These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4882#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 509 fasta sequence [CCGGAGTGCGCCATCTGCCTCGCCGAGTTCGCGCGCGGCGACGAGGTCCGCGTGCTCCCGCCGTGCGGCCACGGCTTCCACGCCGCCTGCGTCGACGTCTGGCTCGTGTCCACCTCCACCTGCCCCTCCTGCCGCCGCGCCATCGTCGTCCTCGCGGCGCCGTCGCCTGCAGTCACCGCCGCCGCCACCGACCCCCCGCCGCCGTGCTGCGCCGCCGACGCGGCACAGGCGTCGTCACAGCCACCGCAACCCACCGGCGCCAGCGACCGCGGCGGCTGCCGGACATCGGTGCCGTAGAGCTCCAGCTCTCTCTCGCTCGCGTACGTGCATCATTCGATTGT-ACATACACACACACCTAGCAAAAACGTGAATAGTAGATACGTGTTCCGAGAGA-TTTTTTCTTGTACTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGTACACATCTCTGTTAATTAACCATCATTTTCCCTTCTTTTTCGAACGATA] [+] EMBL AK108361 [CCGGAGTGCGCCATCTGCCTCGCCGAGTTCGCGCGCGGCGACGAGGTCCGCGTGCTCCCGCCGTGCGGCCACGGCTTCCACGCCGCCTGCGTCGACGTCTGGCTCGTGTCCACCTCCACCTGCCCCTCCTGCCGCCGCGCCATCGTCGTCCTCGCGGCGCCGTCGCCTGCAGTCACCGCCGCCGCCACCGACCCCCCGCCGCCGTGCTGCGCCGCCGACGCGGCACAGGCGTCGTCACAGCCACCGCAACCCACCGGCGCCAGCGACCGCGGCGGCTGCCGGACATCGGTGCCGTAGAGCTCCAGCTCTCTCTCGCTCGCGTACGTGCATCATTCGATTGT ACATACACACACACCTAGCAAAAACGTGAATAGTAGATACGTGTTCCGAGAGA TTTTTTCTTGTACTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGTACACATCTCTGTTAATTAACCATCATTTTCCCTTCTTTTTCGAACGATA] [+] EMBL BI809554 [ AGGCGTCGTCACAGCCACCGCAACCCACCGGCGCCAGCGACCGCGGCGGCT CCGGACATCGGTGCCGTAGAGCTCCAGCTCTCTCTCGCTCGCGTACGTGCATCATTCGATTGTGACATACACACACACCTAGCAAAAACGTGAATAGTAGATACGTGTTCCGAGAGATTTTTTTCTTGTACTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGT ] consensusID : consensus_4882#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence [GCGTGCGTCACAGCCACCAGCAACCCATCCGGCTGCCATGCTGNCCCGTGCGGTCTGCCGGACATCGGTTCCGTATGAGCTCCAGGCTCTCTGTCGCTCTGCGTACGTGCATCAGTGTCGATTGTACATACACACACACCTAGCCAAAACGTGAATAGTAGATACGTGTTGCCGAGAGATTTTNTTCTTGTACTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGTACACATCTCTGNTAATTAACCATCATTTTCCCTTCTTTTTCGAACGATAATTAACCGTCATTTTCTTCTTCCTTAAAAA] [+] EMBL BM418563 [GCGTGCGTCACAGCCACCAGCAACCCATCCGGCTGCCATGCTGNCCCGTGCGGTCTGCCGGACATCGGTTCCGTATGAGCTCCAGGCTCTCTGTCGCTCTGCGTACGTGCATCAGTGTCGATTGTACATACACACACACCTAGCCAAAACGTGAATAGTAGATACGTGTTGCCGAGAGATTTTNTTCTTGTACTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGTACACATCTCTGNTAATTAACCATCATTTTCCCTTCTTTTTCGAACGATAATTAACCGTCATTTTCTTCTTCCTTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4882#0 CCGGAGTGCGCCATCTGCCTCGCCGAGTTCGCGCGCGGCGACGAGGTCCGCGTGCTCCCG 60 consensus_4882#1 ------------------------------------------------------------ consensus_4882#0 CCGTGCGGCCACGGCTTCCACGCCGCCTGCGTCGACGTCTGGCTCGTGTCCACCTCCACC 120 consensus_4882#1 ------------------------------------------------------------ consensus_4882#0 TGCCCCTCCTGCCGCCGCGCCATCGTCGTCCTCGCGGCGCCGTCGCCTGCAGTCACCGCC 180 consensus_4882#1 ------------------------------------------------------------ consensus_4882#0 GCCGCCACCGACCCCCCGCCGCCGTGCTGCGCCGCCGACGCGGCACAGGCGT-CGTCACA 239 consensus_4882#1 ------------------------------------------------GCGTGCGTCACA 12 **** ******* consensus_4882#0 GCCACC-GCAACCCA-CCGGC-GCCA-GCGACCGCG-GCGG-CTGCCGGACATCGGTGCC 293 consensus_4882#1 GCCACCAGCAACCCATCCGGCTGCCATGCTGNCCCGTGCGGTCTGCCGGACATCGGTTCC 72 ****** ******** ***** **** ** * ** **** *************** ** consensus_4882#0 GTA-GAGCTCCAG-CTCTCTCTCGCTC-GCGTACGTGCATCATT--CGATTGTACATACA 348 consensus_4882#1 GTATGAGCTCCAGGCTCTCTGTCGCTCTGCGTACGTGCATCAGTGTCGATTGTACATACA 132 *** ********* ****** ****** ************** * ************** consensus_4882#0 CACACACCTAGCAAAAACGTGAATAGTAGATACGTGTT-CCGAGAGATTTTTT-CTTGTA 406 consensus_4882#1 CACACACCTAGCCAAAACGTGAATAGTAGATACGTGTTGCCGAGAGATTTTNTTCTTGTA 192 ************ ************************* ************ * ****** consensus_4882#0 CTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGTACACAT 466 consensus_4882#1 CTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGTACACAT 252 ************************************************************ consensus_4882#0 CTCTGTTAATTAACCATCATTTTCCCTTCTTTTTCGAACGATA----------------- 509 consensus_4882#1 CTCTGNTAATTAACCATCATTTTCCCTTCTTTTTCGAACGATAATTAACCGTCATTTTCT 312 ***** ************************************* consensus_4882#0 ------------- consensus_4882#1 TCTTCCTTAAAAA 325 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||