cluster # 491

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Oryza sativa
cluster # 491 cluster # 491 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_491#0 length = 206 sequences # 1

consensus_491#1 length = 197 sequences # 1

consensusID : consensus_491#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [TCCGGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGACGCTTCTTCATCGCGACACTACTACTAACGTGTACAACAAGAGTTATAGAAGAGTTATAGAAGACCGCGAAATCAACCATAATGTCAGTTATCAAAGTACAACAAGACCGATGATCTGATTAGTTAATAGTCAATATTCGAAGGTGT]

[+] EMBL AA751114             [TCCGGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGACGCTTCTTCATCGCGACACTACTACTAACGTGTACAACAAGAGTTATAGAAGAGTTATAGAAGACCGCGAAATCAACCATAATGTCAGTTATCAAAGTACAACAAGACCGATGATCTGATTAGTTAATAGTCAATATTCGAAGGTGT]




>consensus_491#0
TCCGGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGAC
GCTTCTTCATCGCGACACTACTACTAACGTGTACAACAAGAGTTATAGAAGAGTTATAGA
AGACCGCGAAATCAACCATAATGTCAGTTATCAAAGTACAACAAGACCGATGATCTGATT
AGTTAATAGTCAATATTCGAAGGTGT

consensusID : consensus_491#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 197
fasta sequence

                              [GGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGACGCTTCTTCATCGCGACACTACTACTANCGTACAACAAGAGTTATAGAAGACTCTGCGGAAATTCAACCATAATGTCAGTTATCAAAAGTACAACAAGACCGATGATCTAGTATGTTAATAGTCAATATCGAGAGGTGTTC]

[+] EMBL AA751120             [GGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGACGCTTCTTCATCGCGACACTACTACTANCGTACAACAAGAGTTATAGAAGACTCTGCGGAAATTCAACCATAATGTCAGTTATCAAAAGTACAACAAGACCGATGATCTAGTATGTTAATAGTCAATATCGAGAGGTGTTC]




>consensus_491#1
GGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGACGCT
TCTTCATCGCGACACTACTACTANCGTACAACAAGAGTTATAGAAGACTCTGCGGAAATT
CAACCATAATGTCAGTTATCAAAAGTACAACAAGACCGATGATCTAGTATGTTAATAGTC
AATATCGAGAGGTGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_491#0      TCCGGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGAC 60
consensus_491#1      ---GGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGAC 57
                        *********************************************************

consensus_491#0      GCTTCTTCATCGCGACACTACTACTAACGTGTACAACAAGAGTTATAGAAGAGTTATAGA 120
consensus_491#1      GCTTCTTCATCGCGACACTACTACTANCGT--ACAACAAGAGTTATAGAAGACTCTGCGG 115
                     ************************** ***  ******************** *    * 

consensus_491#0      AGACCGCGAAATCAACCATAATGTCAGTTATCAAA-GTACAACAAGACCGATGATCTGAT 179
consensus_491#1      A-------AATTCAACCATAATGTCAGTTATCAAAAGTACAACAAGACCGATGATCTAGT 168
                     *       ** ************************ *********************  *

consensus_491#0      TAGTTAATAGTCAATATTCGAAGGTGT-- 206
consensus_491#1      ATGTTAATAGTCAATATCGAGAGGTGTTC 197
                       ***************    ******