These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [TTTTTTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGCCATTTGCTGGAACTATATTACAGAAGCCCAACGAGATGCAGTTTTNGTTTCAACCAAGGCGGTTCTTTTTCATGAATTTGCGTAGAATCTGGCTTACTAAAGAGAGTATTGGGGCATTTAAAACCCAGGGGGAGGGCAAAATCCCCCCCCCAAAAAAAAAAAAAAACCTTGATTCCTTGGGCCTTTCTAAAAAAATTTGGCGGAATTGGAAAAGCGGAAAAAAAGGGCGCAAAAAGTGGGGAAAGGCCGCGCTTATACAACCCCCCAATTGGAGGGTTCCCGACGAAAAGCCCCGCGAAATGGGCGGGGGGGAAACTCCCGCCGGGGGGAAGAGCCACAACCTTGGTGGAGCTTGTCTTCCTCCCGCGCTAGGGGTGTCGCGAGGGCGCAACCAGCTGCGCAACAGGACGGCGTGTGGCGGTGGGGAGCTCCGCACCGCCGTCGGCGGCAGGGTGTATATTCGTTGTTCTGTAGCAAAGATCGACGTACTGGGGTGGTGTGGCCGCCTGACAACCGATGGTCGCAGAGGTGGGAAGAGTAGACGCGCCGGGCGTCCCGCGCGGCGCGTTCGCACCACCTCAGGAGGACCGGTGCCGTCACTAGCTCGCCGCATTGACAAGGTCGCCGCACGACCAGAGTAATACTCGGCCTTTCCATCTAT] [+] EMBL CA759718 [TTTTTTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGCCATTTGCTGGAACTATATTACAGAAGCCCAACGAGATGCAGTTTTNGTTTCAACCAAGGCGGTTCTTTTTCATGAATTTGCGTAGAATCTGGCTTACTAAAGAGAGTATTGGGGCATTTAAAACCCAGGGGGAGGGCAAAATCCCCCCCCCAAAAAAAAAAAAAAACCTTGATTCCTTGGGCCTTTCTAAAAAAATTTGGCGGAATTGGAAAAGCGGAAAAAAAGGGCGCAAAAAGTGGGGAAAGGCCGCGCTTATACAACCCCCCAATTGGAGGGTTCCCGACGAAAAGCCCCGCGAAATGGGCGGGGGGGAAACTCCCGCCGGGGGGAAGAGCCACAACCTTGGTGGAGCTTGTCTTCCTCCCGCGCTAGGGGTGTCGCGAGGGCGCAACCAGCTGCGCAACAGGACGGCGTGTGGCGGTGGGGAGCTCCGCACCGCCGTCGGCGGCAGGGTGTATATTCGTTGTTCTGTAGCAAAGATCGACGTACTGGGGTGGTGTGGCCGCCTGACAACCGATGGTCGCAGAGGTGGGAAGAGTAGACGCGCCGGGCGTCCCGCGCGGCGCGTTCGCACCACCTCAGGAGGACCGGTGCCGTCACTAGCTCGCCGCATTGACAAGGTCGCCGCACGACCAGAGTAATACTCGGCCTTTCCATCTAT] consensusID : consensus_489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [TTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGCCATTTGCTGGAACTATATTACAGAAGCACAACGAGCATGCAGTTTCTGCTTCAACAAGGCGGTTCTAAACATGAATTTTCCTAGAATCTGGCTTACTAAAGAGAGTATTGTGTCATTAAAAGCCAAGGGGAGGCAAAATCAATTTACAAAAAAAAAGGACCCTGATTCATGTGCATTTGTAAAGATTTGGTGATTGAACAGGTAGAGAAGGGCAGAAATGTGGAAGGCGCGTTACAAAACCAATTGAGGTTGCCATGTAAACCTCGAATTGCTGTGTCACTACTTGGGGTAAGACCTACACTGGAACTCTTTTTCCTCGATAGCTTCCAAGGTACGATGCAACAAATGGCTGCTGAAATATCCAACCAATGAAAGGAATCTTTTGCAAGAAAACCACAAGAGTTGGCCAGAAACCACTGAAAAGTATAATAAAACCATATGCCTCTAATAGCATGCCAAAAAAGGGCCATCCAATTAGAACAAGCAAAAGGCCAGCACCCCATGAGACAGCACCCTCATAGCTCTTGGGCTTAGGGAAGAATTGCCCGAGCCATTTCAATCCAATAAGTCCAACCTAAGCCTGACGGGAAGAGGATATTGGCCATTGGCAAGTACCCCCTTGTGTTCGCCCATCAG] [+] EMBL CA762272 [TTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGCCATTTGCTGGAACTATATTACAGAAGCACAACGAGCATGCAGTTTCTGCTTCAACAAGGCGGTTCTAAACATGAATTTTCCTAGAATCTGGCTTACTAAAGAGAGTATTGTGTCATTAAAAGCCAAGGGGAGGCAAAATCAATTTACAAAAAAAAAGGACCCTGATTCATGTGCATTTGTAAAGATTTGGTGATTGAACAGGTAGAGAAGGGCAGAAATGTGGAAGGCGCGTTACAAAACCAATTGAGGTTGCCATGTAAACCTCGAATTGCTGTGTCACTACTTGGGGTAAGACCTACACTGGAACTCTTTTTCCTCGATAGCTTCCAAGGTACGATGCAACAAATGGCTGCTGAAATATCCAACCAATGAAAGGAATCTTTTGCAAGAAAACCACAAGAGTTGGCCAGAAACCACTGAAAAGTATAATAAAACCATATGCCTCTAATAGCATGCCAAAAAAGGGCCATCCAATTAGAACAAGCAAAAGGCCAGCACCCCATGAGACAGCACCCTCATAGCTCTTGGGCTTAGGGAAGAATTGCCCGAGCCATTTCAATCCAATAAGTCCAACCTAAGCCTGACGGGAAGAGGATATTGGCCATTGGCAAGTACCCCCTTGTGTTCGCCCATCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_489#0 TTTTTTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGC 60 consensus_489#1 ----TTTTTTTTTCTGGCACAAAAATGTGTGCCCATAGCAAGATTTTCTATATCAGAGGC 56 ******************************************************** consensus_489#0 CATTTGCTGGAACTATATTACAGAAGCCCAACGAG-ATGCAGTTTTNGTTTCAACCAAGG 119 consensus_489#1 CATTTGCTGGAACTATATTACAGAAGCACAACGAGCATGCAGTTTCTGCTTCAAC-AAGG 115 *************************** ******* ********* * ****** **** consensus_489#0 CGGTTCTTTTTCATGAATTTGCGTAGAATCTGGCTTACTAAAGAGAGTATTGGGGCATTT 179 consensus_489#1 CGGTTCTAAA-CATGAATTTTCCTAGAATCTGGCTTACTAAAGAGAGTATTGTGTCATTA 174 ******* ********* * ***************************** * **** consensus_489#0 AAAACCCAGGGGGAGGGCAAAATCCCCCCCCCAAAAAAAAAAAAAAACCTTGATTCCTTG 239 consensus_489#1 AAAGCCAAGGGG--AGGCAAAATCAATTT----ACAAAAAAAAAGGACCCTGATTCAT-G 227 *** ** ***** ********* * ********* *** ****** * * consensus_489#0 GGCCTTTCTAAAAAAATT-TGGCGGAATTGGAAAAGCGGAAAAAAAGGGCGCAAAAAGTG 298 consensus_489#1 TGCATTTGTAAAGATTTGGTGATTGAACAGGTAGAGAAGGGCAGAAATGTGGAAGGCGCG 287 ** *** **** * * ** *** ** * ** * * ** * * ** * * consensus_489#0 GGGAAAGGCCGCGCTTATACAACCCCCCAATTGGAGGGTTCCCGACGAAAAGCCCCGCGA 358 consensus_489#1 TTACAAAACCA-ATTGAGGTTGCCATGTAAACCTCGAATTGCTG-TGTCACTACTTGGGG 345 ** ** * * ** ** * ** * * * * * * * consensus_489#0 AATGGGCGGGGGGGAAACTCCCGCCGGGGGGAAGAGCCACAACCTTGGTGGAGCTTGTCT 418 consensus_489#1 TAAGACCTACACTGGAACTCTTTTTCCTCGATAGCTTCCAAGGTACGATGCAACAAATGG 405 * * * * ***** * ** * * * ** * * * consensus_489#0 TCCTCCCGCGCTAGGGGTGTCGCGAGGGCGCAACCAGCTGCGCAACAGGACGGCGTGTGG 478 consensus_489#1 --CTGCTGAAATATCCAACCAATGAAAGG--AATC--TTTTGCAAGAAAACCACAAGAGT 459 ** * * ** ** * ** * * **** * ** * * * consensus_489#0 CGGTGGGGAGCTCCGCACCGCCGTCGGCGGCAGGGTGTATATTCGTTGTTCTGT-AGCAA 537 consensus_489#1 TGGCCAGAAACCACTGAAAAGTAT-AATAAAACCATATGCCTCTAATAGCATGCCAAAAA 518 ** * * * * * * * * * * * ** * ** consensus_489#0 AGATCGACGTACTGGGGTGGTGTGGCCGCCTGACAACCGATGGTCGCAGAGGTGGGAAGA 597 consensus_489#1 AGGGCCATCCAATTAGAACAAGCAAAAGGCCAGCACCCCAT-------GAGACAGCACCC 571 ** * * * * * * * * ** ** ** *** * * consensus_489#0 GTAGACGCGCCGGGCGTCCCGCGCGGCGCGTTCGCACCACCTCAGGAGGACCGGTGCCGT 657 consensus_489#1 TCATA-GCTCTTGGGCTTAGGGAAGAATTGCCCGAGCCATTTCAATCCAATAAGT-CCAA 629 * * ** * ** * * * * ** *** *** * ** ** consensus_489#0 CACTAGCTCGCCGCATTGACAAGGTCGCCGCACGACCAGAGTAATACTCGGCCTTTCCAT 717 consensus_489#1 CCTAAGCCTGACGGGAAGAGGATATTGGCCATTGGCAAGTACCCCCTTGTGTTCGCCCAT 689 * *** * ** ** * * * * * * ** * * **** consensus_489#0 CTAT 721 consensus_489#1 CAG- 692 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||