Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4906 cluster # 4906       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4906#0 length = 1195 sequences # 3  

consensusID : consensus_4906#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1195
fasta sequence
                              [ACCCTCTCGTCCGCGTGACATCTGGATCGCCGGCGGAATCGAGTATGGAGGAGGAGCGGCGCGTGCTCGTGACCGGCGGCAATGGTTTCATCGGATCCTGGATCGTGCGGATCCTTCTCGCACGCGGGTACGCCGTGACCGCAACCTACCAGCCGGGCACGGACGCTGCGCACCTCCTCGCCCTCGACGACGAAAGGCTCCTCCTGCTCCCCGCCGACCTGCTTGATGCGGGCGCCATCTCCGCGGCGGCGGCAGCGGGCGGGGGCTGCCGGGCGGGCGTGCTGCACGTGGCCTCCCCGTGCACGCTGGC-TGACCCGCGGGATCCGCAGGCCGAACTGGTGGAGCCGGCGGTGCGGGGCACGCTGCACGTGCTGGAGGCGGCGCGGGGCGCGGGAGCGCGGCGCGTGGTGGTGACGTCCTCCATCTCAGCCATGGTGCCCAACCCGGGGTTGGCGGCGGGAGAGCTCGTCGACGAGCGAAGCTGGACGGACATGGAATTCTGCAAGGCCCGGGGCAAGTGGTACCCGGTGTCCAAGACGCTGGCCGAGAGGGCGGCGTGGGAGTACGCGGCGCGGTGGCCCGGCTTCGAGTTGGCCACCATCCTGCCGTCGACATGCCTCGGCCCGCTCCTGTAGCCCACCCTGAACGCCAGCTCTGTCGTGCTGCAGCGCCTCTTGCAGGGCTCCACGGACGACCAGGCGGACTACTGGCTCGGCGCCGTCCACGTCCGCGACGTCGCCGCCGCCCACCTCCTGCTGCTCGAGGCTCCCACCGTCTCCGGGAGGTACCTCTGCACCAACGGCATCTACCAGTTCAGCGACTTCGCACGGCTAGCTGCCAGGATCTGCCCCGCGTACGCCCACGCCATCCACCGCTTCGAGGAGGGGACTACACAACCGTGGCTCGTGCCGCGCGACGCCCGTGACGCAGCACGCCGGCTCCTCGACCTCGGCCTCGTCCTCACTCCCCTCGAGGAGGCCATCAAGGACGCGGAGAAGAGTCTCACCGATAAATGCTTCCTTCCTTGATACTCATAATAATTACTGTACCTATAGGAGTAGTATATTGTTTCCTTCATTTTGTTTTAAGACTCAATTTATACTTAGTAATTGAACC-GTGCTAACGCTACGGTAATATTTAGTAATGCAAATTAAACTATTAAAGTTTAACATTNTTAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK062411             [ACCCTCTCGTCCGCGTGACATCTGGATCGCCGGCGGAATCGAGTATGGAGGAGGAGCGGCGCGTGCTCGTGACCGGCGGCAATGGTTTCATCGGATCCTGGATCGTGCGGATCCTTCTCGCACGCGGGTACGCCGTGACCGCAACCTACCAGCCGGGCACGGACGCTGCGCACCTCCTCGCCCTCGACGACGAAAGGCTCCTCCTGCTCCCCGCCGACCTGCTTGATGCGGGCGCCATCTCCGCGGCGGCGGCAGCGGGCGGGGGCTGCCGGGCGGGCGTGCTGCACGTGGCCTCCCCGTGCACGCTGGC TGACCCGCGGGATCCGCAGGCCGAACTGGTGGAGCCGGCGGTGCGGGGCACGCTGCACGTGCTGGAGGCGGCGCGGGGCGCGGGAGCGCGGCGCGTGGTGGTGACGTCCTCCATCTCAGCCATGGTGCCCAACCCGGGGTTGGCGGCGGGAGAGCTCGTCGACGAGCGAAGCTGGACGGACATGGAATTCTGCAAGGCCCGGGGCAAGTGGTACCCGGTGTCCAAGACGCTGGCCGAGAGGGCGGCGTGGGAGTACGCGGCGCGGTGGCCCGGCTTCGAGTTGGCCACCATCCTGCCGTCGACATGCCTCGGCCCGCTCCTGTAGCCCACCCTGAACGCCAGCTCTGTCGTGCTGCAGCGCCTCTTGCAGGGCTCCACGGACGACCAGGCGGACTACTGGCTCGGCGCCGTCCACGTCCGCGACGTCGCCGCCGCCCACCTCCTGCTGCTCGAGGCTCCCACCGTCTCCGGGAGGTACCTCTGCACCAACGGCATCTACCAGTTCAGCGACTTCGCACGGCTAGCTGCCAGGATCTGCCCCGCGTACGCCCACGCCATCCACCGCTTCGAGGAGGGGACTACACAACCGTGGCTCGTGCCGCGCGACGCCCGTGACGCAGCACGCCGGCTCCTCGACCTCGGCCTCGTCCTCACTCCCCTCGAGGAGGCCATCAAGGACGCGGAGAAGAGTCTCACCGATAAATGCTTCCTTCCTTGATACTCATAATAATTACTGTACCTATAGGAGTAGTATATTGTTTCCTTCATTTTGTTTTAAGACTCAATTTATACTTAGTAATTGAACC GTGCTAACGCTACGGTAATATTTAGTAATGCAAATTAAAC                                       ]
[+] EMBL AU029779             [                                                AGGAGGAGCGGCGCNNGCTCGTGACCGGCGGCAATGGTTTCATCGGATCCTGGATCGTGCGGATCCTTCTCGCACGCGGGTACG CGTGACCGCAACCTACCAGCCGGGCACGGACGCTGCGCACCTCCTCGCCCTCGACGACGAAAGGCTCCTCCTGCTCCCCGCCGACCTGCTTGATGCGGGCGCCATCTCCGCGGCGGCGGCAGCGGGCGGGGGCTGCCGGGCGGGCGTGCTGCACGTGGNCTCCCCGTGCACGCTGGCTTGACCCGCGGGATCCGNA GCCGAACTGGTGGAGCCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU172860             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTCTCCGGGAGGTACCTNTGCACCAACGGCATCTACCAGTTCAGCGACTTCGCACGGCTAGCTGCCAGGATNTGCCCCGNGTACGCCCACGCCATCCACCGCTTNGAGGAGGGGACTACACAACCGTGGCTCGTGCCGCGCGACGCCCGTGACGCAGCACGCCGGCTCCTGGACCTCGGCCTCGTCCTCACTCCCCTCGAGGAGGCCATCAAGGACGCGGANAANAGTCTCNCCGATAAATGCTTCCTTCCTTGATACTCATAATAATTACTGTACCTATAGGAGTAGTATATTGTTTCCTTCATTTTGTTTTAAGACTCAATTTATACTTAGTAATTGAACCGGTGCTAACGCTACGGTAATATTTAGTAATGCAAATTAAACTATTAAAGTTTAACATTNTTAAAAAAAAAAAAAAAAAAA]


>consensus_4906#0 ACCCTCTCGTCCGCGTGACATCTGGATCGCCGGCGGAATCGAGTATGGAGGAGGAGCGGC GCGTGCTCGTGACCGGCGGCAATGGTTTCATCGGATCCTGGATCGTGCGGATCCTTCTCG CACGCGGGTACGCCGTGACCGCAACCTACCAGCCGGGCACGGACGCTGCGCACCTCCTCG CCCTCGACGACGAAAGGCTCCTCCTGCTCCCCGCCGACCTGCTTGATGCGGGCGCCATCT CCGCGGCGGCGGCAGCGGGCGGGGGCTGCCGGGCGGGCGTGCTGCACGTGGCCTCCCCGT GCACGCTGGCTGACCCGCGGGATCCGCAGGCCGAACTGGTGGAGCCGGCGGTGCGGGGCA CGCTGCACGTGCTGGAGGCGGCGCGGGGCGCGGGAGCGCGGCGCGTGGTGGTGACGTCCT CCATCTCAGCCATGGTGCCCAACCCGGGGTTGGCGGCGGGAGAGCTCGTCGACGAGCGAA GCTGGACGGACATGGAATTCTGCAAGGCCCGGGGCAAGTGGTACCCGGTGTCCAAGACGC TGGCCGAGAGGGCGGCGTGGGAGTACGCGGCGCGGTGGCCCGGCTTCGAGTTGGCCACCA TCCTGCCGTCGACATGCCTCGGCCCGCTCCTGTAGCCCACCCTGAACGCCAGCTCTGTCG TGCTGCAGCGCCTCTTGCAGGGCTCCACGGACGACCAGGCGGACTACTGGCTCGGCGCCG TCCACGTCCGCGACGTCGCCGCCGCCCACCTCCTGCTGCTCGAGGCTCCCACCGTCTCCG GGAGGTACCTCTGCACCAACGGCATCTACCAGTTCAGCGACTTCGCACGGCTAGCTGCCA GGATCTGCCCCGCGTACGCCCACGCCATCCACCGCTTCGAGGAGGGGACTACACAACCGT GGCTCGTGCCGCGCGACGCCCGTGACGCAGCACGCCGGCTCCTCGACCTCGGCCTCGTCC TCACTCCCCTCGAGGAGGCCATCAAGGACGCGGAGAAGAGTCTCACCGATAAATGCTTCC TTCCTTGATACTCATAATAATTACTGTACCTATAGGAGTAGTATATTGTTTCCTTCATTT TGTTTTAAGACTCAATTTATACTTAGTAATTGAACCGTGCTAACGCTACGGTAATATTTA GTAATGCAAATTAAACTATTAAAGTTTAACATTNTTAAAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)