These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence [CTTTTTTTTTAGTTAAATAGAGGATTAATAATCCAAACAGTGAAACAGTTACGATGATTCACAAATCTTCTGGCAACATGCCATCAAACAAAAGGACCACAGAAACTAGATAAAGTTTTTGTTCTAATTAGACACTAAGAAGCCACACAAGGCAACTTTTTAGGGATAACAAAATAATAGTTAACAAAAACATAGATATAAACTGAGATAGTTCTTGATCTCCATGGACCATCATCAGCCATCTTGATTTGTTGCCACCAGCCTGTAAGAGGTGTGTTGAAGAGGTGCAACACAGTAGACATCAAAGCTTAATTGTTCCTCACTGGTTTTTTGAAATATATCTTCTCTCATGCATTTCAACATTGCAACAAGCTCATACCTTACATCATCAGGCATATCTCTTGTGTCTTTGTTCAGTAACTCTCTATATGCTGCAATCATAGCGGTCTGGCAACCAACCTTCTTCGCTTCAAGATTATCACTAGCAACACGTCGCTGGGTCTCCAACAATTTACTTTGCTGCTCCTTGGCTGCTTCATGTGCATCCATAAACTTGTGGATGTCATCTTCTAGCTCAGCATTACAATCTTGAACCTTGCCTTTTCCTTTGCCTATACGCTGCGCCTTAGCTGCCTTGACTCCCATTGGACGTGGGATCTCCTCGTCATCAAGGGGGATAGCATCAGCATAATCTCGCTTCCTTTTGTTCGACTTGTCAAGCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGTGCTTCTCGGTCCTAGTGGCATTTCCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGACACCCTTCAGTCAC] [+] EMBL CB621836 [CTTTTTTTTTAGTTAAATAGAGGATTAATAATCCAAACAGTGAAACAGTTACGATGATTCACAAATCTTCTGGCAACATGCCATCAAACAAAAGGACCACAGAAACTAGATAAAGTTTTTGTTCTAATTAGACACTAAGAAGCCACACAAGGCAACTTTTTAGGGATAACAAAATAATAGTTAACAAAAACATAGATATAAACTGAGATAGTTCTTGATCTCCATGGACCATCATCAGCCATCTTGATTTGTTGCCACCAGCCTGTAAGAGGTGTGTTGAAGAGGTGCAACACAGTAGACATCAAAGCTTAATTGTTCCTCACTGGTTTTTTGAAATATATCTTCTCTCATGCATTTCAACATTGCAACAAGCTCATACCTTACATCATCAGGCATATCTCTTGTGTCTTTGTTCAGTAACTCTCTATATGCTGCAATCATAGCGGTCTGGCAACCAACCTTCTTCGCTTCAAGATTATCACTAGCAACACGTCGCTGGGTCTCCAACAATTTACTTTGCTGCTCCTTGGCTGCTTCATGTGCATCCATAAACTTGTGGATGTCATCTTCTAGCTCAGCATTACAATCTTGAACCTTGCCTTTTCCTTTGCCTATACGCTGCGCCTTAGCTGCCTTGACTCCCATTGGACGTGGGATCTCCTCGTCATCAAGGGGGATAGCATCAGCATAATCTCGCTTCCTTTTGTTCGACTTGTCAAGCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGTGCTTCTCGGTCCTAGTGGCATTTCCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGACACCCTTCAGTCAC] [+] EMBL CB621835 [ ATTAATAATCCAAACA CCCTACAGTTACGATGATTCACAAATCTTCTGGCAACATGCCATCAAACAAAAGGACCACAGAAACTAGATAAAGTTTTTGTTCTAATTAGACACTAAGAAGCCACACAAGGCAACTTTTTAGGGATAACAAAATAATAGTTAACAAAAACATAGATATAAACTGAGATAGTTCTTGATCTCCATGGACCATCATCAGCCATCTTGATTTGTTGCCACCAGCCTGTAAGAGGTGTGTTGAAGAGGTGCAACACAGTAGACATCAAAGCTTAATTGTTCCTCACTGGTTTTTTGAAATATATCTTCTCTCATGCATTTCAACATTGCAACAAGCTCATACCTTACATCATCAGGCATATCTCTTGTGTCTTTGTTCAGTAACTCTCTATATGCTGCAATCATAGCGGTCTGGCAACCAACCTTCTTCGCTTCAAGATTATCACTAGCAACACGTCGCTGGGTCTCCAACAATTTACTTTGCTGCTCCTTGGCTGCTTCATGTGCATCCATAAACTTGTGGATGTCATCTTCTAGCTCAGCATTACAATCTTGAACCTTGCCTTTTCCTTTGCCTATACGCTGCGCCTTAGCTGCCTTGACTCCCATTGGACGTGGGATCTCCTCGTCATCAAGGGGGATAGCATCAGCATAATCTCG ] consensusID : consensus_4903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [TTCTTGATCTCCCATGGACCATCATCAGCCATCTTAATTTGTTGCCACCAGCCTGTAAGACGTGTGTTGCAGAGGTGCAACACAGTAGACATCAAAAGCCTAATTGTTCCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGCGCTTCTCGGTCCTAGTGGCATTACCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGATGCCCTTCAGTCACATGGTGCATAGGGTTCGTGGTGTTTTTGATAAAATTAACCAAACCACCGAGCGGGCGAGATTCTAGTCCCCATTGTTCCAAATCAATTTGGACGTCCGTCTAGGCATCAGTAGGAGGACGATATGCAGATGAGCCCGCCATGGCTTGTGACGGTGGAAAAGGAAACCATGATGTCTGTGGGGTGGGGAACAAAGGACCTCCATATGGATACGGTGCTGCCGGCAGGATATGAACACCGGGAGGACCAGACGAGCTTGCAGACGAGTTTGCAGTGGCGCAAGGGGGTGGCGCAACCTCTCTCTTCGTCCGACGAGACATGGTGGAAGGGAACTAGGGTTTTGGTGCGGTAGAACTGTGGAAGAGGACAGGGGCGGCGGCCGTCGATCTATCCACCGGGGAGATGGGTTTTAGGGGCGATTTTGGGGCTTTGGCATTGTTCTACCTGCCAGCCCCCCTT] [-] EMBL CA765670 [TTCTTGATCTCCCATGGACCATCATCAGCCATCTTAATTTGTTGCCACCAGCCTGTAAGACGTGTGTTGCAGAGGTGCAACACAGTAGACATCAAAAGCCTAATTGTTCCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGCGCTTCTCGGTCCTAGTGGCATTACCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGATGCCCTTCAGTCACATGGTGCATAGGGTTCGTGGTGTTTTTGATAAAATTAACCAAACCACCGAGCGGGCGAGATTCTAGTCCCCATTGTTCCAAATCAATTTGGACGTCCGTCTAGGCATCAGTAGGAGGACGATATGCAGATGAGCCCGCCATGGCTTGTGACGGTGGAAAAGGAAACCATGATGTCTGTGGGGTGGGGAACAAAGGACCTCCATATGGATACGGTGCTGCCGGCAGGATATGAACACCGGGAGGACCAGACGAGCTTGCAGACGAGTTTGCAGTGGCGCAAGGGGGTGGCGCAACCTCTCTCTTCGTCCGACGAGACATGGTGGAAGGGAACTAGGGTTTTGGTGCGGTAGAACTGTGGAAGAGGACAGGGGCGGCGGCCGTCGATCTATCCACCGGGGAGATGGGTTTTAGGGGCGATTTTGGGGCTTTGGCATTGTTCTACCTGCCAGCCCCCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4903#0 CTTTTTTTTTAGTTAAATAGAGGATTAATAATCCAAACAGTGAAACAGTTACGATGATTC 60 consensus_4903#1 ------------------------------------------------------------ consensus_4903#0 ACAAATCTTCTGGCAACATGCCATCAAACAAAAGGACCACAGAAACTAGATAAAGTTTTT 120 consensus_4903#1 ------------------------------------------------------------ consensus_4903#0 GTTCTAATTAGACACTAAGAAGCCACACAAGGCAACTTTTTAGGGATAACAAAATAATAG 180 consensus_4903#1 ------------------------------------------------------------ consensus_4903#0 TTAACAAAAACATAGATATAAACTGAGATAGTTCTTGATCTCC-ATGGACCATCATCAGC 239 consensus_4903#1 -------------------------------TTCTTGATCTCCCATGGACCATCATCAGC 29 ************ **************** consensus_4903#0 CATCTTGATTTGTTGCCACCAGCCTGTAAGAGGTGTGTTGAAGAGGTGCAACACAGTAGA 299 consensus_4903#1 CATCTTAATTTGTTGCCACCAGCCTGTAAGACGTGTGTTGCAGAGGTGCAACACAGTAGA 89 ****** ************************ ******** ******************* consensus_4903#0 CATCAAA-GCTTAATTGTTCC--TCACTGGTTTTTTGAAATATATCTTCTCTCATGCATT 356 consensus_4903#1 CATCAAAAGCCTAATTGTTCCAGCCTCAAGTCTTCTTCAGTTGACCAGCCTAGGCGCTTC 149 ******* ** ********** * * ** ** * * * * * * ** * consensus_4903#0 TCAACATT-GCAACAAGCTCATACCTTACATCATCAGGCATATCTC-TTGTGTCT----T 410 consensus_4903#1 TCGGTCCTAGTGGCATTACCATTGTTGCCATTCTCAACATTAATTGGCTGCAACTGATGC 209 ** * * ** *** * *** *** ** * ** ** consensus_4903#0 TGTTCAGTAACTCTCTATATGCTGCAATCATAGCGGTCTGG-------CAACCAACCTTC 463 consensus_4903#1 CCTTCAGTCACATGGTGCATA--GGGTTCGTGGTGTTTTTGATAAAATTAACCAAACCAC 267 ****** ** * ** * ** * * * * * * ****** * * consensus_4903#0 TTCGCTT-CAAGATTATCACTAGCAACACGTCGCTGGGTCTCCAACAATTTACTTTGCTG 522 consensus_4903#1 CGAGCGGGCGAGATTCTAGTCCCCATTGTTCCAAATCAATTTGGACGTCCGTCTAGGCAT 327 ** * ***** * ** * * ** ** ** consensus_4903#0 CTCCTTGGCTGCTTCATGTGCAT----CCATAA--ACTTGTGGATGTCATCTTCTAGCTC 576 consensus_4903#1 CAGTAGGAGGACGATATGCAGATGAGCCCGCCATGGCTTGTGACGGTGGAAAAGGAAACC 387 * * * *** ** ** * ****** ** * * consensus_4903#0 AGCAT-----TACAATCTTGAACCTTGCCTTTTCCTTTGCCTATACGCTGC-GCCTTAGC 630 consensus_4903#1 ATGATGTCTGTGGGGTGGGGAACAAAGGACCTCCATATGG--ATACGGTGCTGCCGGCAG 445 * ** * * **** * * * * ** ***** *** *** consensus_4903#0 TGCCTTGACTCCCATTGGACGTGG-GATCTCCTCG------TCATCAAGGGGGATAGCAT 683 consensus_4903#1 GATATGAACACCGGGAGGACCAGACGAGCTTGCAGACGAGTTTGCAGTGGCGCAAGGGGG 505 * ** ** **** * ** ** * * ** * * * consensus_4903#0 CAGCATAA--TCTCGCTTCCTTTTGTTCGACTTGTC--AAGCAGCCTCAAGTCTTCTT-C 738 consensus_4903#1 TGGCGCAACCTCTCTCTTCGTCCGACGAGACATGGTGGAAGGGAACTAGGGTTTTGGTGC 565 ** ** **** **** * *** ** *** ** ** ** * * consensus_4903#0 AGTTGACCAGCCTAGGTGCTTCTCGGTCCTAGT----GGCATTTCCATTGTTGCCAT--- 791 consensus_4903#1 GGTAGAACTGTGGAAGAGGACAGGGGCGGCGGCCGTCGATCTATCCACCGGGGAGATGGG 625 ** ** * * * * * ** * * * **** * * ** consensus_4903#0 TCTCAACATTAATTGGCTGCAACTGACACCCTTCAGTCAC------------ 831 consensus_4903#1 TTTTAGGGGCGATTTTGGGGCTTTGGCATTGTTCTACCTGCCAGCCCCCCTT 677 * * * *** * ** ** *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||