cluster # 4894

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Oryza sativa
cluster # 4894 cluster # 4894 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4894#0 length = 628 sequences # 1

consensus_4894#1 length = 597 sequences # 2

consensusID : consensus_4894#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [GTCNATTCTGGAGCTCCATTCTGCGGCGGCCGCTCTAGAATAGTTTATCCCCCGGGCGGTAGGAATACAGCACGAGGCTCGACTGTGCTCGCCTTTCCCCTCTCACCATGCCACCTTGACCTTGCTCCCCGACGACCTCTACCACGCCACTGCTTGTCCTACTGAGGAAGCGGTGGCGGCGCCACGCCTCCACCAACACCCGGCGCCCGTGGGTGCACGCCGCGCCGTCACGGACGCGGGACGCCGTTCCTCGCATCGCCTCAGCGCCTCGCGGGGAGCCAGCGACGGTGGCCAACTCTCTCCGCTCTCTGGCCGGGCGGCCGGCGGGAGTCCGGCTCTCCGCGACTCCGGCTGTCCGCCACTCGGACGAGGCGGCAACTGCGCCTCTCCTCACGTGTCGCTGTGCCTCGCCGGTCGCAACCGTATCCGCTCCCACTCTGGCTGTCCTCGTCCGATAAATGTCTGGTCCAACTCCCGCTATCCGACGCGCCGATACCGCCTAGCCAGACACCGGCCGTCGATACCGGTAGCCAGAGAGGTCGTGGCCTGTAGCACAGAGGCAGTAGCAGGGCGCCGGTGCCACCTTCGGTCTTCGCCCTTTGATTCCCGGCTTTCACTGAGTTTTAAC]

[+] EMBL BE040754             [GTCNATTCTGGAGCTCCATTCTGCGGCGGCCGCTCTAGAATAGTTTATCCCCCGGGCGGTAGGAATACAGCACGAGGCTCGACTGTGCTCGCCTTTCCCCTCTCACCATGCCACCTTGACCTTGCTCCCCGACGACCTCTACCACGCCACTGCTTGTCCTACTGAGGAAGCGGTGGCGGCGCCACGCCTCCACCAACACCCGGCGCCCGTGGGTGCACGCCGCGCCGTCACGGACGCGGGACGCCGTTCCTCGCATCGCCTCAGCGCCTCGCGGGGAGCCAGCGACGGTGGCCAACTCTCTCCGCTCTCTGGCCGGGCGGCCGGCGGGAGTCCGGCTCTCCGCGACTCCGGCTGTCCGCCACTCGGACGAGGCGGCAACTGCGCCTCTCCTCACGTGTCGCTGTGCCTCGCCGGTCGCAACCGTATCCGCTCCCACTCTGGCTGTCCTCGTCCGATAAATGTCTGGTCCAACTCCCGCTATCCGACGCGCCGATACCGCCTAGCCAGACACCGGCCGTCGATACCGGTAGCCAGAGAGGTCGTGGCCTGTAGCACAGAGGCAGTAGCAGGGCGCCGGTGCCACCTTCGGTCTTCGCCCTTTGATTCCCGGCTTTCACTGAGTTTTAAC]




>consensus_4894#0
GTCNATTCTGGAGCTCCATTCTGCGGCGGCCGCTCTAGAATAGTTTATCCCCCGGGCGGT
AGGAATACAGCACGAGGCTCGACTGTGCTCGCCTTTCCCCTCTCACCATGCCACCTTGAC
CTTGCTCCCCGACGACCTCTACCACGCCACTGCTTGTCCTACTGAGGAAGCGGTGGCGGC
GCCACGCCTCCACCAACACCCGGCGCCCGTGGGTGCACGCCGCGCCGTCACGGACGCGGG
ACGCCGTTCCTCGCATCGCCTCAGCGCCTCGCGGGGAGCCAGCGACGGTGGCCAACTCTC
TCCGCTCTCTGGCCGGGCGGCCGGCGGGAGTCCGGCTCTCCGCGACTCCGGCTGTCCGCC
ACTCGGACGAGGCGGCAACTGCGCCTCTCCTCACGTGTCGCTGTGCCTCGCCGGTCGCAA
CCGTATCCGCTCCCACTCTGGCTGTCCTCGTCCGATAAATGTCTGGTCCAACTCCCGCTA
TCCGACGCGCCGATACCGCCTAGCCAGACACCGGCCGTCGATACCGGTAGCCAGAGAGGT
CGTGGCCTGTAGCACAGAGGCAGTAGCAGGGCGCCGGTGCCACCTTCGGTCTTCGCCCTT
TGATTCCCGGCTTTCACTGAGTTTTAAC

consensusID : consensus_4894#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 597
fasta sequence

                              [CCTTCGCGTATCTGCCATCGCCGCTCCACTGTGCTCGCCTTTCCCCTCTCCACCATGCCACCTTGACCTTGCTCCCCGACGACCTCTACCACGCCACTGCTTGTCCTACTGAGGAAGCGGTGGCGGCGCCACGCCTCCACCAACACCCGGCGCCCGTGGGTGCACGCCGCGCCGTCACGGACGCGGGACGCCGTTCCTCGCATCGCCTCAGCGCCTCGCGGGGAGCCAGCGACGGTGGCCAACTCTCTCCGCTCTCTGGCCGGGCGGCCGGCGGCAGTCCGGCTCTCCGCGACTCCGCCTGTCCGCCACTCGGACGAGGCGGCAACTCCGCCTCTCCTCGCGTGTCGTTGTGCCTCGCCGGTCGCAGCCGTCTCCGCTCCCACTCTGCCTCTCCTCGCCCGCATAAATCTCTGCTCCAACTCCCGCTATCCGTCGCGCCGCTACCGCCTAGCCAGCCA-CCGGCCGCCGATACCGGGAGCCAGGGA-GGTCGTGGCGTGTAGCACAGCAGGCAGTAGCAGTGCGCCGGTGCCAACCTTCGGCCTTCGCCCTTCGATTCCGGCTTCCCCTGCAGTTTTACTGCCATAAAATCAGCTGGAA]

[+] EMBL CA754280             [CCTTCGCGTATCTGCCATCGCCGCTCCACTGTGCTCGCCTTTCCCCTCTCCACCATGCCACCTTGACCTTGCTCCCCGACGACCTCTACCACGCCACTGCTTGTCCTACTGAGGAAGCGGTGGCGGCGCCACGCCTCCACCAACACCCGGCGCCCGTGGGTGCACGCCGCGCCGTCACGGACGCGGGACGCCGTTCCTCGCATCGCCTCAGCGCCTCGCGGGGAGCCAGCGACGGTGGCCAACTCTCTCCGCTCTCTGGCCGGGCGGCCGGCGGCAGTCCGGCTCTCCGCGACTCCGCCTGTCCGCCACTCGGACGAGGCGGCAACTCCGCCTCTCCTCGCGTGTCGTTGTGCCTCGCCGGTCGCAGCCGTCTCCGCTCCCACTCTGCCTCTCCTCGCCCGCATAAATCTCTGCTCCAACTCCCGCTATCCGTCGCGCCGCTACCGCCTAGCCAGCCA CCGGCCGCCGATACCGGGAGCCAGGGA GGTCGTGGCGTGTAGCACAGCAGGCAGTAGCAGTGCGCCGGTGCCAACCTTCGGCCTTCGCCCTTCGATTCCGGCTTCCCCTGCAGTTTTACTGCCATAAAATCAGCTGGAA]
[+] EMBL BE040755             [                        TCCACTGTGCTCGCCTTTCCCCTCTCCACCATGCCACCTTGACCTTGCTCCCCGACGACCTCTACCACGCCACTGCTTGTCCTACTGAGGAAGCGGTGGCGGCGCCACGCCTCCACCAACACCCGGCGCCCGTGGGTGCACGCCGCGCCGT ACGGACGCGGGACGCCGTTCCTCGCATCGCCTCAGCGCCTCGCGGGGAGCCAGCGACGGTGGCCAACTCTCTCCGCTCTCTGGCCGGGCGGCCGGCGGCAGTCCGGCTCTCCGCGACTCCGCCTGTCCGCCACTCGGACGAGGCGGCAACTCCGCCTCTCCTCGCGTGTCGTTGTGCCTCGCCGGTCGCAGCCGTCTCCGCTCCCACTCTGCCTCTCCT GCCCGCATAAATCTCTGCTCCAACTCCCGGTATCCGTCGCGCCGCTACCGCCTAGCCAGCCACCCGGCCGNCGATACCGGGAGCCAGGGAGGGTCGTGGCGTGTAGCACAGAAGGCAGTAGCAGTGCGCCCGTGCCAACCTTCGG CTTCGCCCTTCGATTCCGGCTTTCCCTGCA                           ]




>consensus_4894#1
CCTTCGCGTATCTGCCATCGCCGCTCCACTGTGCTCGCCTTTCCCCTCTCCACCATGCCA
CCTTGACCTTGCTCCCCGACGACCTCTACCACGCCACTGCTTGTCCTACTGAGGAAGCGG
TGGCGGCGCCACGCCTCCACCAACACCCGGCGCCCGTGGGTGCACGCCGCGCCGTCACGG
ACGCGGGACGCCGTTCCTCGCATCGCCTCAGCGCCTCGCGGGGAGCCAGCGACGGTGGCC
AACTCTCTCCGCTCTCTGGCCGGGCGGCCGGCGGCAGTCCGGCTCTCCGCGACTCCGCCT
GTCCGCCACTCGGACGAGGCGGCAACTCCGCCTCTCCTCGCGTGTCGTTGTGCCTCGCCG
GTCGCAGCCGTCTCCGCTCCCACTCTGCCTCTCCTCGCCCGCATAAATCTCTGCTCCAAC
TCCCGCTATCCGTCGCGCCGCTACCGCCTAGCCAGCCACCGGCCGCCGATACCGGGAGCC
AGGGAGGTCGTGGCGTGTAGCACAGCAGGCAGTAGCAGTGCGCCGGTGCCAACCTTCGGC
CTTCGCCCTTCGATTCCGGCTTCCCCTGCAGTTTTACTGCCATAAAATCAGCTGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4894#0      GTCNATTCTGGAGCTCCATTCTGCGGCGGCCGCTCTAGAATAGTTTATCCCCCGGGCGGT 60
consensus_4894#1      ------------------------------------------------CCTTCGCGTATC 12
                                                                      **  ** *    

consensus_4894#0      AGGAATACAGCACGAGGCTCGACTGTGCTCGCCTTTCCCCTCTC-ACCATGCCACCTTGA 119
consensus_4894#1      TGCCAT------CGCCGCTCCACTGTGCTCGCCTTTCCCCTCTCCACCATGCCACCTTGA 66
                       *  **      **  **** *********************** ***************

consensus_4894#0      CCTTGCTCCCCGACGACCTCTACCACGCCACTGCTTGTCCTACTGAGGAAGCGGTGGCGG 179
consensus_4894#1      CCTTGCTCCCCGACGACCTCTACCACGCCACTGCTTGTCCTACTGAGGAAGCGGTGGCGG 126
                      ************************************************************

consensus_4894#0      CGCCACGCCTCCACCAACACCCGGCGCCCGTGGGTGCACGCCGCGCCGTCACGGACGCGG 239
consensus_4894#1      CGCCACGCCTCCACCAACACCCGGCGCCCGTGGGTGCACGCCGCGCCGTCACGGACGCGG 186
                      ************************************************************

consensus_4894#0      GACGCCGTTCCTCGCATCGCCTCAGCGCCTCGCGGGGAGCCAGCGACGGTGGCCAACTCT 299
consensus_4894#1      GACGCCGTTCCTCGCATCGCCTCAGCGCCTCGCGGGGAGCCAGCGACGGTGGCCAACTCT 246
                      ************************************************************

consensus_4894#0      CTCCGCTCTCTGGCCGGGCGGCCGGCGGGAGTCCGGCTCTCCGCGACTCCGGCTGTCCGC 359
consensus_4894#1      CTCCGCTCTCTGGCCGGGCGGCCGGCGGCAGTCCGGCTCTCCGCGACTCCGCCTGTCCGC 306
                      **************************** ********************** ********

consensus_4894#0      CACTCGGACGAGGCGGCAACTGCGCCTCTCCTCACGTGTCGCTGTGCCTCGCCGGTCGCA 419
consensus_4894#1      CACTCGGACGAGGCGGCAACTCCGCCTCTCCTCGCGTGTCGTTGTGCCTCGCCGGTCGCA 366
                      ********************* *********** ******* ******************

consensus_4894#0      ACCGTATCCGCTCCCACTCTGGCTGTCCTCGTCCG-ATAAATGTCTGGTCCAACTCCCGC 478
consensus_4894#1      GCCGTCTCCGCTCCCACTCTGCCTCTCCTCGCCCGCATAAATCTCTGCTCCAACTCCCGC 426
                       **** *************** ** ****** *** ****** **** ************

consensus_4894#0      TATCCGACGCGCCGATACCGCCTAGCCAGACACCGGCCGTCGATACCGGTAGCCAGAGAG 538
consensus_4894#1      TATCCGTCGCGCCGCTACCGCCTAGCCAGCCACCGGCCGCCGATACCGGGAGCCAGGGAG 486
                      ****** ******* ************** ********* ********* ****** ***

consensus_4894#0      GTCGTGGCCTGTAGCACAG-AGGCAGTAGCAGGGCGCCGGTGCCA-CCTTCGGTCTTCGC 596
consensus_4894#1      GTCGTGGCGTGTAGCACAGCAGGCAGTAGCAGTGCGCCGGTGCCAACCTTCGGCCTTCGC 546
                      ******** ********** ************ ************ ******* ******

consensus_4894#0      CCTTTGATTCCCGGCTTTCACTG-AGTTTTAAC------------------- 628
consensus_4894#1      CCTTCGATTCC-GGCTTCCCCTGCAGTTTTACTGCCATAAAATCAGCTGGAA 597
                      **** ****** ***** * *** *******