cluster # 489

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Oryza sativa
cluster # 489 cluster # 489 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_489#0 length = 721 sequences # 1

consensus_489#1 length = 692 sequences # 1

consensusID : consensus_489#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 721
fasta sequence

                              [TTTTTTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGCCATTTGCTGGAACTATATTACAGAAGCCCAACGAGATGCAGTTTTNGTTTCAACCAAGGCGGTTCTTTTTCATGAATTTGCGTAGAATCTGGCTTACTAAAGAGAGTATTGGGGCATTTAAAACCCAGGGGGAGGGCAAAATCCCCCCCCCAAAAAAAAAAAAAAACCTTGATTCCTTGGGCCTTTCTAAAAAAATTTGGCGGAATTGGAAAAGCGGAAAAAAAGGGCGCAAAAAGTGGGGAAAGGCCGCGCTTATACAACCCCCCAATTGGAGGGTTCCCGACGAAAAGCCCCGCGAAATGGGCGGGGGGGAAACTCCCGCCGGGGGGAAGAGCCACAACCTTGGTGGAGCTTGTCTTCCTCCCGCGCTAGGGGTGTCGCGAGGGCGCAACCAGCTGCGCAACAGGACGGCGTGTGGCGGTGGGGAGCTCCGCACCGCCGTCGGCGGCAGGGTGTATATTCGTTGTTCTGTAGCAAAGATCGACGTACTGGGGTGGTGTGGCCGCCTGACAACCGATGGTCGCAGAGGTGGGAAGAGTAGACGCGCCGGGCGTCCCGCGCGGCGCGTTCGCACCACCTCAGGAGGACCGGTGCCGTCACTAGCTCGCCGCATTGACAAGGTCGCCGCACGACCAGAGTAATACTCGGCCTTTCCATCTAT]

[+] EMBL CA759718             [TTTTTTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGCCATTTGCTGGAACTATATTACAGAAGCCCAACGAGATGCAGTTTTNGTTTCAACCAAGGCGGTTCTTTTTCATGAATTTGCGTAGAATCTGGCTTACTAAAGAGAGTATTGGGGCATTTAAAACCCAGGGGGAGGGCAAAATCCCCCCCCCAAAAAAAAAAAAAAACCTTGATTCCTTGGGCCTTTCTAAAAAAATTTGGCGGAATTGGAAAAGCGGAAAAAAAGGGCGCAAAAAGTGGGGAAAGGCCGCGCTTATACAACCCCCCAATTGGAGGGTTCCCGACGAAAAGCCCCGCGAAATGGGCGGGGGGGAAACTCCCGCCGGGGGGAAGAGCCACAACCTTGGTGGAGCTTGTCTTCCTCCCGCGCTAGGGGTGTCGCGAGGGCGCAACCAGCTGCGCAACAGGACGGCGTGTGGCGGTGGGGAGCTCCGCACCGCCGTCGGCGGCAGGGTGTATATTCGTTGTTCTGTAGCAAAGATCGACGTACTGGGGTGGTGTGGCCGCCTGACAACCGATGGTCGCAGAGGTGGGAAGAGTAGACGCGCCGGGCGTCCCGCGCGGCGCGTTCGCACCACCTCAGGAGGACCGGTGCCGTCACTAGCTCGCCGCATTGACAAGGTCGCCGCACGACCAGAGTAATACTCGGCCTTTCCATCTAT]




>consensus_489#0
TTTTTTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGC
CATTTGCTGGAACTATATTACAGAAGCCCAACGAGATGCAGTTTTNGTTTCAACCAAGGC
GGTTCTTTTTCATGAATTTGCGTAGAATCTGGCTTACTAAAGAGAGTATTGGGGCATTTA
AAACCCAGGGGGAGGGCAAAATCCCCCCCCCAAAAAAAAAAAAAAACCTTGATTCCTTGG
GCCTTTCTAAAAAAATTTGGCGGAATTGGAAAAGCGGAAAAAAAGGGCGCAAAAAGTGGG
GAAAGGCCGCGCTTATACAACCCCCCAATTGGAGGGTTCCCGACGAAAAGCCCCGCGAAA
TGGGCGGGGGGGAAACTCCCGCCGGGGGGAAGAGCCACAACCTTGGTGGAGCTTGTCTTC
CTCCCGCGCTAGGGGTGTCGCGAGGGCGCAACCAGCTGCGCAACAGGACGGCGTGTGGCG
GTGGGGAGCTCCGCACCGCCGTCGGCGGCAGGGTGTATATTCGTTGTTCTGTAGCAAAGA
TCGACGTACTGGGGTGGTGTGGCCGCCTGACAACCGATGGTCGCAGAGGTGGGAAGAGTA
GACGCGCCGGGCGTCCCGCGCGGCGCGTTCGCACCACCTCAGGAGGACCGGTGCCGTCAC
TAGCTCGCCGCATTGACAAGGTCGCCGCACGACCAGAGTAATACTCGGCCTTTCCATCTA
T

consensusID : consensus_489#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [TTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGCCATTTGCTGGAACTATATTACAGAAGCACAACGAGCATGCAGTTTCTGCTTCAACAAGGCGGTTCTAAACATGAATTTTCCTAGAATCTGGCTTACTAAAGAGAGTATTGTGTCATTAAAAGCCAAGGGGAGGCAAAATCAATTTACAAAAAAAAAGGACCCTGATTCATGTGCATTTGTAAAGATTTGGTGATTGAACAGGTAGAGAAGGGCAGAAATGTGGAAGGCGCGTTACAAAACCAATTGAGGTTGCCATGTAAACCTCGAATTGCTGTGTCACTACTTGGGGTAAGACCTACACTGGAACTCTTTTTCCTCGATAGCTTCCAAGGTACGATGCAACAAATGGCTGCTGAAATATCCAACCAATGAAAGGAATCTTTTGCAAGAAAACCACAAGAGTTGGCCAGAAACCACTGAAAAGTATAATAAAACCATATGCCTCTAATAGCATGCCAAAAAAGGGCCATCCAATTAGAACAAGCAAAAGGCCAGCACCCCATGAGACAGCACCCTCATAGCTCTTGGGCTTAGGGAAGAATTGCCCGAGCCATTTCAATCCAATAAGTCCAACCTAAGCCTGACGGGAAGAGGATATTGGCCATTGGCAAGTACCCCCTTGTGTTCGCCCATCAG]

[+] EMBL CA762272             [TTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGCCATTTGCTGGAACTATATTACAGAAGCACAACGAGCATGCAGTTTCTGCTTCAACAAGGCGGTTCTAAACATGAATTTTCCTAGAATCTGGCTTACTAAAGAGAGTATTGTGTCATTAAAAGCCAAGGGGAGGCAAAATCAATTTACAAAAAAAAAGGACCCTGATTCATGTGCATTTGTAAAGATTTGGTGATTGAACAGGTAGAGAAGGGCAGAAATGTGGAAGGCGCGTTACAAAACCAATTGAGGTTGCCATGTAAACCTCGAATTGCTGTGTCACTACTTGGGGTAAGACCTACACTGGAACTCTTTTTCCTCGATAGCTTCCAAGGTACGATGCAACAAATGGCTGCTGAAATATCCAACCAATGAAAGGAATCTTTTGCAAGAAAACCACAAGAGTTGGCCAGAAACCACTGAAAAGTATAATAAAACCATATGCCTCTAATAGCATGCCAAAAAAGGGCCATCCAATTAGAACAAGCAAAAGGCCAGCACCCCATGAGACAGCACCCTCATAGCTCTTGGGCTTAGGGAAGAATTGCCCGAGCCATTTCAATCCAATAAGTCCAACCTAAGCCTGACGGGAAGAGGATATTGGCCATTGGCAAGTACCCCCTTGTGTTCGCCCATCAG]




>consensus_489#1
TTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGCCATT
TGCTGGAACTATATTACAGAAGCACAACGAGCATGCAGTTTCTGCTTCAACAAGGCGGTT
CTAAACATGAATTTTCCTAGAATCTGGCTTACTAAAGAGAGTATTGTGTCATTAAAAGCC
AAGGGGAGGCAAAATCAATTTACAAAAAAAAAGGACCCTGATTCATGTGCATTTGTAAAG
ATTTGGTGATTGAACAGGTAGAGAAGGGCAGAAATGTGGAAGGCGCGTTACAAAACCAAT
TGAGGTTGCCATGTAAACCTCGAATTGCTGTGTCACTACTTGGGGTAAGACCTACACTGG
AACTCTTTTTCCTCGATAGCTTCCAAGGTACGATGCAACAAATGGCTGCTGAAATATCCA
ACCAATGAAAGGAATCTTTTGCAAGAAAACCACAAGAGTTGGCCAGAAACCACTGAAAAG
TATAATAAAACCATATGCCTCTAATAGCATGCCAAAAAAGGGCCATCCAATTAGAACAAG
CAAAAGGCCAGCACCCCATGAGACAGCACCCTCATAGCTCTTGGGCTTAGGGAAGAATTG
CCCGAGCCATTTCAATCCAATAAGTCCAACCTAAGCCTGACGGGAAGAGGATATTGGCCA
TTGGCAAGTACCCCCTTGTGTTCGCCCATCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_489#0      TTTTTTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGC 60
consensus_489#1      ----TTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGC 56
                         ********************************************************

consensus_489#0      CATTTGCTGGAACTATATTACAGAAGCCCAACGAG-ATGCAGTTTTNGTTTCAACCAAGG 119
consensus_489#1      CATTTGCTGGAACTATATTACAGAAGCACAACGAGCATGCAGTTTCTGCTTCAAC-AAGG 115
                     *************************** ******* *********  * ****** ****

consensus_489#0      CGGTTCTTTTTCATGAATTTGCGTAGAATCTGGCTTACTAAAGAGAGTATTGGGGCATTT 179
consensus_489#1      CGGTTCTAAA-CATGAATTTTCCTAGAATCTGGCTTACTAAAGAGAGTATTGTGTCATTA 174
                     *******    ********* * ***************************** * **** 

consensus_489#0      AAAACCCAGGGGGAGGGCAAAATCCCCCCCCCAAAAAAAAAAAAAAACCTTGATTCCTTG 239
consensus_489#1      AAAGCCAAGGGG--AGGCAAAATCAATTT----ACAAAAAAAAAGGACCCTGATTCAT-G 227
                     *** ** *****   *********         * *********  *** ****** * *

consensus_489#0      GGCCTTTCTAAAAAAATT-TGGCGGAATTGGAAAAGCGGAAAAAAAGGGCGCAAAAAGTG 298
consensus_489#1      TGCATTTGTAAAGATTTGGTGATTGAACAGGTAGAGAAGGGCAGAAATGTGGAAGGCGCG 287
                      ** *** **** *  *  **   ***  ** * **  *   * **  * * **   * *

consensus_489#0      GGGAAAGGCCGCGCTTATACAACCCCCCAATTGGAGGGTTCCCGACGAAAAGCCCCGCGA 358
consensus_489#1      TTACAAAACCA-ATTGAGGTTGCCATGTAAACCTCGAATTGCTG-TGTCACTACTTGGGG 345
                         **  **    * *     **    **     *  ** * *  *  *   *  * * 

consensus_489#0      AATGGGCGGGGGGGAAACTCCCGCCGGGGGGAAGAGCCACAACCTTGGTGGAGCTTGTCT 418
consensus_489#1      TAAGACCTACACTGGAACTCTTTTTCCTCGATAGCTTCCAAGGTACGATGCAACAAATGG 405
                      * *  *      * *****         *  **   *  *     * ** * *   *  

consensus_489#0      TCCTCCCGCGCTAGGGGTGTCGCGAGGGCGCAACCAGCTGCGCAACAGGACGGCGTGTGG 478
consensus_489#1      --CTGCTGAAATATCCAACCAATGAAAGG--AATC--TTTTGCAAGAAAACCACAAGAGT 459
                       ** * *   **          **  *   ** *   *  **** *  **  *  * * 

consensus_489#0      CGGTGGGGAGCTCCGCACCGCCGTCGGCGGCAGGGTGTATATTCGTTGTTCTGT-AGCAA 537
consensus_489#1      TGGCCAGAAACCACTGAAAAGTAT-AATAAAACCATATGCCTCTAATAGCATGCCAAAAA 518
                      **   * * *  *  *      *       *   * *   *    *    **  *  **

consensus_489#0      AGATCGACGTACTGGGGTGGTGTGGCCGCCTGACAACCGATGGTCGCAGAGGTGGGAAGA 597
consensus_489#1      AGGGCCATCCAATTAGAACAAGCAAAAGGCCAGCACCCCAT-------GAGACAGCACCC 571
                     **  * *   * *  *     *     * *   ** ** **       ***   * *   

consensus_489#0      GTAGACGCGCCGGGCGTCCCGCGCGGCGCGTTCGCACCACCTCAGGAGGACCGGTGCCGT 657
consensus_489#1      TCATA-GCTCTTGGGCTTAGGGAAGAATTGCCCGAGCCATTTCAATCCAATAAGT-CCAA 629
                       * * ** *  **  *   *   *    *  **  ***  ***     *   ** **  

consensus_489#0      CACTAGCTCGCCGCATTGACAAGGTCGCCGCACGACCAGAGTAATACTCGGCCTTTCCAT 717
consensus_489#1      CCTAAGCCTGACGGGAAGAGGATATTGGCCATTGGCAAGTACCCCCTTGTGTTCGCCCAT 689
                     *   ***  * **    **  *  * * *    * * **        *  *     ****

consensus_489#0      CTAT 721
consensus_489#1      CAG- 692
                     *