These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_491#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [TCCGGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGACGCTTCTTCATCGCGACACTACTACTAACGTGTACAACAAGAGTTATAGAAGAGTTATAGAAGACCGCGAAATCAACCATAATGTCAGTTATCAAAGTACAACAAGACCGATGATCTGATTAGTTAATAGTCAATATTCGAAGGTGT] [+] EMBL AA751114 [TCCGGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGACGCTTCTTCATCGCGACACTACTACTAACGTGTACAACAAGAGTTATAGAAGAGTTATAGAAGACCGCGAAATCAACCATAATGTCAGTTATCAAAGTACAACAAGACCGATGATCTGATTAGTTAATAGTCAATATTCGAAGGTGT] consensusID : consensus_491#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 197 fasta sequence [GGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGACGCTTCTTCATCGCGACACTACTACTANCGTACAACAAGAGTTATAGAAGACTCTGCGGAAATTCAACCATAATGTCAGTTATCAAAAGTACAACAAGACCGATGATCTAGTATGTTAATAGTCAATATCGAGAGGTGTTC] [+] EMBL AA751120 [GGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGACGCTTCTTCATCGCGACACTACTACTANCGTACAACAAGAGTTATAGAAGACTCTGCGGAAATTCAACCATAATGTCAGTTATCAAAAGTACAACAAGACCGATGATCTAGTATGTTAATAGTCAATATCGAGAGGTGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_491#0 TCCGGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGAC 60 consensus_491#1 ---GGGGAGTTCCTCCCGAGCAGCTCTGTATGTTCACCATACAGCTCTTACAGTAGAGAC 57 ********************************************************* consensus_491#0 GCTTCTTCATCGCGACACTACTACTAACGTGTACAACAAGAGTTATAGAAGAGTTATAGA 120 consensus_491#1 GCTTCTTCATCGCGACACTACTACTANCGT--ACAACAAGAGTTATAGAAGACTCTGCGG 115 ************************** *** ******************** * * consensus_491#0 AGACCGCGAAATCAACCATAATGTCAGTTATCAAA-GTACAACAAGACCGATGATCTGAT 179 consensus_491#1 A-------AATTCAACCATAATGTCAGTTATCAAAAGTACAACAAGACCGATGATCTAGT 168 * ** ************************ ********************* * consensus_491#0 TAGTTAATAGTCAATATTCGAAGGTGT-- 206 consensus_491#1 ATGTTAATAGTCAATATCGAGAGGTGTTC 197 *************** ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||