These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2453 fasta sequence [CTCGCCCCCTCGAGTGGATCGGCCTGAATCCGGGGGCCTGGATTTGATCGCGCTAGGTGTGTAACTTGTGGACTTGGGCTGTAAATAGCTCAGGGACCGACAAAGTTATTAAAAATGGTGGTTCTTGCTGCTTCTATCATCTCAAAGTCAGGAAAAGCACTTGTTTCTAGACAGTATGTTGACATGACTCGCATAAGGATTGAAGGATTACTTGCAGCATTCCCTAAACTTGTTGGAAATGGAAAGCAGCACACTTACATTGAGACTGAAAATGTCTGTTACGTTTACCAACCTATTGAAGGCTTATATCTTGTAGTTATCACAAACAAACAAAGTAATATTCTTGAGGATCTCGACACGTTGAGGCTACTCTCCAAGCTTGTGCCTGAATACTGCCCCTCTCTCGATGACGATGGTGTTTGTAAAACAGCTTTTGAGCTTATATTTGCTTTTGACGAAGCCATTTCTCTTGGAAATAAGGAAAAAGTAACAGTTCAACAGGTCAAAGAATATTGTGAGATGGATAGTGTTGAAGAGATGGAGTACAAGCAGATGATGCAAGAGAAAATCAAGGAAACCAAAGATTTTATGAAGAAGAAAGTTATTGAGATTGAGAAAACCAGGGTGCACCCTACTCTTTTTTTGCAGACAAATATGACTTCTATTTAGCTAGTAGGCAAAATAGAGCTGTTACTTCTATTTAGTCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCTTGGCCTACTTCGGTTACAGTTACTATCAGTTCCTTCAATCTTTGATGATTACTTGAGTTACAGTTTATCTGTCTGGATAGACTTATGTTTTTTCTAGACTAGCTTGTTGGGCTTTAGAACCTGTAAGAATATATGATAAATTTAGTACTAACATAATTTCTACTAGCTAGACTGTATGATAGCCTTAGGAGAAATTAGGTCAAACAAGACAAAATAAAATTAGAGAAATATCATACAGGAAACATATCCCTTGGAATCATACTACATTATTGGTTACAATGACCTTTCTATACATTACTTGTTATTGTGTAGCTTTCAATCGTAAATTGTTGGTGTTTATGCAGATGGAGAAAGGCAAACATAACAAAGGAGGATACTCATCAATATCAGGTCCCCAGGTGATTGAAAAATCTTTCAATGACATGAGCATTAGTTGTACTGGATTTGGAAGTGGTTCTGGATTAGGTGGATTGAACACAGATACAGACACATTTACTAGCAGGCCCAAAGGTCGTACATCTGGAGGTACTACAGGTGCTGGTGAAGGCATTGGAATGAAATTAGGAAATACAAAGAAGACAACCAGTTCTTAGAATCATTGAAGGCTGAAGGTGAAGTCATTATGGAAGATTTTCAACCATGTTCTCTTCAGTCAAGGTCATCGCCTCTACCACCGAGTGATCCTGTCACAGTGGCTGTTGAAGAGAAACTCAATGTTGCAGTGAAAAGAGATGGTGGTGTTAATAATTTTGATGTTCAAGGAACACTTGCTCTGCTGGTCCTTAATGATGCAGATGGATTAATCCTGTTGCAGATTGAAAGCCAAGATATTCCTGGACTTAGTTTCAAAACACACCCCAATATCAACAAGGACTTGTTTAACAGTCAGCAAATTCTGGGGGCAAAAGATCCTATCAGGCCTTTCCCAAGTGGTCAAAATGAAACTCCTCTAGTGAAATGGAGAATACAGGGGATGAATGAGTCATCTTTACCTCTATCAGTCAATTGCTGGCCATCAATATTAGGAAATGAAACCTACGTCAACATCGAGTATGAAGCTTCTGAGATGTTTGACCTGCACAGTGTCATCATATCTATACCTCTTCCTGCACTTCGGGAGGCTCCACGTGTTAGACAGATAGACGGAGAGTGGAAGTATGATTCAAGAAACTCGGTTTTGGAATGGTCTATTATCCTTATTGATCAATCAAACCGCAGTGGATCCATGGAATTTGTTGTTCCTCCAGCTGATCCATCAATGTTTTACCCCATATCCGTTGGATTTTCCGCATCGAATACTTTCAGTAATGTGAAGGTTACTGGAATCCGCCCTTTGAATGAAGGTAGCAACCCTCCAAAGTATTCGCAGAGGGTTCGTTTGGTTGCTGATAATTATCAAGTGGTTTAACGCTCCAGTAATTGTTAATCAATATCTTGCTCTTGCCATGTGCGGCTAAGCAGCCATGGCAAGGAGAATGGTTTTGGATGTACAAAATGTGTAGACGAGTTTTTCTCCTGTAGCATGTTTGGCAAGTTGATTTTTCATCACCTCTTTTTTTTGGCAATCATTGCTGGATATACACTCAAGAAAGGCATTCAGTTCTTTGAGCCAATTAAATTTCACATTAGTGATTTTAGGAGCAAATATAATATAACTTGGTTCATGTCCCAAAATCATTCCACAACCACAACATGTGCGTACATCTTGAG] [+] EMBL AK106813 [CTCGCCCCCTCGAGTGGATCGGCCTGAATCCGGGGGCCTGGATTTGATCGCGCTAGGTGTGTAACTTGTGGACTTGGGCTGTAAATAGCTCAGGGACCGACAAAGTTATTAAAAATGGTGGTTCTTGCTGCTTCTATCATCTCAAAGTCAGGAAAAGCACTTGTTTCTAGACAGTATGTTGACATGACTCGCATAAGGATTGAAGGATTACTTGCAGCATTCCCTAAACTTGTTGGAAATGGAAAGCAGCACACTTACATTGAGACTGAAAATGTCTGTTACGTTTACCAACCTATTGAAGGCTTATATCTTGTAGTTATCACAAACAAACAAAGTAATATTCTTGAGGATCTCGACACGTTGAGGCTACTCTCCAAGCTTGTGCCTGAATACTGCCCCTCTCTCGATGACGATGGTGTTTGTAAAACAGCTTTTGAGCTTATATTTGCTTTTGACGAAGCCATTTCTCTTGGAAATAAGGAAAAAGTAACAGTTCAACAGGTCAAAGAATATTGTGAGATGGATAGTGTTGAAGAGATGGAGTACAAGCAGATGATGCAAGAGAAAATCAAGGAAACCAAAGATTTTATGAAGAAGAAAGTTATTGAGATTGAGAAAACCAGGGTGCACCCTACTCTTTTTTTGCAGACAAATATGACTTCTATTTAGCTAGTAGGCAAAATAGAGCTGTTACTTCTATTTAGTCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCTTGGCCTACTTCGGTTACAGTTACTATCAGTTCCTTCAATCTTTGATGATTACTTGAGTTACAGTTTATCTGTCTGGATAGACTTATGTTTTTTCTAGACTAGCTTGTTGGGCTTTAGAACCTGTAAGAATATATGATAAATTTAGTACTAACATAATTTCTACTAGCTAGACTGTATGATAGCCTTAGGAGAAATTAGGTCAAACAAGACAAAATAAAATTAGAGAAATATCATACAGGAAACATATCCCTTGGAATCATACTACATTATTGGTTACAATGACCTTTCTATACATTACTTGTTATTGTGTAGCTTTCAATCGTAAATTGTTGGTGTTTATGCAGATGGAGAAAGGCAAACATAACAAAGGAGGATACTCATCAATATCAGGTCCCCAGGTGATTGAAAAATCTTTCAATGACATGAGCATTAGTTGTACTGGATTTGGAAGTGGTTCTGGATTAGGTGGATTGAACACAGATACAGACACATTTACTAGCAGGCCCAAAGGTCGTACATCTGGAGGTACTACAGGTGCTGGTGAAGGCATTGGAATGAAATTAGGAAATACAAAGAAGACAACCAGTTCTTAGAATCATTGAAGGCTGAAGGTGAAGTCATTATGGAAGATTTTCAACCATGTTCTCTTCAGTCAAGGTCATCGCCTCTACCACCGAGTGATCCTGTCACAGTGGCTGTTGAAGAGAAACTCAATGTTGCAGTGAAAAGAGATGGTGGTGTTAATAATTTTGATGTTCAAGGAACACTTGCTCTGCTGGTCCTTAATGATGCAGATGGATTAATCCTGTTGCAGATTGAAAGCCAAGATATTCCTGGACTTAGTTTCAAAACACACCCCAATATCAACAAGGACTTGTTTAACAGTCAGCAAATTCTGGGGGCAAAAGATCCTATCAGGCCTTTCCCAAGTGGTCAAAATGAAACTCCTCTAGTGAAATGGAGAATACAGGGGATGAATGAGTCATCTTTACCTCTATCAGTCAATTGCTGGCCATCAATATTAGGAAATGAAACCTACGTCAACATCGAGTATGAAGCTTCTGAGATGTTTGACCTGCACAGTGTCATCATATCTATACCTCTTCCTGCACTTCGGGAGGCTCCACGTGTTAGACAGATAGACGGAGAGTGGAAGTATGATTCAAGAAACTCGGTTTTGGAATGGTCTATTATCCTTATTGATCAATCAAACCGCAGTGGATCCATGGAATTTGTTGTTCCTCCAGCTGATCCATCAATGTTTTACCCCATATCCGTTGGATTTTCCGCATCGAATACTTTCAGTAATGTGAAGGTTACTGGAATCCGCCCTTTGAATGAAGGTAGCAACCCTCCAAAGTATTCGCAGAGGGTTCGTTTGGTTGCTGATAATTATCAAGTGGTTTAACGCTCCAGTAATTGTTAATCAATATCTTGCTCTTGCCATGTGCGGCTAAGCAGCCATGGCAAGGAGAATGGTTTTGGATGTACAAAATGTGTAGACGAGTTTTTCTCCTGTAGCATGTTTGGCAAGTTGATTTTTCATCACCTCTTTTTTTTGGCAATCATTGCTGGATATACACTCAAGAAAGGCATTCAGTTCTTTGAGCCAATTAAATTTCACATTAGTGATTTTAGGAGCAAATATAATATAACTTGGTTCATGTCCCAAAATCATTCCACAACCACAACATGTGCGTACATCTTGAG] [-] EMBL D42377 [ aaACGAGTTTTTCTCCTGTAGCATGTTTGGCAAGTTGATTTTTCATCACCTCTTTTTTTTGGCAATCATTGCTGAATATACACTCAAGAAAGGCATTCAGTTCTTTGAGCCAATTAAATTTC CATTAGTGGTTTTA ] consensusID : consensus_4897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [TTGGGCTGTAAATAGCTCAGGGACCGACAAAGTTATTAAAAATGGTGGTTCTTGCTGCTTCTATCATCTCAAAGTCAGGAAAAGCACTTGTTTCTAGACAGTATGTTGACATGACTCGCATAAGGATTGAAGGATTACTTTTTCATTCCCTAAACTTGTTGGAAATGGAAAGCAGCACACTTCTTTGAGACTGAAAATGTCCGTTACGTTTACCAACCTATTGAAGGCTTATATCTTGTAGTTATCACAAACAAACAAAGTAATATTCTTGAGGATCTCGACACGTTGAGGCTACTCTCCAAGCTTGTGCCTGAATACTGCCCCTCTCTCGATGACGATGGTGTTTGTAAAACAGCTTTTGAGCTTATATTTGCTTTTGACGAAGCCATTTCTCTTGGAAATAAGGAAAAAGTAACAGTTCAACAGGTCAAAGAATATTGTGAGATGGATAGTGTTGAAGAGATGGAGTACAAGCAGATGATGCAAGAGAAAATCAAGGAAACCAAAGATTTTATGAAGAAGAAAGTTATTGAGATTGAGAAAACCAGGATGGAGAAAGGCAAACATAACANAGGAGGATACTCATCAATATCAGGTCCCCAGGTGATTGAAAAATCTTTCAATGACATGAGCATTAG] [+] EMBL CF307472 [TTGGGCTGTAAATAGCTCAGGGACCGACAAAGTTATTAAAAATGGTGGTTCTTGCTGCTTCTATCATCTCAAAGTCAGGAAAAGCACTTGTTTCTAGACAGTATGTTGACATGACTCGCATAAGGATTGAAGGATTACTTTTTCATTCCCTAAACTTGTTGGAAATGGAAAGCAGCACACTTCTTTGAGACTGAAAATGTCCGTTACGTTTACCAACCTATTGAAGGCTTATATCTTGTAGTTATCACAAACAAACAAAGTAATATTCTTGAGGATCTCGACACGTTGAGGCTACTCTCCAAGCTTGTGCCTGAATACTGCCCCTCTCTCGATGACGATGGTGTTTGTAAAACAGCTTTTGAGCTTATATTTGCTTTTGACGAAGCCATTTCTCTTGGAAATAAGGAAAAAGTAACAGTTCAACAGGTCAAAGAATATTGTGAGATGGATAGTGTTGAAGAGATGGAGTACAAGCAGATGATGCAAGAGAAAATCAAGGAAACCAAAGATTTTATGAAGAAGAAAGTTATTGAGATTGAGAAAACCAGGATGGAGAAAGGCAAACATAACANAGGAGGATACTCATCAATATCAGGTCCCCAGGTGATTGAAAAATCTTTCAATGACATGAGCATTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4897#0 CTCGCCCCCTCGAGTGGATCGGCCTGAATCCGGGGGCCTGGATTTGATCGCGCTAGGTGT 60 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 GTAACTTGTGGACTTGGGCTGTAAATAGCTCAGGGACCGACAAAGTTATTAAAAATGGTG 120 consensus_4897#1 -------------TTGGGCTGTAAATAGCTCAGGGACCGACAAAGTTATTAAAAATGGTG 47 *********************************************** consensus_4897#0 GTTCTTGCTGCTTCTATCATCTCAAAGTCAGGAAAAGCACTTGTTTCTAGACAGTATGTT 180 consensus_4897#1 GTTCTTGCTGCTTCTATCATCTCAAAGTCAGGAAAAGCACTTGTTTCTAGACAGTATGTT 107 ************************************************************ consensus_4897#0 GACATGACTCGCATAAGGATTGAAGGATTACTTGCAGCATTCCCTAAACTTGTTGGAAAT 240 consensus_4897#1 GACATGACTCGCATAAGGATTGAAGGATTACTT-TTTCATTCCCTAAACTTGTTGGAAAT 166 ********************************* *********************** consensus_4897#0 GGAAAGCAGCACACTTACATTGAGACTGAAAATGTCTGTTACGTTTACCAACCTATTGAA 300 consensus_4897#1 GGAAAGCAGCACACTT-CTTTGAGACTGAAAATGTCCGTTACGTTTACCAACCTATTGAA 225 **************** * ***************** *********************** consensus_4897#0 GGCTTATATCTTGTAGTTATCACAAACAAACAAAGTAATATTCTTGAGGATCTCGACACG 360 consensus_4897#1 GGCTTATATCTTGTAGTTATCACAAACAAACAAAGTAATATTCTTGAGGATCTCGACACG 285 ************************************************************ consensus_4897#0 TTGAGGCTACTCTCCAAGCTTGTGCCTGAATACTGCCCCTCTCTCGATGACGATGGTGTT 420 consensus_4897#1 TTGAGGCTACTCTCCAAGCTTGTGCCTGAATACTGCCCCTCTCTCGATGACGATGGTGTT 345 ************************************************************ consensus_4897#0 TGTAAAACAGCTTTTGAGCTTATATTTGCTTTTGACGAAGCCATTTCTCTTGGAAATAAG 480 consensus_4897#1 TGTAAAACAGCTTTTGAGCTTATATTTGCTTTTGACGAAGCCATTTCTCTTGGAAATAAG 405 ************************************************************ consensus_4897#0 GAAAAAGTAACAGTTCAACAGGTCAAAGAATATTGTGAGATGGATAGTGTTGAAGAGATG 540 consensus_4897#1 GAAAAAGTAACAGTTCAACAGGTCAAAGAATATTGTGAGATGGATAGTGTTGAAGAGATG 465 ************************************************************ consensus_4897#0 GAGTACAAGCAGATGATGCAAGAGAAAATCAAGGAAACCAAAGATTTTATGAAGAAGAAA 600 consensus_4897#1 GAGTACAAGCAGATGATGCAAGAGAAAATCAAGGAAACCAAAGATTTTATGAAGAAGAAA 525 ************************************************************ consensus_4897#0 GTTATTGAGATTGAGAAAACCAGGGTGCACCCTA-CTCTTTTTTTGCAGACAAATA-TGA 658 consensus_4897#1 GTTATTGAGATTGAGAAAACCAGGATGGAGAAAGGCAAACATAACANAGGAGGATACTCA 585 ************************ ** * * * ** *** * * consensus_4897#0 CTTCTATTTAGCTAGTAGGCAAAATAGAGCTGTTACTTCTATTTAGTCCTCTTTTTTTTT 718 consensus_4897#1 TCAATATCAGGTCCCCAGGTGATTGAAAAATCTTTCAATGACATGAGCATTAG------- 638 *** * *** * * * * ** * * * * * consensus_4897#0 TTTTTTTTTTTTTTTTTTTTTATCTTGGCCTACTTCGGTTACAGTTACTATCAGTTCCTT 778 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 CAATCTTTGATGATTACTTGAGTTACAGTTTATCTGTCTGGATAGACTTATGTTTTTTCT 838 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 AGACTAGCTTGTTGGGCTTTAGAACCTGTAAGAATATATGATAAATTTAGTACTAACATA 898 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 ATTTCTACTAGCTAGACTGTATGATAGCCTTAGGAGAAATTAGGTCAAACAAGACAAAAT 958 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 AAAATTAGAGAAATATCATACAGGAAACATATCCCTTGGAATCATACTACATTATTGGTT 1018 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 ACAATGACCTTTCTATACATTACTTGTTATTGTGTAGCTTTCAATCGTAAATTGTTGGTG 1078 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 TTTATGCAGATGGAGAAAGGCAAACATAACAAAGGAGGATACTCATCAATATCAGGTCCC 1138 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 CAGGTGATTGAAAAATCTTTCAATGACATGAGCATTAGTTGTACTGGATTTGGAAGTGGT 1198 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 TCTGGATTAGGTGGATTGAACACAGATACAGACACATTTACTAGCAGGCCCAAAGGTCGT 1258 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 ACATCTGGAGGTACTACAGGTGCTGGTGAAGGCATTGGAATGAAATTAGGAAATACAAAG 1318 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 AAGACAACCAGTTCTTAGAATCATTGAAGGCTGAAGGTGAAGTCATTATGGAAGATTTTC 1378 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 AACCATGTTCTCTTCAGTCAAGGTCATCGCCTCTACCACCGAGTGATCCTGTCACAGTGG 1438 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 CTGTTGAAGAGAAACTCAATGTTGCAGTGAAAAGAGATGGTGGTGTTAATAATTTTGATG 1498 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 TTCAAGGAACACTTGCTCTGCTGGTCCTTAATGATGCAGATGGATTAATCCTGTTGCAGA 1558 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 TTGAAAGCCAAGATATTCCTGGACTTAGTTTCAAAACACACCCCAATATCAACAAGGACT 1618 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 TGTTTAACAGTCAGCAAATTCTGGGGGCAAAAGATCCTATCAGGCCTTTCCCAAGTGGTC 1678 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 AAAATGAAACTCCTCTAGTGAAATGGAGAATACAGGGGATGAATGAGTCATCTTTACCTC 1738 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 TATCAGTCAATTGCTGGCCATCAATATTAGGAAATGAAACCTACGTCAACATCGAGTATG 1798 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 AAGCTTCTGAGATGTTTGACCTGCACAGTGTCATCATATCTATACCTCTTCCTGCACTTC 1858 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 GGGAGGCTCCACGTGTTAGACAGATAGACGGAGAGTGGAAGTATGATTCAAGAAACTCGG 1918 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 TTTTGGAATGGTCTATTATCCTTATTGATCAATCAAACCGCAGTGGATCCATGGAATTTG 1978 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 TTGTTCCTCCAGCTGATCCATCAATGTTTTACCCCATATCCGTTGGATTTTCCGCATCGA 2038 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 ATACTTTCAGTAATGTGAAGGTTACTGGAATCCGCCCTTTGAATGAAGGTAGCAACCCTC 2098 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 CAAAGTATTCGCAGAGGGTTCGTTTGGTTGCTGATAATTATCAAGTGGTTTAACGCTCCA 2158 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 GTAATTGTTAATCAATATCTTGCTCTTGCCATGTGCGGCTAAGCAGCCATGGCAAGGAGA 2218 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 ATGGTTTTGGATGTACAAAATGTGTAGACGAGTTTTTCTCCTGTAGCATGTTTGGCAAGT 2278 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 TGATTTTTCATCACCTCTTTTTTTTGGCAATCATTGCTGGATATACACTCAAGAAAGGCA 2338 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 TTCAGTTCTTTGAGCCAATTAAATTTCACATTAGTGATTTTAGGAGCAAATATAATATAA 2398 consensus_4897#1 ------------------------------------------------------------ consensus_4897#0 CTTGGTTCATGTCCCAAAATCATTCCACAACCACAACATGTGCGTACATCTTGAG 2453 consensus_4897#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||