cluster # 4876

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Oryza sativa
cluster # 4876 cluster # 4876 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4876#0 length = 537 sequences # 2

consensus_4876#1 length = 346 sequences # 1

consensusID : consensus_4876#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 537
fasta sequence

                              [TAGTGCTTCTGTGTATCTCCCCTCTATGNATCAAGGGAGGAGAGATGCGGAGATCAGTGATCNGGAGGCATGTCGCAGTATTTGCCTCTNTGACAAAACTCAACTATAACAAGTCCCATAATTTCCATTGTAGTTGGAAGTGAAAAAGCAGCACTTAGATCTGGAAGGGATATGCTAAGATCTGGATTTCATGTC-ACGCCAATCCGACCACCCACCAGTACCGCCCAACTCATG-CAGGTTGCGAATAACTCTCA-GTGCTTCTCATTCTTCGGATGACATCAAAAGGCTGGTGGATGCGCTGACCCGTGGCTCCCTCACAAACATGATATTCAGATATATGCTGTGGCATCAAAGCTCTAAACAATGATTCATCCGAGTGTTCAGCTCTAAACATTAGCTGAGATCCCACCGGATGATATGGGAGAAAAGGGGATAAGTTAGTGCTGGTTGACGCGATTAATACTGGGATATCTTTGTATTACAGCACAATCAATATGAATATGAAACATAACTGATGAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BM419384             [TAGTGCTTCTGTGTATCTCCCCTCTATGNATCAAGGGAGGAGAGATGCGGAGATCAGTGATCNGGAGGCATGTCGCAGTATTTGCCTCTNTGACAAAACTCAACTATAACAAGTCCCATAATTTCCATTGTAGTTGGAAGTGAAAAAGCAGCACTTAGATCTGGAAGGGATATGCTAAGATCTGGATTTCATGTC ACGCCAATCCGACCACCCACCAGTACCGCCCAACTCATG CAGGTTGCGAATAACTCTCA GTGCTTCTCATTCTTCGGATGACATCAAAAGGCTGGTGGATGCGCTGACCCGTGGCTCCCTCACAAACATGATATTCAGATATATGCTGTGGCATCAAAGCTCTAAACAATGATTCATCCGAGTGTTCAGCTCTAAACATTAGCTGAGATCCCACCGGATGATATGGGAGAAAAGGGGATAAGTTAGTGCTGGTTGACGCGATTAATACTGGGATATCTTTGTATTACAGCACAATCAATATGAATATGAAACATAACTGATGAAAAAAAAAA          ]
[+] EMBL BI808564             [                                                                                                                                         AAGTGAAAAA CAGCACTTAGATCT    GGGATATGCTAAGATCTGGATTTCATGTCAACGCCAATCCGACCACCCA CAGT CCGCCCAACTCATGCCAGGTTGCGAATAACTCTCAGGTGCTTCTCATTCTTCGGATGACATC AAAGGCTGGTGGATGCGCTGACCCGTGGCTCCCTCAC AACATGATATTCAGATATATGCTGTGGCATC AAGCTCTAAACCATGATTCATCCGAGTGTTCAGCTCTAAACATTAGCTGAGATCCCACCGGATGATATGGGAGAAAAGGGGATAAGTTAGTGCTGGTTGACGCGATTAATACTGGGATATCTTTGTATTACAGCACAATCAATATGAATATGAAACATAACTGATGAAACAGTACTAAAAAAAAAA]




>consensus_4876#0
TAGTGCTTCTGTGTATCTCCCCTCTATGNATCAAGGGAGGAGAGATGCGGAGATCAGTGA
TCNGGAGGCATGTCGCAGTATTTGCCTCTNTGACAAAACTCAACTATAACAAGTCCCATA
ATTTCCATTGTAGTTGGAAGTGAAAAAGCAGCACTTAGATCTGGAAGGGATATGCTAAGA
TCTGGATTTCATGTCACGCCAATCCGACCACCCACCAGTACCGCCCAACTCATGCAGGTT
GCGAATAACTCTCAGTGCTTCTCATTCTTCGGATGACATCAAAAGGCTGGTGGATGCGCT
GACCCGTGGCTCCCTCACAAACATGATATTCAGATATATGCTGTGGCATCAAAGCTCTAA
ACAATGATTCATCCGAGTGTTCAGCTCTAAACATTAGCTGAGATCCCACCGGATGATATG
GGAGAAAAGGGGATAAGTTAGTGCTGGTTGACGCGATTAATACTGGGATATCTTTGTATT
ACAGCACAATCAATATGAATATGAAACATAACTGATGAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_4876#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [CCGCCCAACTCATGCAGGTTGCGNATAACTCTCAGTGCTTCTCATTCTTCGGATGNCATCAAAAGGCTGGTGGATGCCTGNCGCCGTGGCTCCCTCACAAACATGATATTCAGATATATGCTGTGGCATCAAAGCTNTAAACAATGATTCATCCGAGTGTTCAGCTCATCAAGCTTCAAGAAGTANCATTAGCTGAGATCCCNCCGGATGATATGGGAGAAAAGGGGATAAGTTAGTGCTGGTTGACGCGATTAATACTGGGATATCTTTGTATTNCAGCACAATCAATATGAATATGAAACATAACTGATGAAACAGTACTAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU094796             [CCGCCCAACTCATGCAGGTTGCGNATAACTCTCAGTGCTTCTCATTCTTCGGATGNCATCAAAAGGCTGGTGGATGCCTGNCGCCGTGGCTCCCTCACAAACATGATATTCAGATATATGCTGTGGCATCAAAGCTNTAAACAATGATTCATCCGAGTGTTCAGCTCATCAAGCTTCAAGAAGTANCATTAGCTGAGATCCCNCCGGATGATATGGGAGAAAAGGGGATAAGTTAGTGCTGGTTGACGCGATTAATACTGGGATATCTTTGTATTNCAGCACAATCAATATGAATATGAAACATAACTGATGAAACAGTACTAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4876#1
CCGCCCAACTCATGCAGGTTGCGNATAACTCTCAGTGCTTCTCATTCTTCGGATGNCATC
AAAAGGCTGGTGGATGCCTGNCGCCGTGGCTCCCTCACAAACATGATATTCAGATATATG
CTGTGGCATCAAAGCTNTAAACAATGATTCATCCGAGTGTTCAGCTCATCAAGCTTCAAG
AAGTANCATTAGCTGAGATCCCNCCGGATGATATGGGAGAAAAGGGGATAAGTTAGTGCT
GGTTGACGCGATTAATACTGGGATATCTTTGTATTNCAGCACAATCAATATGAATATGAA
ACATAACTGATGAAACAGTACTAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4876#0      TAGTGCTTCTGTGTATCTCCCCTCTATGNATCAAGGGAGGAGAGATGCGGAGATCAGTGA 60
consensus_4876#1      ------------------------------------------------------------
                                                                                  

consensus_4876#0      TCNGGAGGCATGTCGCAGTATTTGCCTCTNTGACAAAACTCAACTATAACAAGTCCCATA 120
consensus_4876#1      ------------------------------------------------------------
                                                                                  

consensus_4876#0      ATTTCCATTGTAGTTGGAAGTGAAAAAGCAGCACTTAGATCTGGAAGGGATATGCTAAGA 180
consensus_4876#1      ------------------------------------------------------------
                                                                                  

consensus_4876#0      TCTGGATTTCATGTCACGCCAATCCGACCACCCACCAGTACCGCCCAACTCATGCAGGTT 240
consensus_4876#1      ----------------------------------------CCGCCCAACTCATGCAGGTT 20
                                                              ********************

consensus_4876#0      GCGAATAACTCTCAGTGCTTCTCATTCTTCGGATGACATCAAAAGGCTGGTGGATGCGCT 300
consensus_4876#1      GCGNATAACTCTCAGTGCTTCTCATTCTTCGGATGNCATCAAAAGGCTGGTGGATGCCTG 80
                      *** ******************************* *********************   

consensus_4876#0      GACCCGTGGCTCCCTCACAAACATGATATTCAGATATATGCTGTGGCATCAAAGCTCTAA 360
consensus_4876#1      NCGCCGTGGCTCCCTCACAAACATGATATTCAGATATATGCTGTGGCATCAAAGCTNTAA 140
                         ***************************************************** ***

consensus_4876#0      ACAATGATTCATCCGAGTGTTCAGCTCTA---------------AACATTAGCTGAGATC 405
consensus_4876#1      ACAATGATTCATCCGAGTGTTCAGCTCATCAAGCTTCAAGAAGTANCATTAGCTGAGATC 200
                      ***************************                 * **************

consensus_4876#0      CCACCGGATGATATGGGAGAAAAGGGGATAAGTTAGTGCTGGTTGACGCGATTAATACTG 465
consensus_4876#1      CCNCCGGATGATATGGGAGAAAAGGGGATAAGTTAGTGCTGGTTGACGCGATTAATACTG 260
                      ** *********************************************************

consensus_4876#0      GGATATCTTTGTATTACAGCACAATCAATATGAATATGAAACATAACTGATGAAA----- 520
consensus_4876#1      GGATATCTTTGTATTNCAGCACAATCAATATGAATATGAAACATAACTGATGAAACAGTA 320
                      *************** ***************************************     

consensus_4876#0      --AAAAAAAAAAAAAAAAA------- 537
consensus_4876#1      CTAAAAAAAAAAAAAAAAAAAAAAAA 346
                        *****************