These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1455 fasta sequence [ACTCAGTATCCGTCTCGCTCTCCTGCCTCGCCGCCGGCGATCGATCGCCGGGGAGAGGGTCTCTCCCCCAAATGCCGCGCCGCCGCCTCCCTCTACTCCTCCTCCTCCCCATTACCCTCACCCTCTTCCTCCTCTTCCCCTCTCCCCCTCCCCCGCGGCCGCCGCCGCATCAGCCTCAGCCTCAGCCGCTCCCCTGCGGCGCCGCCCCCTCCGACGCCACCGCCGGCCGCTGGGTCCCCACCCGGGAGCCCTTGCCGCCGCCGCTCTACACCTCCTCCTGCCCCTTCCACCGCAACGCCTGGAACTGCCCCCGCAACAGCCGCCCACCCGTCGCCGCGCTCTCCTGGGCGCCCGCCCGCTGCGGCGGCGGCGCCGTCCCGAGGATCGACGCCGCGGAGTTCCTGGCCGTGGCCCGGGGGCGGCGGATCGGGCTCGTGGGGGACTCGCTGTCGGAGAACCTGGTCGTGGCGCTGCTGTGCGCGCTCCGGTCGGCGGACGGCGGCGCGAGCAAGTGGAAGCGGCGGGGCGCGTGGCGCGGCGGCTACTTCCCCAGGGATGACGTCATCGTCGCGTACCACCGCGCAGTTCTCCTCGCCAAGTACACGTGGCAGCCTGTAGAGAATTCCAAAGAGCTTCACAAGGATGGAATAAAGGGAACTTACAGAGTGGATGTTGACATTCCTGCTGATGAATGGGTAAATGTCACCAGGTTCTATGATGTGCTCATTTTCAACACTGGACATTGGTGGGGCCTGGATAAATTCCCAAAAGAGACCCCCCTTGTTTTCTACCGAGGAGGGAAACCAATTGAGCCGCCACTTGGCATCTACGATGGATTGAAAGTAGTCCTCAAAAGTATGGCCTCTTACATTGAAAGGGAGGTCCCAAGTAAAACACTGAAACTGTGGCGCTCACAGTCACCCAGGCACTTCTATGGAGGTGAATGGGATCACAATGGCAGCTGCGTGTCTGATCGGCTTCTACAAGAACACGAGCTCGACTTGT-GGTTCGATCCCAGGTTTGGAGGAGTGAACAAAGAAGCAAGGCTAGTGAATTCGGCGATTCAGGAGGCCCTGATTGGCACAGACATCCAGCTGCTCAACCTGACCTACATGAGCGAGTTCCGTGCCGATGCGCATCCGGCAATCTGGCTCGGAAAGAAGGACGCGGTGGCTGTATGGGGGCAGGACTGCATGCATTGGTGCCTTCCTGGCGTGCCGGACACTTGGGTCGACATCTTGGCTGCACGGATCTTGCATCACTTCAAGCAGGCAAATGGTTGATGACATGCTGAAGCTTGGACCATTGTGGCAACTGCACTGTAAATGTTGTGTGGGAACAAACACGATGAATGGCATGCTGTATTTAGAACAGGAGCATTAAAAAGCTAGGTAGCTACTCTTGTTGCCTGTAATTCTTTTCTTCTTATGGAAAACCAAGATAGGAGATGGTGGA] [+] EMBL AK069109 [ACTCAGTATCCGTCTCGCTCTCCTGCCTCGCCGCCGGCGATCGATCGCCGGGGAGAGGGTCTCTCCCCCAAATGCCGCGCCGCCGCCTCCCTCTACTCCTCCTCCTCCCCATTACCCTCACCCTCTTCCTCCTCTTCCCCTCTCCCCCTCCCCCGCGGCCGCCGCCGCATCAGCCTCAGCCTCAGCCGCTCCCCTGCGGCGCCGCCCCCTCCGACGCCACCGCCGGCCGCTGGGTCCCCACCCGGGAGCCCTTGCCGCCGCCGCTCTACACCTCCTCCTGCCCCTTCCACCGCAACGCCTGGAACTGCCCCCGCAACAGCCGCCCACCCGTCGCCGCGCTCTCCTGGGCGCCCGCCCGCTGCGGCGGCGGCGCCGTCCCGAGGATCGACGCCGCGGAGTTCCTGGCCGTGGCCCGGGGGCGGCGGATCGGGCTCGTGGGGGACTCGCTGTCGGAGAACCTGGTCGTGGCGCTGCTGTGCGCGCTCCGGTCGGCGGACGGCGGCGCGAGCAAGTGGAAGCGGCGGGGCGCGTGGCGCGGCGGCTACTTCCCCAGGGATGACGTCATCGTCGCGTACCACCGCGCAGTTCTCCTCGCCAAGTACACGTGGCAGCCTGTAGAGAATTCCAAAGAGCTTCACAAGGATGGAATAAAGGGAACTTACAGAGTGGATGTTGACATTCCTGCTGATGAATGGGTAAATGTCACCAGGTTCTATGATGTGCTCATTTTCAACACTGGACATTGGTGGGGCCTGGATAAATTCCCAAAAGAGACCCCCCTTGTTTTCTACCGAGGAGGGAAACCAATTGAGCCGCCACTTGGCATCTACGATGGATTGAAAGTAGTCCTCAAAAGTATGGCCTCTTACATTGAAAGGGAGGTCCCAAGTAAAACACTGAAACTGTGGCGCTCACAGTCACCCAGGCACTTCTATGGAGGTGAATGGGATCACAATGGCAGCTGCGTGTCTGATCGGCTTCTACAAGAACACGAGCTCGACTTGT GGTTCGATCCCAGGTTTGGAGGAGTGAACAAAGAAGCAAGGCTAGTGAATTCGGCGATTCAGGAGGCCCTGATTGGCACAGACATCCAGCTGCTCAACCTGACCTACATGAGCGAGTTCCGTGCCGATGCGCATCCGGCAATCTGGCTCGGAAAGAAGGACGCGGTGGCTGTATGGGGGCAGGACTGCATGCATTGGTGCCTTCCTGGCGTGCCGGACACTTGGGTCGACATCTTGGCTGCACGGATCTTGCATCACTTCAAGCAGGCAAATGGTTGATGACATGCTGAAGCTTGGACCATTGTGGCAACTGCACTGTAAATGTTGTGTGGGAACAAACACGATGAATGGCATGCTGTATTTAGAACAGGAGCATTAAAAAGCTAGGTAGCTACTCTTGTTGCCTGTAATTCTTTTCTTCTTATGGAAAACCAAGATAGGAGATGGTGGA] [+] EMBL C73803 [ CCTGCTGATGAATGGGTAAATGTCACCAGGTTCTATGATGTGCTCATTTTCAACACTGGACATTGGTGGGGCCTGGATAAATTCCCAAAAGAGACCCCCCTTGTTTTCTACCGAGGAGGGAAACCAATTGAGCCGCCACTTGGCATCTACGATGGATTGAAAGTAGTCCTCAAAAGTATGGCCTCTTACATTGAAAGGGAGGTCCCAAGTAAAACACTGAAACTGTGGCGCTCACAGTCACCCAGGCACTTCTATGGAGGTGAATGGGATCACAATGGCAGCTGCGTGTCTGATCGGCTTCTACAAGAACACGAGCTCGACTTGTGGGTTCGATCCCAGGTTTGGAGGAGTGAACNAAGAAGCAAGGCTAGTG ] consensusID : consensus_4866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [GTTGATGACATGGCGTGAAGCTGTGGACCATTTGTGGCAAACTGCAACTTGTAAAATTTTGTGTGGGAACAAAACACGATGAATGGCATGCTGTATTTAGAACACGGAGCACTTGAAAAGCTAGGTAGCTACTCTTGTTGCCTGTAATTATTTTCTTCTTTCTTATGGAAAACCAAGATAGGAGATGGTGGAGTTAACTGTTAAGTACACTTAAATACTTACTGAAGAAATTTTGTACTTGCACACTTGACGTTGATGAAACTGCAATTGCCTCAGTAGAGTGAAGCTTCACACTAAAAAA] [+] EMBL BI801625 [GTTGATGACATGGCGTGAAGCTGTGGACCATTTGTGGCAAACTGCAACTTGTAAAATTTTGTGTGGGAACAAAACACGATGAATGGCATGCTGTATTTAGAACACGGAGCACTTGAAAAGCTAGGTAGCTACTCTTGTTGCCTGTAATTATTTTCTTCTTTCTTATGGAAAACCAAGATAGGAGATGGTGGAGTTAACTGTTAAGTACACTTAAATACTTACTGAAGAAATTTTGTACTTGCACACTTGACGTTGATGAAACTGCAATTGCCTCAGTAGAGTGAAGCTTCACACTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4866#0 ACTCAGTATCCGTCTCGCTCTCCTGCCTCGCCGCCGGCGATCGATCGCCGGGGAGAGGGT 60 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 CTCTCCCCCAAATGCCGCGCCGCCGCCTCCCTCTACTCCTCCTCCTCCCCATTACCCTCA 120 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 CCCTCTTCCTCCTCTTCCCCTCTCCCCCTCCCCCGCGGCCGCCGCCGCATCAGCCTCAGC 180 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 CTCAGCCGCTCCCCTGCGGCGCCGCCCCCTCCGACGCCACCGCCGGCCGCTGGGTCCCCA 240 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 CCCGGGAGCCCTTGCCGCCGCCGCTCTACACCTCCTCCTGCCCCTTCCACCGCAACGCCT 300 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 GGAACTGCCCCCGCAACAGCCGCCCACCCGTCGCCGCGCTCTCCTGGGCGCCCGCCCGCT 360 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 GCGGCGGCGGCGCCGTCCCGAGGATCGACGCCGCGGAGTTCCTGGCCGTGGCCCGGGGGC 420 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 GGCGGATCGGGCTCGTGGGGGACTCGCTGTCGGAGAACCTGGTCGTGGCGCTGCTGTGCG 480 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 CGCTCCGGTCGGCGGACGGCGGCGCGAGCAAGTGGAAGCGGCGGGGCGCGTGGCGCGGCG 540 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 GCTACTTCCCCAGGGATGACGTCATCGTCGCGTACCACCGCGCAGTTCTCCTCGCCAAGT 600 consensus_4866#1 -----------------GTTGATGACATGGCGTGAAGCTGTGGACCATTTGTGGCAAACT 43 * * * * **** * * * * * * ** ** * consensus_4866#0 ACACGTGGCAGCCTGTAGAGAATTCCAAAGAGCTTCACAAGGATGGAATAAAGGGAACTT 660 consensus_4866#1 -------GCAACTTGTAAAATTTTGTGTGGGA----ACAAAACACGATGAATGGCATGCT 92 *** * **** * ** * **** ** ** ** * * consensus_4866#0 ACAGAGTGGATGTTGA-CATTCCTGCTGATGAATGGGTAAATGTCACCAGGTTCTATGAT 719 consensus_4866#1 GTATTTAGAACACGGAGCACTTGAAAAGCTAGGTAGCTAC-TCTTGTTGCCTGTAATTAT 151 * * * ** ** * * * * * ** * * * ** ** consensus_4866#0 GTGCTCATTTTCAACACTGGACATTGGTGGGGCCTGGATAAATTCCCAAAAGAGACCCCC 779 consensus_4866#1 TTTCTTCTTTCTTATGGAAAACCAAGATAGGAGATGGTGGAGTTAACTGTTAAG-TACAC 210 * ** *** * ** * * ** *** * ** * ** * * consensus_4866#0 CTTGTTTTCTACCGAGGAGGGAAACCAATTGAGCCGCCACTTGGCATCTACGATGGATTG 839 consensus_4866#1 TTAAATACTTACTGAAGAAATTTTGTACTTGCAC----ACTTGACGTTGATGA--AACTG 264 * * *** ** ** * *** * ***** * * * ** * ** consensus_4866#0 AAAGTAGTCCTCAAAAGTATGGCCTCTTACATTGAAAGGGAGGTCCCAAGTAAAACACTG 899 consensus_4866#1 CAATTG--CCTCAGTAGAGTGAAGCTTCACACTAAAAAA--------------------- 301 ** * ***** ** ** * *** * *** consensus_4866#0 AAACTGTGGCGCTCACAGTCACCCAGGCACTTCTATGGAGGTGAATGGGATCACAATGGC 959 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 AGCTGCGTGTCTGATCGGCTTCTACAAGAACACGAGCTCGACTTGTGGTTCGATCCCAGG 1019 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 TTTGGAGGAGTGAACAAAGAAGCAAGGCTAGTGAATTCGGCGATTCAGGAGGCCCTGATT 1079 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 GGCACAGACATCCAGCTGCTCAACCTGACCTACATGAGCGAGTTCCGTGCCGATGCGCAT 1139 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 CCGGCAATCTGGCTCGGAAAGAAGGACGCGGTGGCTGTATGGGGGCAGGACTGCATGCAT 1199 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 TGGTGCCTTCCTGGCGTGCCGGACACTTGGGTCGACATCTTGGCTGCACGGATCTTGCAT 1259 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 CACTTCAAGCAGGCAAATGGTTGATGACATGCTGAAGCTTGGACCATTGTGGCAACTGCA 1319 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 CTGTAAATGTTGTGTGGGAACAAACACGATGAATGGCATGCTGTATTTAGAACAGGAGCA 1379 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 TTAAAAAGCTAGGTAGCTACTCTTGTTGCCTGTAATTCTTTTCTTCTTATGGAAAACCAA 1439 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 GATAGGAGATGGTGGA 1455 consensus_4866#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||