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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2453 fasta sequence
[CTCGCCCCCTCGAGTGGATCGGCCTGAATCCGGGGGCCTGGATTTGATCGCGCTAGGTGTGTAACTTGTGGACTTGGGCTGTAAATAGCTCAGGGACCGACAAAGTTATTAAAAATGGTGGTTCTTGCTGCTTCTATCATCTCAAAGTCAGGAAAAGCACTTGTTTCTAGACAGTATGTTGACATGACTCGCATAAGGATTGAAGGATTACTTGCAGCATTCCCTAAACTTGTTGGAAATGGAAAGCAGCACACTTACATTGAGACTGAAAATGTCTGTTACGTTTACCAACCTATTGAAGGCTTATATCTTGTAGTTATCACAAACAAACAAAGTAATATTCTTGAGGATCTCGACACGTTGAGGCTACTCTCCAAGCTTGTGCCTGAATACTGCCCCTCTCTCGATGACGATGGTGTTTGTAAAACAGCTTTTGAGCTTATATTTGCTTTTGACGAAGCCATTTCTCTTGGAAATAAGGAAAAAGTAACAGTTCAACAGGTCAAAGAATATTGTGAGATGGATAGTGTTGAAGAGATGGAGTACAAGCAGATGATGCAAGAGAAAATCAAGGAAACCAAAGATTTTATGAAGAAGAAAGTTATTGAGATTGAGAAAACCAGGGTGCACCCTACTCTTTTTTTGCAGACAAATATGACTTCTATTTAGCTAGTAGGCAAAATAGAGCTGTTACTTCTATTTAGTCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCTTGGCCTACTTCGGTTACAGTTACTATCAGTTCCTTCAATCTTTGATGATTACTTGAGTTACAGTTTATCTGTCTGGATAGACTTATGTTTTTTCTAGACTAGCTTGTTGGGCTTTAGAACCTGTAAGAATATATGATAAATTTAGTACTAACATAATTTCTACTAGCTAGACTGTATGATAGCCTTAGGAGAAATTAGGTCAAACAAGACAAAATAAAATTAGAGAAATATCATACAGGAAACATATCCCTTGGAATCATACTACATTATTGGTTACAATGACCTTTCTATACATTACTTGTTATTGTGTAGCTTTCAATCGTAAATTGTTGGTGTTTATGCAGATGGAGAAAGGCAAACATAACAAAGGAGGATACTCATCAATATCAGGTCCCCAGGTGATTGAAAAATCTTTCAATGACATGAGCATTAGTTGTACTGGATTTGGAAGTGGTTCTGGATTAGGTGGATTGAACACAGATACAGACACATTTACTAGCAGGCCCAAAGGTCGTACATCTGGAGGTACTACAGGTGCTGGTGAAGGCATTGGAATGAAATTAGGAAATACAAAGAAGACAACCAGTTCTTAGAATCATTGAAGGCTGAAGGTGAAGTCATTATGGAAGATTTTCAACCATGTTCTCTTCAGTCAAGGTCATCGCCTCTACCACCGAGTGATCCTGTCACAGTGGCTGTTGAAGAGAAACTCAATGTTGCAGTGAAAAGAGATGGTGGTGTTAATAATTTTGATGTTCAAGGAACACTTGCTCTGCTGGTCCTTAATGATGCAGATGGATTAATCCTGTTGCAGATTGAAAGCCAAGATATTCCTGGACTTAGTTTCAAAACACACCCCAATATCAACAAGGACTTGTTTAACAGTCAGCAAATTCTGGGGGCAAAAGATCCTATCAGGCCTTTCCCAAGTGGTCAAAATGAAACTCCTCTAGTGAAATGGAGAATACAGGGGATGAATGAGTCATCTTTACCTCTATCAGTCAATTGCTGGCCATCAATATTAGGAAATGAAACCTACGTCAACATCGAGTATGAAGCTTCTGAGATGTTTGACCTGCACAGTGTCATCATATCTATACCTCTTCCTGCACTTCGGGAGGCTCCACGTGTTAGACAGATAGACGGAGAGTGGAAGTATGATTCAAGAAACTCGGTTTTGGAATGGTCTATTATCCTTATTGATCAATCAAACCGCAGTGGATCCATGGAATTTGTTGTTCCTCCAGCTGATCCATCAATGTTTTACCCCATATCCGTTGGATTTTCCGCATCGAATACTTTCAGTAATGTGAAGGTTACTGGAATCCGCCCTTTGAATGAAGGTAGCAACCCTCCAAAGTATTCGCAGAGGGTTCGTTTGGTTGCTGATAATTATCAAGTGGTTTAACGCTCCAGTAATTGTTAATCAATATCTTGCTCTTGCCATGTGCGGCTAAGCAGCCATGGCAAGGAGAATGGTTTTGGATGTACAAAATGTGTAGACGAGTTTTTCTCCTGTAGCATGTTTGGCAAGTTGATTTTTCATCACCTCTTTTTTTTGGCAATCATTGCTGGATATACACTCAAGAAAGGCATTCAGTTCTTTGAGCCAATTAAATTTCACATTAGTGATTTTAGGAGCAAATATAATATAACTTGGTTCATGTCCCAAAATCATTCCACAACCACAACATGTGCGTACATCTTGAG]
[+] EMBL AK106813 [CTCGCCCCCTCGAGTGGATCGGCCTGAATCCGGGGGCCTGGATTTGATCGCGCTAGGTGTGTAACTTGTGGACTTGGGCTGTAAATAGCTCAGGGACCGACAAAGTTATTAAAAATGGTGGTTCTTGCTGCTTCTATCATCTCAAAGTCAGGAAAAGCACTTGTTTCTAGACAGTATGTTGACATGACTCGCATAAGGATTGAAGGATTACTTGCAGCATTCCCTAAACTTGTTGGAAATGGAAAGCAGCACACTTACATTGAGACTGAAAATGTCTGTTACGTTTACCAACCTATTGAAGGCTTATATCTTGTAGTTATCACAAACAAACAAAGTAATATTCTTGAGGATCTCGACACGTTGAGGCTACTCTCCAAGCTTGTGCCTGAATACTGCCCCTCTCTCGATGACGATGGTGTTTGTAAAACAGCTTTTGAGCTTATATTTGCTTTTGACGAAGCCATTTCTCTTGGAAATAAGGAAAAAGTAACAGTTCAACAGGTCAAAGAATATTGTGAGATGGATAGTGTTGAAGAGATGGAGTACAAGCAGATGATGCAAGAGAAAATCAAGGAAACCAAAGATTTTATGAAGAAGAAAGTTATTGAGATTGAGAAAACCAGGGTGCACCCTACTCTTTTTTTGCAGACAAATATGACTTCTATTTAGCTAGTAGGCAAAATAGAGCTGTTACTTCTATTTAGTCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCTTGGCCTACTTCGGTTACAGTTACTATCAGTTCCTTCAATCTTTGATGATTACTTGAGTTACAGTTTATCTGTCTGGATAGACTTATGTTTTTTCTAGACTAGCTTGTTGGGCTTTAGAACCTGTAAGAATATATGATAAATTTAGTACTAACATAATTTCTACTAGCTAGACTGTATGATAGCCTTAGGAGAAATTAGGTCAAACAAGACAAAATAAAATTAGAGAAATATCATACAGGAAACATATCCCTTGGAATCATACTACATTATTGGTTACAATGACCTTTCTATACATTACTTGTTATTGTGTAGCTTTCAATCGTAAATTGTTGGTGTTTATGCAGATGGAGAAAGGCAAACATAACAAAGGAGGATACTCATCAATATCAGGTCCCCAGGTGATTGAAAAATCTTTCAATGACATGAGCATTAGTTGTACTGGATTTGGAAGTGGTTCTGGATTAGGTGGATTGAACACAGATACAGACACATTTACTAGCAGGCCCAAAGGTCGTACATCTGGAGGTACTACAGGTGCTGGTGAAGGCATTGGAATGAAATTAGGAAATACAAAGAAGACAACCAGTTCTTAGAATCATTGAAGGCTGAAGGTGAAGTCATTATGGAAGATTTTCAACCATGTTCTCTTCAGTCAAGGTCATCGCCTCTACCACCGAGTGATCCTGTCACAGTGGCTGTTGAAGAGAAACTCAATGTTGCAGTGAAAAGAGATGGTGGTGTTAATAATTTTGATGTTCAAGGAACACTTGCTCTGCTGGTCCTTAATGATGCAGATGGATTAATCCTGTTGCAGATTGAAAGCCAAGATATTCCTGGACTTAGTTTCAAAACACACCCCAATATCAACAAGGACTTGTTTAACAGTCAGCAAATTCTGGGGGCAAAAGATCCTATCAGGCCTTTCCCAAGTGGTCAAAATGAAACTCCTCTAGTGAAATGGAGAATACAGGGGATGAATGAGTCATCTTTACCTCTATCAGTCAATTGCTGGCCATCAATATTAGGAAATGAAACCTACGTCAACATCGAGTATGAAGCTTCTGAGATGTTTGACCTGCACAGTGTCATCATATCTATACCTCTTCCTGCACTTCGGGAGGCTCCACGTGTTAGACAGATAGACGGAGAGTGGAAGTATGATTCAAGAAACTCGGTTTTGGAATGGTCTATTATCCTTATTGATCAATCAAACCGCAGTGGATCCATGGAATTTGTTGTTCCTCCAGCTGATCCATCAATGTTTTACCCCATATCCGTTGGATTTTCCGCATCGAATACTTTCAGTAATGTGAAGGTTACTGGAATCCGCCCTTTGAATGAAGGTAGCAACCCTCCAAAGTATTCGCAGAGGGTTCGTTTGGTTGCTGATAATTATCAAGTGGTTTAACGCTCCAGTAATTGTTAATCAATATCTTGCTCTTGCCATGTGCGGCTAAGCAGCCATGGCAAGGAGAATGGTTTTGGATGTACAAAATGTGTAGACGAGTTTTTCTCCTGTAGCATGTTTGGCAAGTTGATTTTTCATCACCTCTTTTTTTTGGCAATCATTGCTGGATATACACTCAAGAAAGGCATTCAGTTCTTTGAGCCAATTAAATTTCACATTAGTGATTTTAGGAGCAAATATAATATAACTTGGTTCATGTCCCAAAATCATTCCACAACCACAACATGTGCGTACATCTTGAG]
[-] EMBL D42377 [ aaACGAGTTTTTCTCCTGTAGCATGTTTGGCAAGTTGATTTTTCATCACCTCTTTTTTTTGGCAATCATTGCTGAATATACACTCAAGAAAGGCATTCAGTTCTTTGAGCCAATTAAATTTC CATTAGTGGTTTTA ]
consensusID : consensus_4897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence
[TTGGGCTGTAAATAGCTCAGGGACCGACAAAGTTATTAAAAATGGTGGTTCTTGCTGCTTCTATCATCTCAAAGTCAGGAAAAGCACTTGTTTCTAGACAGTATGTTGACATGACTCGCATAAGGATTGAAGGATTACTTTTTCATTCCCTAAACTTGTTGGAAATGGAAAGCAGCACACTTCTTTGAGACTGAAAATGTCCGTTACGTTTACCAACCTATTGAAGGCTTATATCTTGTAGTTATCACAAACAAACAAAGTAATATTCTTGAGGATCTCGACACGTTGAGGCTACTCTCCAAGCTTGTGCCTGAATACTGCCCCTCTCTCGATGACGATGGTGTTTGTAAAACAGCTTTTGAGCTTATATTTGCTTTTGACGAAGCCATTTCTCTTGGAAATAAGGAAAAAGTAACAGTTCAACAGGTCAAAGAATATTGTGAGATGGATAGTGTTGAAGAGATGGAGTACAAGCAGATGATGCAAGAGAAAATCAAGGAAACCAAAGATTTTATGAAGAAGAAAGTTATTGAGATTGAGAAAACCAGGATGGAGAAAGGCAAACATAACANAGGAGGATACTCATCAATATCAGGTCCCCAGGTGATTGAAAAATCTTTCAATGACATGAGCATTAG]
[+] EMBL CF307472 [TTGGGCTGTAAATAGCTCAGGGACCGACAAAGTTATTAAAAATGGTGGTTCTTGCTGCTTCTATCATCTCAAAGTCAGGAAAAGCACTTGTTTCTAGACAGTATGTTGACATGACTCGCATAAGGATTGAAGGATTACTTTTTCATTCCCTAAACTTGTTGGAAATGGAAAGCAGCACACTTCTTTGAGACTGAAAATGTCCGTTACGTTTACCAACCTATTGAAGGCTTATATCTTGTAGTTATCACAAACAAACAAAGTAATATTCTTGAGGATCTCGACACGTTGAGGCTACTCTCCAAGCTTGTGCCTGAATACTGCCCCTCTCTCGATGACGATGGTGTTTGTAAAACAGCTTTTGAGCTTATATTTGCTTTTGACGAAGCCATTTCTCTTGGAAATAAGGAAAAAGTAACAGTTCAACAGGTCAAAGAATATTGTGAGATGGATAGTGTTGAAGAGATGGAGTACAAGCAGATGATGCAAGAGAAAATCAAGGAAACCAAAGATTTTATGAAGAAGAAAGTTATTGAGATTGAGAAAACCAGGATGGAGAAAGGCAAACATAACANAGGAGGATACTCATCAATATCAGGTCCCCAGGTGATTGAAAAATCTTTCAATGACATGAGCATTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4897#0 CTCGCCCCCTCGAGTGGATCGGCCTGAATCCGGGGGCCTGGATTTGATCGCGCTAGGTGT 60
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 GTAACTTGTGGACTTGGGCTGTAAATAGCTCAGGGACCGACAAAGTTATTAAAAATGGTG 120
consensus_4897#1 -------------TTGGGCTGTAAATAGCTCAGGGACCGACAAAGTTATTAAAAATGGTG 47
***********************************************
consensus_4897#0 GTTCTTGCTGCTTCTATCATCTCAAAGTCAGGAAAAGCACTTGTTTCTAGACAGTATGTT 180
consensus_4897#1 GTTCTTGCTGCTTCTATCATCTCAAAGTCAGGAAAAGCACTTGTTTCTAGACAGTATGTT 107
************************************************************
consensus_4897#0 GACATGACTCGCATAAGGATTGAAGGATTACTTGCAGCATTCCCTAAACTTGTTGGAAAT 240
consensus_4897#1 GACATGACTCGCATAAGGATTGAAGGATTACTT-TTTCATTCCCTAAACTTGTTGGAAAT 166
********************************* ***********************
consensus_4897#0 GGAAAGCAGCACACTTACATTGAGACTGAAAATGTCTGTTACGTTTACCAACCTATTGAA 300
consensus_4897#1 GGAAAGCAGCACACTT-CTTTGAGACTGAAAATGTCCGTTACGTTTACCAACCTATTGAA 225
**************** * ***************** ***********************
consensus_4897#0 GGCTTATATCTTGTAGTTATCACAAACAAACAAAGTAATATTCTTGAGGATCTCGACACG 360
consensus_4897#1 GGCTTATATCTTGTAGTTATCACAAACAAACAAAGTAATATTCTTGAGGATCTCGACACG 285
************************************************************
consensus_4897#0 TTGAGGCTACTCTCCAAGCTTGTGCCTGAATACTGCCCCTCTCTCGATGACGATGGTGTT 420
consensus_4897#1 TTGAGGCTACTCTCCAAGCTTGTGCCTGAATACTGCCCCTCTCTCGATGACGATGGTGTT 345
************************************************************
consensus_4897#0 TGTAAAACAGCTTTTGAGCTTATATTTGCTTTTGACGAAGCCATTTCTCTTGGAAATAAG 480
consensus_4897#1 TGTAAAACAGCTTTTGAGCTTATATTTGCTTTTGACGAAGCCATTTCTCTTGGAAATAAG 405
************************************************************
consensus_4897#0 GAAAAAGTAACAGTTCAACAGGTCAAAGAATATTGTGAGATGGATAGTGTTGAAGAGATG 540
consensus_4897#1 GAAAAAGTAACAGTTCAACAGGTCAAAGAATATTGTGAGATGGATAGTGTTGAAGAGATG 465
************************************************************
consensus_4897#0 GAGTACAAGCAGATGATGCAAGAGAAAATCAAGGAAACCAAAGATTTTATGAAGAAGAAA 600
consensus_4897#1 GAGTACAAGCAGATGATGCAAGAGAAAATCAAGGAAACCAAAGATTTTATGAAGAAGAAA 525
************************************************************
consensus_4897#0 GTTATTGAGATTGAGAAAACCAGGGTGCACCCTA-CTCTTTTTTTGCAGACAAATA-TGA 658
consensus_4897#1 GTTATTGAGATTGAGAAAACCAGGATGGAGAAAGGCAAACATAACANAGGAGGATACTCA 585
************************ ** * * * ** *** * *
consensus_4897#0 CTTCTATTTAGCTAGTAGGCAAAATAGAGCTGTTACTTCTATTTAGTCCTCTTTTTTTTT 718
consensus_4897#1 TCAATATCAGGTCCCCAGGTGATTGAAAAATCTTTCAATGACATGAGCATTAG------- 638
*** * *** * * * * ** * * * * *
consensus_4897#0 TTTTTTTTTTTTTTTTTTTTTATCTTGGCCTACTTCGGTTACAGTTACTATCAGTTCCTT 778
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 CAATCTTTGATGATTACTTGAGTTACAGTTTATCTGTCTGGATAGACTTATGTTTTTTCT 838
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 AGACTAGCTTGTTGGGCTTTAGAACCTGTAAGAATATATGATAAATTTAGTACTAACATA 898
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 ATTTCTACTAGCTAGACTGTATGATAGCCTTAGGAGAAATTAGGTCAAACAAGACAAAAT 958
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 AAAATTAGAGAAATATCATACAGGAAACATATCCCTTGGAATCATACTACATTATTGGTT 1018
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 ACAATGACCTTTCTATACATTACTTGTTATTGTGTAGCTTTCAATCGTAAATTGTTGGTG 1078
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 TTTATGCAGATGGAGAAAGGCAAACATAACAAAGGAGGATACTCATCAATATCAGGTCCC 1138
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 CAGGTGATTGAAAAATCTTTCAATGACATGAGCATTAGTTGTACTGGATTTGGAAGTGGT 1198
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 TCTGGATTAGGTGGATTGAACACAGATACAGACACATTTACTAGCAGGCCCAAAGGTCGT 1258
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 ACATCTGGAGGTACTACAGGTGCTGGTGAAGGCATTGGAATGAAATTAGGAAATACAAAG 1318
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 AAGACAACCAGTTCTTAGAATCATTGAAGGCTGAAGGTGAAGTCATTATGGAAGATTTTC 1378
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 AACCATGTTCTCTTCAGTCAAGGTCATCGCCTCTACCACCGAGTGATCCTGTCACAGTGG 1438
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 CTGTTGAAGAGAAACTCAATGTTGCAGTGAAAAGAGATGGTGGTGTTAATAATTTTGATG 1498
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 TTCAAGGAACACTTGCTCTGCTGGTCCTTAATGATGCAGATGGATTAATCCTGTTGCAGA 1558
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 TTGAAAGCCAAGATATTCCTGGACTTAGTTTCAAAACACACCCCAATATCAACAAGGACT 1618
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 TGTTTAACAGTCAGCAAATTCTGGGGGCAAAAGATCCTATCAGGCCTTTCCCAAGTGGTC 1678
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 AAAATGAAACTCCTCTAGTGAAATGGAGAATACAGGGGATGAATGAGTCATCTTTACCTC 1738
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 TATCAGTCAATTGCTGGCCATCAATATTAGGAAATGAAACCTACGTCAACATCGAGTATG 1798
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 AAGCTTCTGAGATGTTTGACCTGCACAGTGTCATCATATCTATACCTCTTCCTGCACTTC 1858
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 GGGAGGCTCCACGTGTTAGACAGATAGACGGAGAGTGGAAGTATGATTCAAGAAACTCGG 1918
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 TTTTGGAATGGTCTATTATCCTTATTGATCAATCAAACCGCAGTGGATCCATGGAATTTG 1978
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 TTGTTCCTCCAGCTGATCCATCAATGTTTTACCCCATATCCGTTGGATTTTCCGCATCGA 2038
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 ATACTTTCAGTAATGTGAAGGTTACTGGAATCCGCCCTTTGAATGAAGGTAGCAACCCTC 2098
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 CAAAGTATTCGCAGAGGGTTCGTTTGGTTGCTGATAATTATCAAGTGGTTTAACGCTCCA 2158
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 GTAATTGTTAATCAATATCTTGCTCTTGCCATGTGCGGCTAAGCAGCCATGGCAAGGAGA 2218
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 ATGGTTTTGGATGTACAAAATGTGTAGACGAGTTTTTCTCCTGTAGCATGTTTGGCAAGT 2278
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 TGATTTTTCATCACCTCTTTTTTTTGGCAATCATTGCTGGATATACACTCAAGAAAGGCA 2338
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 TTCAGTTCTTTGAGCCAATTAAATTTCACATTAGTGATTTTAGGAGCAAATATAATATAA 2398
consensus_4897#1 ------------------------------------------------------------
consensus_4897#0 CTTGGTTCATGTCCCAAAATCATTCCACAACCACAACATGTGCGTACATCTTGAG 2453
consensus_4897#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||