cluster # 4865

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Oryza sativa
cluster # 4865 cluster # 4865 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4865#0 length = 1075 sequences # 2

consensus_4865#1 length = 328 sequences # 1

consensusID : consensus_4865#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1075
fasta sequence

                              [TGACGCGTCACGGCCCAGTTGACTTCGGCCCATGACCCAATGAGTAGCCGCCTCCGCTTCCTCTTCTCCCTCGCCGCCGCCATCGCCGCAGCCTCCCTCCTCGCCGCCGCCCTCCGCCGCCGCGCGCCGCCCTCCGGCCTCGCCGCCCGCCTCGTCCCCGCGCCCATGGCGGCGGCGGCGGCCCGCAACCGGGGCTTCGTGCTGTGGCTGCACGGACTCGGCGACTCCGGCCCGGCCAACGAGCCCATCCGCAACTTCTTCTCCGCGCCGGAGTTCCGCCTCACCAAGTGGGCGTTCCCCTCCGCCCCGAACTCCCCCGTCTCCTGCAACCATGGCGCTGTGATGCCTTCATGGTTCGACATCCACGAGCTACCCATGAGCTCTGGTTCTCCACAAGATGACAGTGGGGTTCTTAAGGCTGTTGAAAATGTGCACGCCATGATTGATAAGGAGGTAGCTGATGGCATCCCTCCAGAGAACATATTTGTTTGTGGATTCAGTCAAGGAGGTGCTCTCACATTAGCAAGTGTTTTGCTTTATCCCAAGACTCTAGGTGGTGGCGCAGTGTTCAGTGGGTGGCTGCCTTTTGGTTCGTCAGTTACTGAGAGGATTTCACCTGAAGCAAGGAAGACTCCAATTCTGTGGTCACATGGAATAGCTGACAATGT-AGTATTGTTTGAAGCTGGTCAAGCTGGTCCACCTTTTTTGC-AAAATGCTGGTTTCAGTTGTGAATTTAAGGCATA-TCCAGGTCTTGGTCA-CTCGATTTCCAAGGAAGAGCTATATTCTCTTGAGTCTTGGATCAAGAATCATCTAAAGGCCTCTCAGGAGAAGGAAAATTAACATTGCTTTGGCCTGCCGTCACTCTGTGGTACATAAAATTTGGTGAGAATATGTTGACCTTTACGGACACTCATTTGGAAGTTTTTATTTGGGATTGATCAATGTGTCAACAGTTATTTGACTCGTAACGGCCATAGCCGCACATGTACAATCGCTGGAGTTTGTATGTTCCTGGCATGACCAACTGCACCTTAGAATTTACTATATAGTGACAAAGTATTGAATAAATACCCCG]

[+] EMBL AK069249             [TGACGCGTCACGGCCCAGTTGACTTCGGCCCATGACCCAATGAGTAGCCGCCTCCGCTTCCTCTTCTCCCTCGCCGCCGCCATCGCCGCAGCCTCCCTCCTCGCCGCCGCCCTCCGCCGCCGCGCGCCGCCCTCCGGCCTCGCCGCCCGCCTCGTCCCCGCGCCCATGGCGGCGGCGGCGGCCCGCAACCGGGGCTTCGTGCTGTGGCTGCACGGACTCGGCGACTCCGGCCCGGCCAACGAGCCCATCCGCAACTTCTTCTCCGCGCCGGAGTTCCGCCTCACCAAGTGGGCGTTCCCCTCCGCCCCGAACTCCCCCGTCTCCTGCAACCATGGCGCTGTGATGCCTTCATGGTTCGACATCCACGAGCTACCCATGAGCTCTGGTTCTCCACAAGATGACAGTGGGGTTCTTAAGGCTGTTGAAAATGTGCACGCCATGATTGATAAGGAGGTAGCTGATGGCATCCCTCCAGAGAACATATTTGTTTGTGGATTCAGTCAAGGAGGTGCTCTCACATTAGCAAGTGTTTTGCTTTATCCCAAGACTCTAGGTGGTGGCGCAGTGTTCAGTGGGTGGCTGCCTTTTGGTTCGTCAGTTACTGAGAGGATTTCACCTGAAGCAAGGAAGACTCCAATTCTGTGGTCACATGGAATAGCTGACAATGT AGTATTGTTTGAAGCTGGTCAAGCTGGTCCACCTTTTTTGC AAAATGCTGGTTTCAGTTGTGAATTTAAGGCATA TCCAGGTCTTGGTCA CTCGATTTCCAAGGAAGAGCTATATTCTCTTGAGTCTTGGATCAAGAATCATCTAAAGGCCTCTCAGGAGAAGGAAAATTAACATTGCTTTGGCCTGCCGTCACTCTGTGGTACATAAAATTTGGTGAGAATATGTTGACCTTTACGGACACTCATTTGGAAGTTTTTATTTGGGATTGATCAATGTGTCAACAGTTATTTGACTCGTAACGGCCATAGCCGCACATGTACAATCGCTGGAGTTTGTATGTTCCTGGCATGACCAACTGCACCTTAGAATTTACTATATAGTGACAAAGTATTGAATAAATACCCCG]
[+] EMBL D42763               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               cgggGGNCCCAGGGAAAAGCTGACAATGTAAGAATGGTTTGAANCGGGTCAAACTGGNCCACCTTTTTTGCAAAAATGCTGGTTTCAGTTGTGAATTTAAGGCATACCCCAGGTCTTGGTCACCCCGATTTCCAAGGAAGAGCTATATTCTCTTGAGCCTGGGATCAAGAATCATCTAAAGGCCTCTCAGGAGAAGGAAAATTAACATTGCTTTGGCCTGCCGTCACTCTGTGGTACATAAAATTTGGTGAGAATATGTTGACCTTTACGGACACTCATTTGGAAGTTTTTATTTGGGATTGATCAATGTGTCAACAGATATTTGACTCGTAACGGCCATAGCCGCACATGTACAATCGCTGGAGTTTGTATGTTCCTGGCATGACCAACTGCACCTTAGAATTTACTATATAGTGACAAAG                  ]




>consensus_4865#0
TGACGCGTCACGGCCCAGTTGACTTCGGCCCATGACCCAATGAGTAGCCGCCTCCGCTTC
CTCTTCTCCCTCGCCGCCGCCATCGCCGCAGCCTCCCTCCTCGCCGCCGCCCTCCGCCGC
CGCGCGCCGCCCTCCGGCCTCGCCGCCCGCCTCGTCCCCGCGCCCATGGCGGCGGCGGCG
GCCCGCAACCGGGGCTTCGTGCTGTGGCTGCACGGACTCGGCGACTCCGGCCCGGCCAAC
GAGCCCATCCGCAACTTCTTCTCCGCGCCGGAGTTCCGCCTCACCAAGTGGGCGTTCCCC
TCCGCCCCGAACTCCCCCGTCTCCTGCAACCATGGCGCTGTGATGCCTTCATGGTTCGAC
ATCCACGAGCTACCCATGAGCTCTGGTTCTCCACAAGATGACAGTGGGGTTCTTAAGGCT
GTTGAAAATGTGCACGCCATGATTGATAAGGAGGTAGCTGATGGCATCCCTCCAGAGAAC
ATATTTGTTTGTGGATTCAGTCAAGGAGGTGCTCTCACATTAGCAAGTGTTTTGCTTTAT
CCCAAGACTCTAGGTGGTGGCGCAGTGTTCAGTGGGTGGCTGCCTTTTGGTTCGTCAGTT
ACTGAGAGGATTTCACCTGAAGCAAGGAAGACTCCAATTCTGTGGTCACATGGAATAGCT
GACAATGTAGTATTGTTTGAAGCTGGTCAAGCTGGTCCACCTTTTTTGCAAAATGCTGGT
TTCAGTTGTGAATTTAAGGCATATCCAGGTCTTGGTCACTCGATTTCCAAGGAAGAGCTA
TATTCTCTTGAGTCTTGGATCAAGAATCATCTAAAGGCCTCTCAGGAGAAGGAAAATTAA
CATTGCTTTGGCCTGCCGTCACTCTGTGGTACATAAAATTTGGTGAGAATATGTTGACCT
TTACGGACACTCATTTGGAAGTTTTTATTTGGGATTGATCAATGTGTCAACAGTTATTTG
ACTCGTAACGGCCATAGCCGCACATGTACAATCGCTGGAGTTTGTATGTTCCTGGCATGA
CCAACTGCACCTTAGAATTTACTATATAGTGACAAAGTATTGAATAAATACCCCG

consensusID : consensus_4865#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [CCAGAGGTCGAGCCAAGGGGCTTTTAAAGGCCTCTCAGGAGAAGGAAAATTAGCATTGCTTTGGCCCGCCGTCACTTTGTGGTGCATAAAATTTGGTGAGAATATGTTGACCTTTTCGGACCCTCATTTGGAAGTTTTTATTTGGGATTGATCAATGTGTCAAAAGATATTTGTCTCGTAACGGCCATAGCCGCCCATGTCCAATCGCTGGAGTTTGTATGTTTCTGGCATGGCCAAATGCCCCTTAGAATTTCCTATATAGTGACAAAGTATTGAATAAATACCCCGTGTTCCCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761109             [CCAGAGGTCGAGCCAAGGGGCTTTTAAAGGCCTCTCAGGAGAAGGAAAATTAGCATTGCTTTGGCCCGCCGTCACTTTGTGGTGCATAAAATTTGGTGAGAATATGTTGACCTTTTCGGACCCTCATTTGGAAGTTTTTATTTGGGATTGATCAATGTGTCAAAAGATATTTGTCTCGTAACGGCCATAGCCGCCCATGTCCAATCGCTGGAGTTTGTATGTTTCTGGCATGGCCAAATGCCCCTTAGAATTTCCTATATAGTGACAAAGTATTGAATAAATACCCCGTGTTCCCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4865#1
CCAGAGGTCGAGCCAAGGGGCTTTTAAAGGCCTCTCAGGAGAAGGAAAATTAGCATTGCT
TTGGCCCGCCGTCACTTTGTGGTGCATAAAATTTGGTGAGAATATGTTGACCTTTTCGGA
CCCTCATTTGGAAGTTTTTATTTGGGATTGATCAATGTGTCAAAAGATATTTGTCTCGTA
ACGGCCATAGCCGCCCATGTCCAATCGCTGGAGTTTGTATGTTTCTGGCATGGCCAAATG
CCCCTTAGAATTTCCTATATAGTGACAAAGTATTGAATAAATACCCCGTGTTCCCGTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4865#0      TGACGCGTCACGGCCCAGTTGACTTCGGCCCATGACCCAATGAGTAGCCGCCTCCGCTTC 60
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      CTCTTCTCCCTCGCCGCCGCCATCGCCGCAGCCTCCCTCCTCGCCGCCGCCCTCCGCCGC 120
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      CGCGCGCCGCCCTCCGGCCTCGCCGCCCGCCTCGTCCCCGCGCCCATGGCGGCGGCGGCG 180
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      GCCCGCAACCGGGGCTTCGTGCTGTGGCTGCACGGACTCGGCGACTCCGGCCCGGCCAAC 240
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      GAGCCCATCCGCAACTTCTTCTCCGCGCCGGAGTTCCGCCTCACCAAGTGGGCGTTCCCC 300
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      TCCGCCCCGAACTCCCCCGTCTCCTGCAACCATGGCGCTGTGATGCCTTCATGGTTCGAC 360
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      ATCCACGAGCTACCCATGAGCTCTGGTTCTCCACAAGATGACAGTGGGGTTCTTAAGGCT 420
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      GTTGAAAATGTGCACGCCATGATTGATAAGGAGGTAGCTGATGGCATCCCTCCAGAGAAC 480
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      ATATTTGTTTGTGGATTCAGTCAAGGAGGTGCTCTCACATTAGCAAGTGTTTTGCTTTAT 540
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      CCCAAGACTCTAGGTGGTGGCGCAGTGTTCAGTGGGTGGCTGCCTTTTGGTTCGTCAGTT 600
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      ACTGAGAGGATTTCACCTGAAGCAAGGAAGACTCCAATTCTGTGGTCACATGGAATAGCT 660
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      GACAATGTAGTATTGTTTGAAGCTGGTCAAGCTGGTCCACCTTTTTTGCAAAATGCTGGT 720
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      TTCAGTTGTGAATTTAAGGCATATCCAGGTCTTGGTCACTCGATTTCCAAGGAAGAGCTA 780
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      TATTCTCTTGAGTCTTGGATCAAGAATCATCTAAAGGCCTCTCAGGAGAAGGAAAATTAA 840
consensus_4865#1      ------CCAGAGG-TCGAGCCAAGGGGCTTTTAAAGGCCTCTCAGGAGAAGGAAAATTAG 53
                            *  ***  * *   ****   * * **************************** 

consensus_4865#0      CATTGCTTTGGCCTGCCGTCACTCTGTGGTACATAAAATTTGGTGAGAATATGTTGACCT 900
consensus_4865#1      CATTGCTTTGGCCCGCCGTCACTTTGTGGTGCATAAAATTTGGTGAGAATATGTTGACCT 113
                      ************* ********* ****** *****************************

consensus_4865#0      TTACGGACACTCATTTGGAAGTTTTTATTTGGGATTGATCAATGTGTCAACAGTTATTTG 960
consensus_4865#1      TTTCGGACCCTCATTTGGAAGTTTTTATTTGGGATTGATCAATGTGTCAAAAGATATTTG 173
                      ** ***** ***************************************** ** ******

consensus_4865#0      ACTCGTAACGGCCATAGCCGCACATGTACAATCGCTGGAGTTTGTATGTTCCTGGCATGA 1020
consensus_4865#1      TCTCGTAACGGCCATAGCCGCCCATGTCCAATCGCTGGAGTTTGTATGTTTCTGGCATGG 233
                       ******************** ***** ********************** ******** 

consensus_4865#0      CCAACTGCACCTTAGAATTTACTATATAGTGACAAAGTATTGAATAAATACCCCG----- 1075
consensus_4865#1      CCAAATGCCCCTTAGAATTTCCTATATAGTGACAAAGTATTGAATAAATACCCCGTGTTC 293
                      **** *** *********** **********************************     

consensus_4865#0      -----------------------------------
consensus_4865#1      CCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 328