cluster # 4884

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Oryza sativa
cluster # 4884 cluster # 4884 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4884#0 length = 731 sequences # 2

consensus_4884#1 length = 652 sequences # 1

consensusID : consensus_4884#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 731
fasta sequence

                              [CGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCACCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCGTGCTACTGTACGCGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGCGGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACGGCACCGCGGACGTCGCGTTCCGCGCGCCGCAGAGTAGCAGCGGCGGGTGGGTGGCGTGGGGCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGCGTGTTCATCGCCTCGCAGATCAACGCCACCGGCGCCGGCGCCGGCGGCGTGTCCGTCGTCACGACGGTGCTGGAGAGCTTCAGCCCCAGCCTGAGGAACGGGACCCTCAGGTTCGACGTGCCGGCGCCGCCCGCCGCCGAGTACTCGGCCGGCGCGTACACCATCTACGCGACGGTGGCGCTGCCGGGGAACTCGACGACGCAGAACATGGTGTGGCAGGCCGGGCCGGTCAGGGGAGGGGCCATAGCGATGCACCCGACGACGGGGGCGAACCTGAGGAGCACCAAGAAGCACGACTTCACGTCTTGATGCGTAGTAGGCTTAGGAATAAGCATTATTATTATCATTGCCATACCATACAGCATATGTTTCTGATGTTGTTTGCTATCGGTTTTTATACTAAATAAAAGTGCAA]

[+] EMBL AK062839             [CGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCACCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCGTGCTACTGTACGCGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGCGGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACGGCACCGCGGACGTCGCGTTCCGCGCGCCGCAGAGTAGCAGCGGCGGGTGGGTGGCGTGGGGCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGCGTGTTCATCGCCTCGCAGATCAACGCCACCGGCGCCGGCGCCGGCGGCGTGTCCGTCGTCACGACGGTGCTGGAGAGCTTCAGCCCCAGCCTGAGGAACGGGACCCTCAGGTTCGACGTGCCGGCGCCGCCCGCCGCCGAGTACTCGGCCGGCGCGTACACCATCTACGCGACGGTGGCGCTGCCGGGGAACTCGACGACGCAGAACATGGTGTGGCAGGCCGGGCCGGTCAGGGGAGGGGCCATAGCGATGCACCCGACGACGGGGGCGAACCTGAGGAGCACCAAGAAGCACGACTTCACGTCTTGATGCGTAGTAGGCTTAGGAATAAGCATTATTATTATCATTGCCATACCATACAGCATATGTTTCTGATGTTGTTTGCTATCGGTTTTTATACTAAATAAAAGTGCAA]
[+] EMBL CA754535             [            CCTACCGCGTGCTAGCTACTCGTCCACCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCGTGCTACTGTACGCGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGCGGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACGGCACCGCGGACGTCGCGTTCCGCGCGCCGCAGAGTAGCAGCGGCGGGTGGGTGGCGTGGGGCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGCGTGTTCATCGCCTCGCAGATCAACGCCACCGGCGCCGGCGCCGGCGGCGTGTCCGTCGTCACGACGGTGCTGGAGAGCTTCAGCCCCAGCCTGAGGAACGGGACCCTCAGGTTCGACGTGCCGGCGCCGCCCGCCGCCGAGTACTCGGCCGGCGCGTACACCATCTACGCGACGGTGGCGCTGCCGGGGAACTCGACGACGCAGAACATGGTGTGGCAGGCCGGGCCGGTCAGGGGAGGGGCCATAGCGATGCACCCGACGACGGGGGCGAACCTGAGGAGC CCAAGAAGCACG                                                                                                                        ]




>consensus_4884#0
CGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCACCACCATGGCGCGGCTAGGACG
CTCGGCGTGGCTCCTCGCGGCGGCCGTGCTACTGTACGCGGCGGCGGCGCAGCCGGACTG
CGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGCGGTGCGACACCCTGCCGGTGCT
CGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACGGCACCGCGGACGTCGCGTTCCG
CGCGCCGCAGAGTAGCAGCGGCGGGTGGGTGGCGTGGGGCATCAACACCCAGGGCGCCGG
CATGGTCGGCAGCAGCGTGTTCATCGCCTCGCAGATCAACGCCACCGGCGCCGGCGCCGG
CGGCGTGTCCGTCGTCACGACGGTGCTGGAGAGCTTCAGCCCCAGCCTGAGGAACGGGAC
CCTCAGGTTCGACGTGCCGGCGCCGCCCGCCGCCGAGTACTCGGCCGGCGCGTACACCAT
CTACGCGACGGTGGCGCTGCCGGGGAACTCGACGACGCAGAACATGGTGTGGCAGGCCGG
GCCGGTCAGGGGAGGGGCCATAGCGATGCACCCGACGACGGGGGCGAACCTGAGGAGCAC
CAAGAAGCACGACTTCACGTCTTGATGCGTAGTAGGCTTAGGAATAAGCATTATTATTAT
CATTGCCATACCATACAGCATATGTTTCTGATGTTGTTTGCTATCGGTTTTTATACTAAA
TAAAAGTGCAA

consensusID : consensus_4884#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 652
fasta sequence

                              [GAAGCTCGANGTTTGGGTTGCGCCACGGNGGCGGCCGCTCTAGATTTAGNGGTATTCTCATTTCTGCAGGAATTCGGCACGAGGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCACCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCTTGCTACTGTACGCGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGCGGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACGGCACCGCGGACGTCGCGTTCCGCGCGCCGCAAAGCAGCGGCGGCGGGTGGGTGGCGTGGGGCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGCCGTGTTCATCGCCTTGCAGATCAACGCCACCGGCGCCGGCGCCGGCGGGGTGTCCCGACGTACGACCGTGCTGGAGAAGCTTAATCACCACTCTGAGGAACCGGGACCCTCAAGTTTTAACGTGTCCGTAACCGCTCCGACGACCCAGAACTACGGGTCTGTGACGTAACACAAACATACGCGCACAGTGGCACCTCCCGGTGGATCTCATCCACTCCACAACATGTGATGGCCAGTCCCGGCACTTCCGCGCA]

[+] EMBL BE040744             [GAAGCTCGANGTTTGGGTTGCGCCACGGNGGCGGCCGCTCTAGATTTAGNGGTATTCTCATTTCTGCAGGAATTCGGCACGAGGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCACCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCTTGCTACTGTACGCGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGCGGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACGGCACCGCGGACGTCGCGTTCCGCGCGCCGCAAAGCAGCGGCGGCGGGTGGGTGGCGTGGGGCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGCCGTGTTCATCGCCTTGCAGATCAACGCCACCGGCGCCGGCGCCGGCGGGGTGTCCCGACGTACGACCGTGCTGGAGAAGCTTAATCACCACTCTGAGGAACCGGGACCCTCAAGTTTTAACGTGTCCGTAACCGCTCCGACGACCCAGAACTACGGGTCTGTGACGTAACACAAACATACGCGCACAGTGGCACCTCCCGGTGGATCTCATCCACTCCACAACATGTGATGGCCAGTCCCGGCACTTCCGCGCA]




>consensus_4884#1
GAAGCTCGANGTTTGGGTTGCGCCACGGNGGCGGCCGCTCTAGATTTAGNGGTATTCTCA
TTTCTGCAGGAATTCGGCACGAGGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCA
CCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCTTGCTACTGTACG
CGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGC
GGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACG
GCACCGCGGACGTCGCGTTCCGCGCGCCGCAAAGCAGCGGCGGCGGGTGGGTGGCGTGGG
GCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGCCGTGTTCATCGCCTTGCAGATC
AACGCCACCGGCGCCGGCGCCGGCGGGGTGTCCCGACGTACGACCGTGCTGGAGAAGCTT
AATCACCACTCTGAGGAACCGGGACCCTCAAGTTTTAACGTGTCCGTAACCGCTCCGACG
ACCCAGAACTACGGGTCTGTGACGTAACACAAACATACGCGCACAGTGGCACCTCCCGGT
GGATCTCATCCACTCCACAACATGTGATGGCCAGTCCCGGCACTTCCGCGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4884#0      ------------------------------------------------------------
consensus_4884#1      GAAGCTCGANGTTTGGGTTGCGCCACGGNGGCGGCCGCTCTAGATTTAGNGGTATTCTCA 60
                                                                                  

consensus_4884#0      ----------------------CGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCA 38
consensus_4884#1      TTTCTGCAGGAATTCGGCACGAGGCCTTCGCCTCCCTACCGCGTGCTAGCTACTCGTCCA 120
                                             *************************************

consensus_4884#0      CCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCGTGCTACTGTACG 98
consensus_4884#1      CCACCATGGCGCGGCTAGGACGCTCGGCGTGGCTCCTCGCGGCGGCCTTGCTACTGTACG 180
                      *********************************************** ************

consensus_4884#0      CGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGC 158
consensus_4884#1      CGGCGGCGGCGCAGCCGGACTGCGCGAACGCGACGTTCCAGGCGGGCCGGACGTACCGGC 240
                      ************************************************************

consensus_4884#0      GGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACG 218
consensus_4884#1      GGTGCGACACCCTGCCGGTGCTCGGCGCCAGCCTGCACTGGACGTACCACCCGGCGAACG 300
                      ************************************************************

consensus_4884#0      GCACCGCGGACGTCGCGTTCCGCGCGCCGCAGAGTAGCAGCGGCGGGTGGGTGGCGTGGG 278
consensus_4884#1      GCACCGCGGACGTCGCGTTCCGCGCGCCGCAAAGCAGCGGCGGCGGGTGGGTGGCGTGGG 360
                      ******************************* ** *** *********************

consensus_4884#0      GCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGC-GTGTTCATCGCCTCGCAGATC 337
consensus_4884#1      GCATCAACACCCAGGGCGCCGGCATGGTCGGCAGCAGCCGTGTTCATCGCCTTGCAGATC 420
                      ************************************** ************* *******

consensus_4884#0      AACGCCACCGGCGCCGGCGCCGGCGGCGTGTCCGTCGTCACGACGGTGCTGGAGA-GCTT 396
consensus_4884#1      AACGCCACCGGCGCCGGCGCCGGCGGGGTGTCCCGACGTACGACCGTGCTGGAGAAGCTT 480
                      ************************** ******      ***** ********** ****

consensus_4884#0      CAGCCCCAGCCTGAGGAAC-GGGACCCTCAGGTTC-GACGTGCCGGCG-CCGCCC--GCC 451
consensus_4884#1      AATCACCACTCTGAGGAACCGGGACCCTCAAGTTTTAACGTGTCCGTAACCGCTCCGACG 540
                       * * ***  ********* ********** ***   ***** * *   **** *   * 

consensus_4884#0      GCCGAGTACTC--GGCCGGCG-CGTA-CACCATC-TACGCG-ACGGTGGCGCTGCCGGG- 504
consensus_4884#1      ACCCAGAACTACGGGTCTGTGACGTAACACAAACATACGCGCACAGTGGCACCTCCCGGT 600
                       ** ** ***   ** * * * **** *** * * ****** ** ***** *  ** ** 

consensus_4884#0      -GAACTCGACGACGC-AGAACATGGTGTGGC-AGGCCGGGCCGGTCAGGGGAGGGGCCAT 561
consensus_4884#1      GGATCTCATCCACTCCACAACATGTGATGGCCAGTCCCGGCACTTCCGCGCA-------- 652
                       ** ***  * ** * * ******   **** ** ** ***   ** * * *        

consensus_4884#0      AGCGATGCACCCGACGACGGGGGCGAACCTGAGGAGCACCAAGAAGCACGACTTCACGTC 621
consensus_4884#1      ------------------------------------------------------------
                                                                                  

consensus_4884#0      TTGATGCGTAGTAGGCTTAGGAATAAGCATTATTATTATCATTGCCATACCATACAGCAT 681
consensus_4884#1      ------------------------------------------------------------
                                                                                  

consensus_4884#0      ATGTTTCTGATGTTGTTTGCTATCGGTTTTTATACTAAATAAAAGTGCAA 731
consensus_4884#1      --------------------------------------------------