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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2403 fasta sequence
[CAACAAGAGAGTGAGAGAGGAGCAAAAGCTTTGGCTGGCCGTCCCCCCTGTTAAAATGTGATGTCCAATCCATGGGATTGCGTCTAGTTTAGTCCCCCACTCCTCTCCTGGTTATGGGATCCGGCGAGGTGGATGGACGCGCATTGGAGCAGCAACAGTAGCGGCGGGGAAGAAGGCGGCGGGGGATCTGGATCCGAGGCACCACCACCACCGGGTCACCCACGGCGGCGACGGCGGCGGCGTAGGAGGAGGAGGAAGCGGGGGACAGGAGGAGGCAGATGAGCAGCAGCAGCAGCAGCACGACCACCACCGGCTTCTCCAGCTCCACCACCACCAGGGTGTGCAGCAGGACCAAGAACCGCCGCCTGTTCCCGTCTTCCACCTCCAGCCGGCGTCCGTGAGGCAGCTGTCGGGCTCCTCCGCCGAGTATGCCCTTCTCTCGCCCATGGGCGACGCCGGCGGCCACTCCCACCACCACCAACACGGCTTCCAGCCTCAGCTCCTCTCCTTCGGTGGCGTCGGCCACCACCACCACCTGCATCAGTTCACGGCGCAGCCACAGCCCCCCGCCGCGTCCCACACTCGGGGTCGTGGAGGTGGAGGTGAGATTGTCCCCGCGACGACAACTCCACGGTCGAGGGGCGGAGGCGGCGGCGGCGGCGGGGAGATCGTGGCGGTGCAGGGCGGGCACATTGTGCGGTCGACAGGGCGGAAGGACCGGCACAGCAAGGTCTGCACGGCGCGCGGGCCGCGCGACCGCCGCGTGCGGCTGTCGGCGCACACCGCCATCCAGTTCTACGACGTGCAGGACCGGCTGGGCTACGACCGCCCGAGCAAGGCGGTGGACTGGCTCATCAAGAACGCCAAGGACGCCATCGACAAGCTCGACGTGCTGCCGGCGTGGCAGCCCACTGCCGGCGGCGCAGGCGCGGGCAATGCCGCCGCGCCGCCGTCCTCCTCGACCCACCCCGACTCCGCCGAGAACTCCGACGACCAGGCGCAGGCCATCACCGTCGCGCACACCGCCTTCGACTTCGCCGGCGGGGGCAGCGGCGGGACCAGCTTCCTCCCGCCGTCGCTCGACTCGGACGCCATAGCCGACACGATCAAGTCCTTCTTCCCCATGGGTGGCACCGCAGGCGGGGAGGCATCGTCGTCCACCACGGCGGCGCAGTCGTCGGCCATGGGTTTCCAGAGCTACACGCCTGACCTCCTGTCCCGCACCGGCAGCCAGAGCCAGGAGCTCCGGCTGTCGCTGCAGTCCTTACCAGACCCCATGTTCCACCACCAGCAACATCGCCATGGCGGCGGCGGCGGCGGCGGCAATGGCACCACGCAGCAGGCGCTCTTCTCCGGCGCCGCCA-ATTAC-TCGTTC-GGC-GGCGGAGCCATGTGGGCCACCGAGCAGCAGGCGCAGAACC-AGCGCATGCTGCCGT-GGAACGTGCCCGACCCCGGCGGCGGCGGCGGCGCCGCCTACCTGTTCAACGTGTCGCAGCAAGCGGCGCATATGCAGGCGGCGGCTGCGGCGCTGGGTGGCCACCAGAGCCAGTTCTTCTTCCAGAGGGGACCCCTTCAGTCCAGTAACCAGCCCTCCGAGCGAGGATGGCCGGAGACCGTCGAAGCCGACAACCAGATGAGCCACCACCAAGGAGGGCTGAGCCCCTCCGTGTCGGCGGCCATCGGTTTTGCCGCTCCCGGCATCGGCTTCTCCGGCTTCCGCCTCCCCGCGAGGATACAGGGCGACGAGGAGCACAACGGCGGCGGCGGCGGCAATGGCGACAAGCCGCCGCCGCCGTCGTCTGTCTCCTCGGCTTCTCACCACTGACCGCAGCAGTGGCGAGCAGATGACTTCACCACCACCAATCCACCATGAGCAAACACCACACCATGTACCAGACTATCAGCTAGCTCCTCCACTTCCATCACGGAATTGTCGATTGCATTCGGGAGGAGCAAAGTTTGGAGGTAGCACAAGTGCACTACTACTGATGCTACTACATATCGGTTGGTTGGTTGGTTGGTTTTCCATCGATCTCTTCTGCTGCTGCGCATGTCATTGGTTTTTGTTTCAAGAATTCACTCGGAGCTTCTTAGAATTAGGCTTGTGAGAATGCAGCAACACGATGGCAAGCTTTAGCTTAGCTTAGCAAGCCTCTGTGTCTGTTGGCTGTTGCGTTGCGCTAGGTGTAGTTGATCGATGTAGGTTCGAGCTTGCTTTGCTTTGTTTTGATTTTTACTCTTTTGTTGCTGATGCATGGACATGCTTTTGCTTCCTCCTGTGGGTTCAGGAGCAGTTGCTACTAGACCGATGTTGTTCTCAAAACTGATAAGTGGGATGGTGATGGATTGGGAGAGGAGCCTATCTTTCATCTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AB071805 [CAACAAGAGAGTGAGAGAGGAGCAAAAGCTTTGGCTGGCCGTCCCCCCTGTTAAAATGTGATGTCCAATCCATGGGATTGCGTCTAGTTTAGTCCCCCACTCCTCTCCTGGTTATGGGATCCGGCGAGGTGGATGGACGCGCATTGGAGCAGCAACAGTAGCGGCGGGGAAGAAGGCGGCGGGGGATCTGGATCCGAGGCACCACCACCACCGGGTCACCCACGGCGGCGACGGCGGCGGCGTAGGAGGAGGAGGAAGCGGGGGACAGGAGGAGGCAGATGAGCAGCAGCAGCAGCAGCACGACCACCACCGGCTTCTCCAGCTCCACCACCACCAGGGTGTGCAGCAGGACCAAGAACCGCCGCCTGTTCCCGTCTTCCACCTCCAGCCGGCGTCCGTGAGGCAGCTGTCGGGCTCCTCCGCCGAGTATGCCCTTCTCTCGCCCATGGGCGACGCCGGCGGCCACTCCCACCACCACCAACACGGCTTCCAGCCTCAGCTCCTCTCCTTCGGTGGCGTCGGCCACCACCACCACCTGCATCAGTTCACGGCGCAGCCACAGCCCCCCGCCGCGTCCCACACTCGGGGTCGTGGAGGTGGAGGTGAGATTGTCCCCGCGACGACAACTCCACGGTCGAGGGGCGGAGGCGGCGGCGGCGGCGGGGAGATCGTGGCGGTGCAGGGCGGGCACATTGTGCGGTCGACAGGGCGGAAGGACCGGCACAGCAAGGTCTGCACGGCGCGCGGGCCGCGCGACCGCCGCGTGCGGCTGTCGGCGCACACCGCCATCCAGTTCTACGACGTGCAGGACCGGCTGGGCTACGACCGCCCGAGCAAGGCGGTGGACTGGCTCATCAAGAACGCCAAGGACGCCATCGACAAGCTCGACGTGCTGCCGGCGTGGCAGCCCACTGCCGGCGGCGCAGGCGCGGGCAATGCCGCCGCGCCGCCGTCCTCCTCGACCCACCCCGACTCCGCCGAGAACTCCGACGACCAGGCGCAGGCCATCACCGTCGCGCACACCGCCTTCGACTTCGCCGGCGGGGGCAGCGGCGGGACCAGCTTCCTCCCGCCGTCGCTCGACTCGGACGCCATAGCCGACACGATCAAGTCCTTCTTCCCCATGGGTGGCACCGCAGGCGGGGAGGCATCGTCGTCCACCACGGCGGCGCAGTCGTCGGCCATGGGTTTCCAGAGCTACACGCCTGACCTCCTGTCCCGCACCGGCAGCCAGAGCCAGGAGCTCCGGCTGTCGCTGCAGTCCTTACCAGACCCCATGTTCCACCACCAGCAACATCGCCATGGCGGCGGCGGCGGCGGCGGCAATGGCACCACGCAGCAGGCGCTCTTCTCCGGCGCCGCCA ATTAC TCGTTC GGC GGCGGAGCCATGTGGGCCACCGAGCAGCAGGCGCAGAACC AGCGCATGCTGCCGT GGAACGTGCCCGACCCCGGCGGCGGCGGCGGCGCCGCCTACCTGTTCAACGTGTCGCAGCAAGCGGCGCATATGCAGGCGGCGGCTGCGGCGCTGGGTGGCCACCAGAGCCAGTTCTTCTTCCAGAGGGGACCCCTTCAGTCCAGTAACCAGCCCTCCGAGCGAGGATGGCCGGAGACCGTCGAAGCCGACAACCAGATGAGCCACCACCAAGGAGGGCTGAGCCCCTCCGTGTCGGCGGCCATCGGTTTTGCCGCTCCCGGCATCGGCTTCTCCGGCTTCCGCCTCCCCGCGAGGATACAGGGCGACGAGGAGCACAACGGCGGCGGCGGCGGCAATGGCGACAAGCCGCCGCCGCCGTCGTCTGTCTCCTCGGCTTCTCACCACTGACCGCAGCAGTGGCGAGCAGATGACTTCACCACCACCAATCCACCATGAGCAAACACCACACCATGTACCAGACTATCAGCTAGCTCCTCCACTTCCATCACGGAATTGTCGATTGCATTCGGGAGGAGCAAAGTTTGGAGGTAGCACAAGTGCACTACTACTGATGCTACTACATATCGGTTGGTTGGTTGGTTGGTTTTCCATCGATCTCTTCTGCTGCTGCGCATGTCATTGGTTTTTGTTTCAAGAATTCACTCGGAGCTTCTTAGAATTAGGCTTGTGAGAATGCAGCAACACGATGGCAAGCTTTAGCTTAGCTTAGCAAGCCTCTGTGTCTGTTGGCTGTTGCGTTGCGCTAGGTGTAGTTGATCGATGTAGGTTCGAGCTTGCTTTGCTTTGTTTTGATTTTTACTCTTTTGTTGCTGATGCATGGACATGCTTTTGCTTCCTCCTGTGGGTTCAGGAGCAGTTGCTACTAGACCGATGTTGTTCTCAAAACTGATAAGTGGGATGGTGATGGATTGGGAGAGGAGCCTATCTTTCATCTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU094757 [ ACACCGCCTTCGACTTCGCCGGCGGGGGCAGCGGCGGGACCAGCTTCCTCCCGCCGTCGCTCGACTCGGACGCCATAGCCGACACGATCAAGTCCTTCTTCCCCATGGGTGGCACCGCA GCGGGGAGGCATCGTCGTCCACCACGGCGGCGCAGTCGTCGGCCATGGGTTTCCAGAGCTACACGCCTGACCTCCTGTCCCGCACCGGCAGCCAGAGCCAGGAGCTCCGGCTGTCGCTGCAGTCCTTACCAGACCCCATGTTCCACCACCAGCAACATCGCCATGGCGGCGGCGGCGGCGGCGGCAATGGCACCACGCAGCAGGCGCTCTTCTCCGGCGCCGCCANATTACTTCGTTCGGGCGGGCGGAACCATGTGGGCCACCGAGCAGCAGGCGCAGAACCAAACGNATGCTGCCGTGGGAAAGTGCCCGAANCCGGgc ]
consensusID : consensus_4877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence
[GGNGCAAAGTTTGGAGGTAAGCACAAGTGCACTACTACTGATGCTACTACATANCGGTTGGTTGGTTGGTTGGTTTTCCATCGATCTCTTCTGCTCTGCGCATGTCATTGGTTTTTGTTTCAAGAATTCACTCGGAGCTTCTTAGAATTAGGCTTGTGAGAATGCAGCAACACGATGGCAAGCTTTAGCTTAGCTTAGCAANCCTCTGTGTCTGTTGGCTGTTGCGTTGCGCTAGGTGTAGTTGATCGATGTAGGTTCGAGCTTGCTTTGCTTTGTTTTGATTTTTACTCTTTTGTTGCTGATGCATGGACATGCTTTTGCTTCCTCCTGTGGGTTCAGGAGCAGTTGCTACTAGACCGATGTTGTTCTCAAAACTGATAAGTGGGATGGTGATGGATTGGGNGAAAAAAAAAAA]
[+] EMBL AU029719 [GGNGCAAAGTTTGGAGGTAAGCACAAGTGCACTACTACTGATGCTACTACATANCGGTTGGTTGGTTGGTTGGTTTTCCATCGATCTCTTCTGCTCTGCGCATGTCATTGGTTTTTGTTTCAAGAATTCACTCGGAGCTTCTTAGAATTAGGCTTGTGAGAATGCAGCAACACGATGGCAAGCTTTAGCTTAGCTTAGCAANCCTCTGTGTCTGTTGGCTGTTGCGTTGCGCTAGGTGTAGTTGATCGATGTAGGTTCGAGCTTGCTTTGCTTTGTTTTGATTTTTACTCTTTTGTTGCTGATGCATGGACATGCTTTTGCTTCCTCCTGTGGGTTCAGGAGCAGTTGCTACTAGACCGATGTTGTTCTCAAAACTGATAAGTGGGATGGTGATGGATTGGGNGAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4877#0 CAACAAGAGAGTGAGAGAGGAGCAAAAGCTTTGGCTGGCCGTCCCCCCTGTTAAAATGTG 60
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 ATGTCCAATCCATGGGATTGCGTCTAGTTTAGTCCCCCACTCCTCTCCTGGTTATGGGAT 120
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CCGGCGAGGTGGATGGACGCGCATTGGAGCAGCAACAGTAGCGGCGGGGAAGAAGGCGGC 180
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 GGGGGATCTGGATCCGAGGCACCACCACCACCGGGTCACCCACGGCGGCGACGGCGGCGG 240
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CGTAGGAGGAGGAGGAAGCGGGGGACAGGAGGAGGCAGATGAGCAGCAGCAGCAGCAGCA 300
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CGACCACCACCGGCTTCTCCAGCTCCACCACCACCAGGGTGTGCAGCAGGACCAAGAACC 360
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 GCCGCCTGTTCCCGTCTTCCACCTCCAGCCGGCGTCCGTGAGGCAGCTGTCGGGCTCCTC 420
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CGCCGAGTATGCCCTTCTCTCGCCCATGGGCGACGCCGGCGGCCACTCCCACCACCACCA 480
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 ACACGGCTTCCAGCCTCAGCTCCTCTCCTTCGGTGGCGTCGGCCACCACCACCACCTGCA 540
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 TCAGTTCACGGCGCAGCCACAGCCCCCCGCCGCGTCCCACACTCGGGGTCGTGGAGGTGG 600
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 AGGTGAGATTGTCCCCGCGACGACAACTCCACGGTCGAGGGGCGGAGGCGGCGGCGGCGG 660
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CGGGGAGATCGTGGCGGTGCAGGGCGGGCACATTGTGCGGTCGACAGGGCGGAAGGACCG 720
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 GCACAGCAAGGTCTGCACGGCGCGCGGGCCGCGCGACCGCCGCGTGCGGCTGTCGGCGCA 780
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CACCGCCATCCAGTTCTACGACGTGCAGGACCGGCTGGGCTACGACCGCCCGAGCAAGGC 840
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 GGTGGACTGGCTCATCAAGAACGCCAAGGACGCCATCGACAAGCTCGACGTGCTGCCGGC 900
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 GTGGCAGCCCACTGCCGGCGGCGCAGGCGCGGGCAATGCCGCCGCGCCGCCGTCCTCCTC 960
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 GACCCACCCCGACTCCGCCGAGAACTCCGACGACCAGGCGCAGGCCATCACCGTCGCGCA 1020
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CACCGCCTTCGACTTCGCCGGCGGGGGCAGCGGCGGGACCAGCTTCCTCCCGCCGTCGCT 1080
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CGACTCGGACGCCATAGCCGACACGATCAAGTCCTTCTTCCCCATGGGTGGCACCGCAGG 1140
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CGGGGAGGCATCGTCGTCCACCACGGCGGCGCAGTCGTCGGCCATGGGTTTCCAGAGCTA 1200
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CACGCCTGACCTCCTGTCCCGCACCGGCAGCCAGAGCCAGGAGCTCCGGCTGTCGCTGCA 1260
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 GTCCTTACCAGACCCCATGTTCCACCACCAGCAACATCGCCATGGCGGCGGCGGCGGCGG 1320
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CGGCAATGGCACCACGCAGCAGGCGCTCTTCTCCGGCGCCGCCAATTACTCGTTCGGCGG 1380
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CGGAGCCATGTGGGCCACCGAGCAGCAGGCGCAGAACCAGCGCATGCTGCCGTGGAACGT 1440
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 GCCCGACCCCGGCGGCGGCGGCGGCGCCGCCTACCTGTTCAACGTGTCGCAGCAAGCGGC 1500
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 GCATATGCAGGCGGCGGCTGCGGCGCTGGGTGGCCACCAGAGCCAGTTCTTCTTCCAGAG 1560
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 GGGACCCCTTCAGTCCAGTAACCAGCCCTCCGAGCGAGGATGGCCGGAGACCGTCGAAGC 1620
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CGACAACCAGATGAGCCACCACCAAGGAGGGCTGAGCCCCTCCGTGTCGGCGGCCATCGG 1680
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 TTTTGCCGCTCCCGGCATCGGCTTCTCCGGCTTCCGCCTCCCCGCGAGGATACAGGGCGA 1740
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CGAGGAGCACAACGGCGGCGGCGGCGGCAATGGCGACAAGCCGCCGCCGCCGTCGTCTGT 1800
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CTCCTCGGCTTCTCACCACTGACCGCAGCAGTGGCGAGCAGATGACTTCACCACCACCAA 1860
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 TCCACCATGAGCAAACACCACACCATGTACCAGACTATCAGCTAGCTCCTCCACTTCCAT 1920
consensus_4877#1 ------------------------------------------------------------
consensus_4877#0 CACGGAATTGTCGATTGCATTCGGGAGGAGCAAAGTTTGGAGGTA-GCACAAGTGCACTA 1979
consensus_4877#1 --------------------------GGNGCAAAGTTTGGAGGTAAGCACAAGTGCACTA 34
** **************** **************
consensus_4877#0 CTACTGATGCTACTACATATCGGTTGGTTGGTTGGTTGGTTTTCCATCGATCTCTTCTGC 2039
consensus_4877#1 CTACTGATGCTACTACATANCGGTTGGTTGGTTGGTTGGTTTTCCATCGATCTCTTCTGC 94
******************* ****************************************
consensus_4877#0 TGCTGCGCATGTCATTGGTTTTTGTTTCAAGAATTCACTCGGAGCTTCTTAGAATTAGGC 2099
consensus_4877#1 T-CTGCGCATGTCATTGGTTTTTGTTTCAAGAATTCACTCGGAGCTTCTTAGAATTAGGC 153
* **********************************************************
consensus_4877#0 TTGTGAGAATGCAGCAACACGATGGCAAGCTTTAGCTTAGCTTAGCAAGCCTCTGTGTCT 2159
consensus_4877#1 TTGTGAGAATGCAGCAACACGATGGCAAGCTTTAGCTTAGCTTAGCAANCCTCTGTGTCT 213
************************************************ ***********
consensus_4877#0 GTTGGCTGTTGCGTTGCGCTAGGTGTAGTTGATCGATGTAGGTTCGAGCTTGCTTTGCTT 2219
consensus_4877#1 GTTGGCTGTTGCGTTGCGCTAGGTGTAGTTGATCGATGTAGGTTCGAGCTTGCTTTGCTT 273
************************************************************
consensus_4877#0 TGTTTTGATTTTTACTCTTTTGTTGCTGATGCATGGACATGCTTTTGCTTCCTCCTGTGG 2279
consensus_4877#1 TGTTTTGATTTTTACTCTTTTGTTGCTGATGCATGGACATGCTTTTGCTTCCTCCTGTGG 333
************************************************************
consensus_4877#0 GTTCAGGAGCAGTTGCTACTAGACCGATGTTGTTCTCAAAACTGATAAGTGGGATGGTGA 2339
consensus_4877#1 GTTCAGGAGCAGTTGCTACTAGACCGATGTTGTTCTCAAAACTGATAAGTGGGATGGTGA 393
************************************************************
consensus_4877#0 TGGATTGGGAGAGGAGCCTATCTTTCATCTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAA 2399
consensus_4877#1 TGGATTGGGNGAAAAAAAAAAA-------------------------------------- 415
********* ** * *
consensus_4877#0 AAAA 2403
consensus_4877#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||