cluster # 4917

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Oryza sativa
cluster # 4917 cluster # 4917 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4917#0 length = 690 sequences # 2

consensus_4917#1 length = 634 sequences # 1

consensusID : consensus_4917#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 690
fasta sequence

                              [AGCCCCCCGGCGGCGGGGCTGGCGGCGGGGGAGGGGGCGCCACCGTTGCTCCACCAGAAGCTGTGCCTCTCCATCGACATGGAGAACCGGCTGATCTATGGGTACACTGAGATAAAAGTTCAAGCTGAAAATGATACTTTTGCTCTGCATGCTGACAACATGACGATTAGGAACATATTAGTGGATGGTCAAGCTGCTGAGTTTGAGTATTCTCCTCAGTGGAAAAATGCTGGTGATCAACAGAGTTGGTCTTCAGTATCATGTTCGAAGACTGCTGCTGATGCTGCATGCTCAGTATATATCTCTTCTCTAAATAGTGAAGCTGCACCTAATCTCATCATCTCGTCAGAGAGATCAAGCAAGGCAATAACTGAGCCACAGTACGAAGAAAATGGTGAAAACCACGAAGAAAATGGTGAAAAACATGAAGAAAATGGTGAAAAACAAAATGAAAATGGTGAAAAATGTGAAGAAAATGGTGGGAAACCTGCTCAAATATCT-GATGATCAAGCTGTTAAT-GGCTGCAACGGTTCTGCTGATAAGAAGGACAAAGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGG-AAGAGGAAACTGAGAA-GGACAATGAAAAAGAAAAGGAGGACAAGGAAGAGGAAACTAAGAAGGACAATGAAAAAGAAAAGGAGCAGCTAATG]

[+] EMBL CB633962             [AGCCCCCCGGCGGCGGGGCTGGCGGCGGGGGAGGGGGCGCCACCGTTGCTCCACCAGAAGCTGTGCCTCTCCATCGACATGGAGAACCGGCTGATCTATGGGTACACTGAGATAAAAGTTCAAGCTGAAAATGATACTTTTGCTCTGCATGCTGACAACATGACGATTAGGAACATATTAGTGGATGGTCAAGCTGCTGAGTTTGAGTATTCTCCTCAGTGGAAAAATGCTGGTGATCAACAGAGTTGGTCTTCAGTATCATGTTCGAAGACTGCTGCTGATGCTGCATGCTCAGTATATATCTCTTCTCTAAATAGTGAAGCTGCACCTAATCTCATCATCTCGTCAGAGAGATCAAGCAAGGCAATAACTGAGCCACAGTACGAAGAAAATGGTGAAAACCACGAAGAAAATGGTGAAAAACATGAAGAAAATGGTGAAAAACAAAATGAAAATGGTGAAAAATGTGAAGAAAATGGTGGGAAACCTGCTCAAATATCT GATGATCAAGCTGTTAAT GGCTGCAACGGTTCTGCTGATAAGAAGGACAAAGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGG AAGAGGAAACTGAGAA GGACAATGAAAAAGAAAAGGAGGACAAGGAAGAGGAAACTAAGAAGGACAATGAAAAAGAAAAGGAGCAGCTAATG]
[+] EMBL AU056944             [                                                                                                                                                                                   AGTGGATGGTCAAGCTGCTGAGTTTGAGTATTCTCCTCAGTGGAAAAATGCTGGTGATCAACAGAGTTGGTCTTCAGTATCATGTTCGAAGACTGCTGCTGATGCTGCATGCTCAGTATATATCTCTTCTCTAAATAGTGAAGCTGCACCTAATCTCATCATCTCGTCAGAGAGATCAAGCAAGGCAATAACTGAGCCACAGTACGAAGAAAATGGTGAAAACCACGAAGAAAATGGTGAAAAACATGAAGAAAATGGTGAAAAACAAAATGAAAATGGTGAAAAATGTGAAGAAAATGGTGGGAAACCTGCTCAAATATCTGGATGATCAAGCTGTTAATGGGCTGCAACGGTTCTGCTGATAAGAAGGACAAAGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGGAAAGAGGAAACTGAGAAGGGACAAaan                                                                   ]




>consensus_4917#0
AGCCCCCCGGCGGCGGGGCTGGCGGCGGGGGAGGGGGCGCCACCGTTGCTCCACCAGAAG
CTGTGCCTCTCCATCGACATGGAGAACCGGCTGATCTATGGGTACACTGAGATAAAAGTT
CAAGCTGAAAATGATACTTTTGCTCTGCATGCTGACAACATGACGATTAGGAACATATTA
GTGGATGGTCAAGCTGCTGAGTTTGAGTATTCTCCTCAGTGGAAAAATGCTGGTGATCAA
CAGAGTTGGTCTTCAGTATCATGTTCGAAGACTGCTGCTGATGCTGCATGCTCAGTATAT
ATCTCTTCTCTAAATAGTGAAGCTGCACCTAATCTCATCATCTCGTCAGAGAGATCAAGC
AAGGCAATAACTGAGCCACAGTACGAAGAAAATGGTGAAAACCACGAAGAAAATGGTGAA
AAACATGAAGAAAATGGTGAAAAACAAAATGAAAATGGTGAAAAATGTGAAGAAAATGGT
GGGAAACCTGCTCAAATATCTGATGATCAAGCTGTTAATGGCTGCAACGGTTCTGCTGAT
AAGAAGGACAAAGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGGAA
GAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGGAAGAGGAAACTAAGAAG
GACAATGAAAAAGAAAAGGAGCAGCTAATG

consensusID : consensus_4917#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [CGCGATGACGTGGCGCGCCTCGACACCACCACCTCACCTCTGAAGCCCCCCACCTCACTTCCGACCGCCTTTGGTCCCCTTCTAGAAGCTTCCAAACCCTAGAGGAGGAGGAGGAGGAGGGGTTTCGGTATGGCGAAGGCGAGGAAGCAGAAGGGCGAAGAGCAGAAGCCCGACGGCGGCGGGGCTGGCGGCGGGGGAGGGGGCTCCACCGTGCTCCACCAGAAGCTGTGCCTCTCCATCGACATGGAGAACCGGCTGATCTATGGGTGAGGCCGCGCCCCCGCTTTGCTCATGCTCGTTGCCCTACTGCGTGCCCACATTAGCTGCCTTCGTTGGGTGGTAGATTAGGTTGGTCTGGGGGGATGGTTCGAGGCGTGCGGATTACGGTCCGGGGGCTCGTGTCTGGGAGTCTGACTTGCTTCGGCTAAATTGTACCACGAATCGAGAGTTGCTAGAATCCAGTACTTGTGCGTTTCGCGGGTCTCACCCGTGAGTGCTATTCGTTCCTCCGAACTCGCTGCCTGGCCTCCCGAATTAACTTTTTTGGTACTACGTCCCACGGTTTACATGCTCAAACAACACTCTGTTGAATTCCGGCCACACCCCCCCCCACGCCCCCACTGCTCTCTGGCGA]

[+] EMBL CA753579             [CGCGATGACGTGGCGCGCCTCGACACCACCACCTCACCTCTGAAGCCCCCCACCTCACTTCCGACCGCCTTTGGTCCCCTTCTAGAAGCTTCCAAACCCTAGAGGAGGAGGAGGAGGAGGGGTTTCGGTATGGCGAAGGCGAGGAAGCAGAAGGGCGAAGAGCAGAAGCCCGACGGCGGCGGGGCTGGCGGCGGGGGAGGGGGCTCCACCGTGCTCCACCAGAAGCTGTGCCTCTCCATCGACATGGAGAACCGGCTGATCTATGGGTGAGGCCGCGCCCCCGCTTTGCTCATGCTCGTTGCCCTACTGCGTGCCCACATTAGCTGCCTTCGTTGGGTGGTAGATTAGGTTGGTCTGGGGGGATGGTTCGAGGCGTGCGGATTACGGTCCGGGGGCTCGTGTCTGGGAGTCTGACTTGCTTCGGCTAAATTGTACCACGAATCGAGAGTTGCTAGAATCCAGTACTTGTGCGTTTCGCGGGTCTCACCCGTGAGTGCTATTCGTTCCTCCGAACTCGCTGCCTGGCCTCCCGAATTAACTTTTTTGGTACTACGTCCCACGGTTTACATGCTCAAACAACACTCTGTTGAATTCCGGCCACACCCCCCCCCACGCCCCCACTGCTCTCTGGCGA]




>consensus_4917#1
CGCGATGACGTGGCGCGCCTCGACACCACCACCTCACCTCTGAAGCCCCCCACCTCACTT
CCGACCGCCTTTGGTCCCCTTCTAGAAGCTTCCAAACCCTAGAGGAGGAGGAGGAGGAGG
GGTTTCGGTATGGCGAAGGCGAGGAAGCAGAAGGGCGAAGAGCAGAAGCCCGACGGCGGC
GGGGCTGGCGGCGGGGGAGGGGGCTCCACCGTGCTCCACCAGAAGCTGTGCCTCTCCATC
GACATGGAGAACCGGCTGATCTATGGGTGAGGCCGCGCCCCCGCTTTGCTCATGCTCGTT
GCCCTACTGCGTGCCCACATTAGCTGCCTTCGTTGGGTGGTAGATTAGGTTGGTCTGGGG
GGATGGTTCGAGGCGTGCGGATTACGGTCCGGGGGCTCGTGTCTGGGAGTCTGACTTGCT
TCGGCTAAATTGTACCACGAATCGAGAGTTGCTAGAATCCAGTACTTGTGCGTTTCGCGG
GTCTCACCCGTGAGTGCTATTCGTTCCTCCGAACTCGCTGCCTGGCCTCCCGAATTAACT
TTTTTGGTACTACGTCCCACGGTTTACATGCTCAAACAACACTCTGTTGAATTCCGGCCA
CACCCCCCCCCACGCCCCCACTGCTCTCTGGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4917#0      AGCCCCCCGGCGGCGGGGCTGGCGGCGGGGGAGGGGGCGCCACCGTTGCTCCACCAGAAG 60
consensus_4917#1      --------------CGCGATGACGTGGCGCGCCTCGACACCACCACCTCACC-TCTGAAG 45
                                     * * ** **  * * *    * * *****    * **  * ****

consensus_4917#0      CTGTGCCTCTCCATCGACATGGAGAACCGGCTGATCTATGGGTACACTGAGATAAAAGTT 120
consensus_4917#1      CCCC-CCACCTCACTTCCGACCGCCTTTGGTCCCCTTCTAGAAGCTTCCAAACCCTAGAG 104
                      *    ** *  **    *          **      * * *   *    * *    **  

consensus_4917#0      CAAGCTGAAAATGATACTTTTGCTCTGCATGCTGACAACATGACGATTAGGAACATATTA 180
consensus_4917#1      GAGGAGGAGGAGGAGGGGTTT---CGGTATGGCGAAGGCGAGGAAGCAGAAGGGCGAAGA 161
                       * *  **  * **    ***   * * ***  **   *  *              *  *

consensus_4917#0      GTGGATGGTCAA--GCTGCTGAGTTTGAGTATTCTCCTCAGTGGAAAAATGCTGGTGATC 238
consensus_4917#1      GCAGAAGCCCGACGGCGGCGGGGCTGGCGG-----CGGGGGAGGGGGCTCCACCGTGCTC 216
                      *  ** *  * *  ** ** * * * * *      *    * **          *** **

consensus_4917#0      AAC--AGAGTTGGTCTTCAGTATCATGTTCGAAGACTGCTGCTGATGCTGCATGCTCAGT 296
consensus_4917#1      CACCAGAAGCTGTGCCTCTCCATCGACATGGAGAACCG--GCTGAT-CTATGGG-TGAGG 272
                       **    ** **  * **   ***    * **  ** *  ****** **    * * ** 

consensus_4917#0      ATATATCTCTTCTCTAAATAGTGAAGCTGCACCTAATCTCATCATCTCGTCAGAGAGATC 356
consensus_4917#1      CCGCGCCCCCGCTTTGCTCATGCTCGTTGC--CCTACTGCGTGCCCACATTAGCT-GCCT 329
                            * *  ** *    *     * ***  *  *   * *   * * * **   *   

consensus_4917#0      AAGCAAGGCAATAACTGAGCCACAGTACGAAGAAAATGGTGAAAACCACGAAGAAAATGG 416
consensus_4917#1      TCGTTGGGTGGTAGATTAG--GTTGGTCTGGGGGGATGGTTCGAGGCGTGCGGATTACGG 387
                        *   **   **  * **     *  *   *   *****   *  *  *  **  * **

consensus_4917#0      TGAAAAACATGAAGAAAATGGTGAAAAACAAAATGAAAATGGTGAAAAATGTGAAGAAAA 476
consensus_4917#1      T------CCGGGGGCTCGTGTCTGGGAGTCTGACTTGCTTCGGCTAAATTGTACCACGAA 441
                      *      *  *  *    **      *     *      * *   *** ***      **

consensus_4917#0      TGGTGGGAAACCTGC-TCAAATATCTGATGATCAAGCTGTTAATGGCTGCAACGGTTCTG 535
consensus_4917#1      TCGAGAGTTGCTAGAATCCAGTACTTGTGCGTTTCGCGGGTCTCACCCGTGA--GTGCTA 499
                      * * * *   *  *  ** * **  **    *   ** * *     * *  *  ** ** 

consensus_4917#0      CTGATAAGAAGGACAAAGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACA 595
consensus_4917#1      TTCGTTCCTCCGAACTCGCTGCCTGGCCTCCCGAATTAACTTTTTTGGTACTACGTCCCA 559
                       *  *      **    *  *      **    *    * *      * *        **

consensus_4917#0      AGGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGGAAGAGGAAACTA 655
consensus_4917#1      CGGTTTACATGCTCAAACAACACTCTGTTGAATTCCGGCCACACCCCCCCCCACGCCCCC 619
                       **   *        *  *  **  **   **     *    **             *  

consensus_4917#0      AGAAGGACAATGAAAAAGAAAAGGAGCAGCTAATG 690
consensus_4917#1      ACT-GCTCTCTGGCGA------------------- 634
                      *   *  *  **   *