These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [TATCCGGCGCGCGAAGAGGAGGCTCGCCGCCTCGCCGCTGCAGCTCCGTGCGGTCGTCGTCGGCGGCGGCGCTCTTTCGGTCCTCGCCGGCGGGTCTCGGGAACCGAGTGCTCAAATGGGTCATGGCCCAAGGAGGCTGGTCTCTGGTGCATATGCCATGCCACCCTGGGTGCCTATTGAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGGGGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTGTCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATGCAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAATGCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATTCTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCATGCGATTCAAAATTATTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK106435 [TATCCGGCGCGCGAAGAGGAGGCTCGCCGCCTCGCCGCTGCAGCTCCGTGCGGTCGTCGTCGGCGGCGGCGCTCTTTCGGTCCTCGCCGGCGGGTCTCGGGAACCGAGTGCTCAAATGGGTCATGGCCCAAGGAGGCTGGTCTCTGGTGCATATGCCATGCCACCCTGGGTGCCTATTGAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGGGGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTGTCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATGCAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAATGCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATTCTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCATGCGATTCAAAATTATTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_4887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 570 fasta sequence [AGAGGACGAGACAAGGGGGAACATGATATGGCAGATTTGTACAATTATTTTGTAAGTGTAATTGTATCAAATGATTTGATGCAAAATAACTTGTGTGTAGGGAACCGAGTGCTCAAATGGGTCATGGCCCAAGGAGGCTGGTCTTTGGTGCATATGCCATGCCACCCTGGGTGCCTATTGAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGGGGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTATCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATGCAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAATGCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATTTTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCATGCGATTCAAAATTAAAAAAAAAAAAAAAAA] [-] EMBL CA761004 [AGAGGACGAGACAAGGGGGAACATGATATGGCAGATTTGTACAATTATTTTGTAAGTGTAATTGTATCAAATGATTTGATGCAAAATAACTTGTGTGTAGGGAACCGAGTGCTCAAATGGGTCATGGCCCAAGGAGGCTGGTCTTTGGTGCATATGCCATGCCACCCTGGGTGCCTATTGAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGGGGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTATCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATGCAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAATGCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATTTTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCATGCGATTCAAAATTAAAAAAAAAAAAAAAAA] [+] EMBL CA766948 [ TATGGCAGATTTGTACAATTATTTTGTAAGTGTAATTGTATCAAATGATTTGATGCAAAATAACTTGTGTGTAGGGAACCGAGTGCTCAAATGGGTCATGGCCCAAGGAGGCTGGTCTCTGGTGCATATGCCATGCCACCCTGGGTGCCTATTGAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGGGGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTATCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATGCAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAATGCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATTCTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCATGCGATTCAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4887#0 TATCCGGCGCGCGAAGAGGAGGCTCGCCGCCTCGCCGCTGCAGCTCCGTGCGGTCGTCGT 60 consensus_4887#1 -AGAGGACGAGACAAGGGGGAACATGATATGGCAGATTTGTACAATTATTTTGTAAGTGT 59 * * ** * *** ** * * * ** * * ** ** consensus_4887#0 CGGCGGCGGCGCTCTTTCGGTCCTCGCCGGC--GGGTCTCGGGAACCGAGTGCTCAAATG 118 consensus_4887#1 AATTGTATCAAATGATTTGATGCAAAATAACTTGTGTGTAGGGAACCGAGTGCTCAAATG 119 * * ** * * * * * ** * ******************** consensus_4887#0 GGTCATGGCCCAAGGAGGCTGGTCTCTGGTGCATATGCCATGCCACCCTGGGTGCCTATT 178 consensus_4887#1 GGTCATGGCCCAAGGAGGCTGGTCTTTGGTGCATATGCCATGCCACCCTGGGTGCCTATT 179 ************************* ********************************** consensus_4887#0 GAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGG 238 consensus_4887#1 GAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGG 239 ************************************************************ consensus_4887#0 GGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTG 298 consensus_4887#1 GGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTA 299 *********************************************************** consensus_4887#0 TCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATG 358 consensus_4887#1 TCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATG 359 ************************************************************ consensus_4887#0 CAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAAT 418 consensus_4887#1 CAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAAT 419 ************************************************************ consensus_4887#0 GCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATT 478 consensus_4887#1 GCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATT 479 ************************************************************ consensus_4887#0 CTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCA 538 consensus_4887#1 TTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCA 539 *********************************************************** consensus_4887#0 TGCGATTCAAAATTATTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 593 consensus_4887#1 TGCGATTCAAAATTA------AAAAAAAAAAAAAAAA------------------ 570 *************** **************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||