAATCAAAGTCGCTAGATTGTTTGCTGAAACTTCCAGCGGCGCAAAGATTTTTTATTATTTTTTTGTTTCTGTAGAGCATATAATTCTTTTCTCATTTTTCAGAAAAAATTGGTAGCTTGTGTCAATCCACATATCACATTTCGATTGGATGTTACAGATGCGCGTTTGAGTGATTGCATTTGCTTCTGATGCTGAAATAC]
[+] EMBL CF280570 [ CCGACTCTGCTCTCTATCCGGCCTCGATCACCCCCACCAACATCCTCCTCCGATTCCCTCGCCTTCTCCTTCTCCTCCTCCAACTTCTCGATGACTTCCACTATACTAAGCTAGCTAGCCCCCGCCGATCCCCGCGGGGTTTTAGTTTAGCTCCGCGCCACCCAATCGCCGCAGGTGATCTTTCCCGGTCAAGAACTCGCGATTCGGGGGCGGATACGGAGGAAGGAAATCTGTGGTGGATTCGGATCGAGCTCTTCGTTTTCTTGCTCTTTGTATAAATTGCGATCAGGGGCGGCGGAAACAAGGGTTCTTCTCTGTCTCTCTTCATTA ]
consensusID : consensus_4855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[GAATGCTGATAGCATATCTAATTCCAAAGCTGTCAAGGATGATGGGCCTTCCACAGCTGTGAAGGATGATGGATCATCAGTAAAACACCATTCAGATGGTCTGCACATTGGCAAAGAGCAAGTACATGATCTTTTCGACTTTGAGGACGACTGTCCAATATGCCTAGAAGAGTATGATTATGAGAATCCAAAGATGACATTACAATGCAACCACGATTTCCATCTTTGTTGTATTTATGAGTGGATGGAGAGAAGTCAAGCTTGCCCAGTCCGCTCAAAGGTAATGCTGTTCCATGAGGATTCATGATCATAATGCTGCAACGTAAAAGAAATGTTGGAGAGTGGAGACTCACGGGGACTGGATCACCTAAAAAAATGTACATAGCTTGACGAAAATCAAAGTCGCTAGATTGTTTGCTGAAACTTCCAGCGGCGCAAAGATTTTTTATTATTTTTTTGTTTCCGTAGAGCATATAATTCTTTTCTCATTTTTCAGAAAAAATGGGTATGTTTGTGTCAAAAAAAAAAAAAA]
[-] EMBL CF280571 [GAATGCTGATAGCATATCTAATTCCAAAGCTGTCAAGGATGATGGGCCTTCCACAGCTGTGAAGGATGATGGATCATCAGTAAAACACCATTCAGATGGTCTGCACATTGGCAAAGAGCAAGTACATGATCTTTTCGACTTTGAGGACGACTGTCCAATATGCCTAGAAGAGTATGATTATGAGAATCCAAAGATGACATTACAATGCAACCACGATTTCCATCTTTGTTGTATTTATGAGTGGATGGAGAGAAGTCAAGCTTGCCCAGTCCGCTCAAAGGTAATGCTGTTCCATGAGGATTCATGATCATAATGCTGCAACGTAAAAGAAATGTTGGAGAGTGGAGACTCACGGGGACTGGATCACCTAAAAAAATGTACATAGCTTGACGAAAATCAAAGTCGCTAGATTGTTTGCTGAAACTTCCAGCGGCGCAAAGATTTTTTATTATTTTTTTGTTTCCGTAGAGCATATAATTCTTTTCTCATTTTTCAGAAAAAATGGGTATGTTTGTGTCAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4855#0 AAAAAAAAAATCGATCCGCAAATGCGTCGGCGTTGCGTGCGAGCTCCGATCTCCTAAACC 60
consensus_4855#1 ------------------------------------------------------------
consensus_4855#0 TCCTCCAATTCCCTCAACGAAATCTCTCTCTCGATCCGACTCTGCTCTCTATCCGGCCTC 120
consensus_4855#1 ------------------------------------------------------------
consensus_4855#0 GATCACCCCCACCAACATCCTCCTCCGATTCCCTCGCCTTCTCCTTCTCCTCCTCCAACT 180
consensus_4855#1 ------------------------------------------------------------
consensus_4855#0 TCTCGATGACTTCCACTATACTAAGCTAGCTAGCCCCCGCCGATCCCCGCGGGGTTTTAG 240
consensus_4855#1 ------------------------------------------------------------
consensus_4855#0 TTTAGCTCCGCGCCACCCAATCGCCGCAGGTGATCTTTCCCGGTCAAGAACTCGCGATTC 300
consensus_4855#1 ------------------------------------------------------------
consensus_4855#0 GGGGGCGGATACGGAGGAAGGAAATCTGTGGTGGATTCGGATCGAGCTCTTCGTTTTCTT 360
consensus_4855#1 ------------------------------------------------------------
consensus_4855#0 GCTCTTTGTATAAATTGCGATCAGGGGCGGCGGAAACAAGGGTTCTTCTCTGTCTCTCTT 420
consensus_4855#1 ------------------------------------------------------------
consensus_4855#0 CATTAGCGCCGGCGACGAGGTGAGGTGAGGTGGTGGTGGAGGCGATCGAAATGGGGTCGG 480
consensus_4855#1 ------------------------------------------------------------
consensus_4855#0 TGCTGTGCTGCTTGGCCGACGACGGCCGCCCCGTCTGCTGCTTCCGCCTCCCATGGCCGA 540
consensus_4855#1 ------------------------------------------------------------
consensus_4855#0 TCTTCAACGCCGCTCACAACCACAACCACAACTCGGGTTCCATTGCTCGTCCAAGAGCGG 600
consensus_4855#1 ------------------------------------------------------------
consensus_4855#0 ATACACGAGTTGCGCCTGATCAAGGAAGAATTAGTCTCACTGCTCCATCACAGCATGATT 660
consensus_4855#1 ------------------------------------------------------------
consensus_4855#0 CGATGGATACTTTCCGCTGCCCGCCAAGGCCCTTGCCTTGGGATGATCCTCGATTCAGCC 720
consensus_4855#1 ------------------------------------------------------------
consensus_4855#0 ATCATACAGAGCATCACCCACTAGTAGGAGGACATGACAAAGCTTCAACAACGTTCCACA 780
consensus_4855#1 ------------------------------------------------------------
consensus_4855#0 AATCTGGTAGCCTTGGAGAAAGCAAGAATGCTGATAGCATATCTAATTCCAAAGCTGTCA 840
consensus_4855#1 -------------------------GAATGCTGATAGCATATCTAATTCCAAAGCTGTCA 35
***********************************
consensus_4855#0 AGGATGATGGGCCTTCCACAGCTGTGAAGGATGATGGATCATCAGTAAAACACCATTCAG 900
consensus_4855#1 AGGATGATGGGCCTTCCACAGCTGTGAAGGATGATGGATCATCAGTAAAACACCATTCAG 95
************************************************************
consensus_4855#0 ATGGTCTGCACATTGGCAAAGAGCAAGTACATGATCTTTTCGACTTTGAGGACGACTGTC 960
consensus_4855#1 ATGGTCTGCACATTGGCAAAGAGCAAGTACATGATCTTTTCGACTTTGAGGACGACTGTC 155
************************************************************
consensus_4855#0 CAATATGCCTAGAAGAGTATGATTATGAGAATCCAAAGATGACATTACAATGCAACCACA 1020
consensus_4855#1 CAATATGCCTAGAAGAGTATGATTATGAGAATCCAAAGATGACATTACAATGCAACCACG 215
***********************************************************
consensus_4855#0 ATTTCCATCTTTGTTGTATTTATGAGTGGATGGAGAGAAGTCAAGCTTGCCCAGTCTGCT 1080
consensus_4855#1 ATTTCCATCTTTGTTGTATTTATGAGTGGATGGAGAGAAGTCAAGCTTGCCCAGTCCGCT 275
******************************************************** ***
consensus_4855#0 CAAAGGTAATGCTGTTCCATGAGGATTCATGATCATAATGCTGCAACGTTTCTGTGATGT 1140
consensus_4855#1 CAAAGGTAATGCTGTTCCATGAGGATTCATGATCATAATGCTGCAACGTAAAAGAAATGT 335
************************************************* * ****
consensus_4855#0 TGGAGAGTGGAGACTCACGGGGACTGGATCACCTAGATTTGTGTACATAGCTTGACGAAA 1200
consensus_4855#1 TGGAGAGTGGAGACTCACGGGGACTGGATCACCTAAAAAAATGTACATAGCTTGACGAAA 395
*********************************** * *******************
consensus_4855#0 ATCAAAGTCGCTAGATTGTTTGCTGAAACTTCCAGCGGCGCAAAGATTTTTTATTATTTT 1260
consensus_4855#1 ATCAAAGTCGCTAGATTGTTTGCTGAAACTTCCAGCGGCGCAAAGATTTTTTATTATTTT 455
************************************************************
consensus_4855#0 TTTGTTTCTGTAGAGCATATAATTCTTTTCTCATTTTTCAGAAAAAATTGGTA-GCTTGT 1319
consensus_4855#1 TTTGTTTCCGTAGAGCATATAATTCTTTTCTCATTTTTCAGAAAAAATGGGTATGTTTGT 515
******** *************************************** **** * ****
consensus_4855#0 GTCAATCCACATATCACATTTCGATTGGATGTTACAGATGCGCGTTTGAGTGATTGCATT 1379
consensus_4855#1 GTCAAAAAAAAAAAAAA------------------------------------------- 532
***** * * * *
consensus_4855#0 TGCTTCTGATGCTGAAATAC 1399
consensus_4855#1 --------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||