cluster # 4899

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Oryza sativa
cluster # 4899 cluster # 4899 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4899#0 length = 383 sequences # 1

consensus_4899#1 length = 358 sequences # 2

consensusID : consensus_4899#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence

                              [TGGTTGAGGATGTTATCAGCGAAGCAATTCTGTCTGGTCCAGTTCAAGTCCTGGTGACACCATAATGGTGGACACTGATGCCCACGGGGAAACCTTGCTTGAGCCCGACTGAATGATCAGACCGTCCAATTATCCGATCCGACACCAACACTTTGAAGGTTCAAACNCCCTATGTATATTCGTGATTTACTCATTTATTCTTCCACACCGATAAGCAAGCTTCTTGTGCATGCATAGGTTCCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATTTGAATCTAACATCAACTGTACATATCATTGAATTTCAAAAGGTNCTTGAACNNTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU056952             [TGGTTGAGGATGTTATCAGCGAAGCAATTCTGTCTGGTCCAGTTCAAGTCCTGGTGACACCATAATGGTGGACACTGATGCCCACGGGGAAACCTTGCTTGAGCCCGACTGAATGATCAGACCGTCCAATTATCCGATCCGACACCAACACTTTGAAGGTTCAAACNCCCTATGTATATTCGTGATTTACTCATTTATTCTTCCACACCGATAAGCAAGCTTCTTGTGCATGCATAGGTTCCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATTTGAATCTAACATCAACTGTACATATCATTGAATTTCAAAAGGTNCTTGAACNNTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4899#0
TGGTTGAGGATGTTATCAGCGAAGCAATTCTGTCTGGTCCAGTTCAAGTCCTGGTGACAC
CATAATGGTGGACACTGATGCCCACGGGGAAACCTTGCTTGAGCCCGACTGAATGATCAG
ACCGTCCAATTATCCGATCCGACACCAACACTTTGAAGGTTCAAACNCCCTATGTATATT
CGTGATTTACTCATTTATTCTTCCACACCGATAAGCAAGCTTCTTGTGCATGCATAGGTT
CCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATT
TGAATCTAACATCAACTGTACATATCATTGAATTTCAAAAGGTNCTTGAACNNTTTAAAA
AAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_4899#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 358
fasta sequence

                              [ATTCTGTCTGGTCAGTTCAAGCCTGGTGACACCATAATGGTGGACACTGAT-GCC-ACGGGG--AAA-CCTTGCTTGAGCCGACTGAATGATCAGACCGTCCAATTATCCGATCCGACACCAACACTTTGAAGGTTCAAACACCCTATGT-ATATTCGTGATTTACTCAT-TTATTCTTCCACAC-CGATAAGCAAGCTTCTTGTGCATGCATAGGTTCCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATTTGAATCTAACATCAACTGTACATATCATTGAATTTCAAAAGGTACTTGAACCATTTACATGATTAGATGGTCCATACGCATCCAAAAA]

[+] EMBL AK061666             [ATTCTGTCTGGTCAGTTCAAGCCTGGTGACACCATAATGGTGGACACTGAT GCC ACGGGG  AAA CCTTGCTTGAGCCGACTGAATGATCAGACCGTCCAATTATCCGATCCGACACCAACACTTTGAAGGTTCAAACACCCTATGT ATATTCGTGATTTACTCAT TTATTCTTCCACAC CGATAAGCAAGCTTCTTGTGCATGCATAGGTTCCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATTTGAATCTAACATCAACTGTACATATCATTGAATTTCAAAAGGTACTTGAACCATTTACATGATTAGATGGTCC               ]
[+] EMBL BI807814             [                                 tgAATGATGGACACTGATGGCCAACGGGGGAAAACCCTTGCTTGAGCCGACTGAATGATCAGACCGTCCAATGAGCCGATCCGACACCTACACTTTGAAGGTTCAAATACCCTATGTGATATTCGTGAGTTACTCATGTTATTCTTCCACACACGATAAGCAAGCTTCTTGTGCATGCATAGGTTCCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATTTGAATCTAACATC ACTGTACATATCATTGAATTTCAAAAGGTACTTGAACCATTTACATGATTAGATGGTCCATACGCATCCAAAAA]




>consensus_4899#1
ATTCTGTCTGGTCAGTTCAAGCCTGGTGACACCATAATGGTGGACACTGATGCCACGGGG
AAACCTTGCTTGAGCCGACTGAATGATCAGACCGTCCAATTATCCGATCCGACACCAACA
CTTTGAAGGTTCAAACACCCTATGTATATTCGTGATTTACTCATTTATTCTTCCACACCG
ATAAGCAAGCTTCTTGTGCATGCATAGGTTCCATAGTTCATGTACATAGCCTCCACATGC
TGGAATTTCTCCATGCATATAATGTAAATTTGAATCTAACATCAACTGTACATATCATTG
AATTTCAAAAGGTACTTGAACCATTTACATGATTAGATGGTCCATACGCATCCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4899#0      TGGTTGAGGATGTTATCAGCGAAGCAATTCTGTCTGGTCCAGTTCAAGTCCTGGTGACAC 60
consensus_4899#1      --------------------------ATTCTGTCTGGTC-AGTTCAAG-CCTGGTGACAC 32
                                                ************* ******** ***********

consensus_4899#0      CATAATGGTGGACACTGATGCCCACGGGGAAACCTTGCTTGAGCCCGACTGAATGATCAG 120
consensus_4899#1      CATAATGGTGGACACTGATGCC-ACGGGGAAACCTTGCTTGAGCC-GACTGAATGATCAG 90
                      ********************** ********************** **************

consensus_4899#0      ACCGTCCAATTATCCGATCCGACACCAACACTTTGAAGGTTCAAACNCCCTATGTATATT 180
consensus_4899#1      ACCGTCCAATTATCCGATCCGACACCAACACTTTGAAGGTTCAAACACCCTATGTATATT 150
                      ********************************************** *************

consensus_4899#0      CGTGATTTACTCATTTATTCTTCCACACCGATAAGCAAGCTTCTTGTGCATGCATAGGTT 240
consensus_4899#1      CGTGATTTACTCATTTATTCTTCCACACCGATAAGCAAGCTTCTTGTGCATGCATAGGTT 210
                      ************************************************************

consensus_4899#0      CCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATT 300
consensus_4899#1      CCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATT 270
                      ************************************************************

consensus_4899#0      TGAATCTAACATCAACTGTACATATCATTGAATTTCAAAAGGTNCTTGAACNNTTTAAAA 360
consensus_4899#1      TGAATCTAACATCAACTGTACATATCATTGAATTTCAAAAGGTACTTGAACCATTTACAT 330
                      ******************************************* *******  **** * 

consensus_4899#0      AAAAAAAAAAAAAAAAAA-----AAAAA 383
consensus_4899#1      GATTAGATGGTCCATACGCATCCAAAAA 358
                       *  * *      * *       *****