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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1578 fasta sequence
[GGCCATGTCATTTGGATCCAGATATCCTGTCGACGGAGCATCTATTGCCCCAGCTGCCAAAGTGGAAAAATCGTTGGGTAAATGGATACAACCACAGGAATGAACCTTGTCGGCGTGCAATCCAGGTGTATGATTTGGATGTATCGTCCCCCCATGATGAACCAATGGAGATCTACGGTATATTTGCATTTAGAGATGTACGAAACAACCAACAACGTAATCATGTCTTTCAATACTCGAGGGACAAACCATATAAGCTTCGGCCGGTGAGAGATTTCATGACTAAGTTTGTTTTGTTTATACCTTTTGTCTTAAAAGGGTCCCCTCCTTTTCTGTAGTTGTGCTCTTTAAACTTTGACATAAATCTATCTCCTTTTTGAAATAACTGACATTGGGAATTATTCATTTTTTAACTTTGTCCACTTGTCGCAAAAAGAAAAAAAAAAGTACACCATATTTTCGTAGTGTATGGCATCTTAAATATATACAAACGTGAAGCTCTCATTCATCAAACTCTAATCATTTAAGAGTAATTTGCGGTCAGAGTCAAAATAGTAATAGACACCAACAGTTATATTCATAAATGGAGGGATTAGTGGTTAAAACACCAATATATTATCTCTGGGACAAGTGTTTTATGTACCAGATGATTAGGCACTAGAATTAATACTTCATTTTATTCTTGTAACATTTGATGCACGTATGTCTAATAACTTTGATGTTTCTTTCACAAATTACTGCACAGGGCTCTAATAAGATACGGCCTCTAATTTGGCCACCTAGAGGCATATATGCAGTTGGGCCTATGTTGATCGAATACTACCTTGTCATTAAGGGTCAAGAAAGGAAAGACGATAAAGTGTTGATAGACGGGCATTCTATGTATGCCCCATCGTTCTATTCAGAACTTCATAGATACCGTTGGCACATCGACACTGGTCATTGTGGCACTGTTGCTCTGGAGATGGTTGCCCTTGATAAGGCAGTACTGGGCACATTGGAGCTTGAGGTACTCGATCTCGGAGAGAACTGTTTTGATTCACTTACAGTTGTTGCAGGTTACTGCGTACAGTGGGGACAATTCATGATATTTGACGGCAAGTTGA-GCGTTGGCAAGTTGCCCCCGGTCACATTATGCGTGGACGGTGATGGAATTCTGTTGCTTCGCTTCTTCACGTATAACAGCCCTTCAAATGATAAGAGCTTTAGTCATGGTGGTGGTG-TTAATGATCTCCTTGAGCATGTCA-CTGAGGAT-GTGTTGTTTGGGAGTATGTCGTTTGTACCACAGAACGAGGGGAGTTCTACTGCAAGTGGAGGCTGTTCTAGTTGTATGGACGGTCTTGAGATTTCGGCCACTGCCAAGTGGTCGCCATTATTTGAACAATCAGATTAGCTATGC-TTCCCCTTTCAAAAAGGAAGAAGATTAGCTATGCTTCGTATTATACACAAATGGT-TTGATCATCTCTGTATTTAGTAATGAAGGCCTAAAAGGACAAGAATGACCAA-GTTTGTAACAGACGATAATAGTGTATCTCTCCGCAATATGTATATTAATGTGGTGTTTTCTTTCAAAAAAAA]
[+] EMBL AK073997 [GGCCATGTCATTTGGATCCAGATATCCTGTCGACGGAGCATCTATTGCCCCAGCTGCCAAAGTGGAAAAATCGTTGGGTAAATGGATACAACCACAGGAATGAACCTTGTCGGCGTGCAATCCAGGTGTATGATTTGGATGTATCGTCCCCCCATGATGAACCAATGGAGATCTACGGTATATTTGCATTTAGAGATGTACGAAACAACCAACAACGTAATCATGTCTTTCAATACTCGAGGGACAAACCATATAAGCTTCGGCCGGTGAGAGATTTCATGACTAAGTTTGTTTTGTTTATACCTTTTGTCTTAAAAGGGTCCCCTCCTTTTCTGTAGTTGTGCTCTTTAAACTTTGACATAAATCTATCTCCTTTTTGAAATAACTGACATTGGGAATTATTCATTTTTTAACTTTGTCCACTTGTCGCAAAAAGAAAAAAAAAAGTACACCATATTTTCGTAGTGTATGGCATCTTAAATATATACAAACGTGAAGCTCTCATTCATCAAACTCTAATCATTTAAGAGTAATTTGCGGTCAGAGTCAAAATAGTAATAGACACCAACAGTTATATTCATAAATGGAGGGATTAGTGGTTAAAACACCAATATATTATCTCTGGGACAAGTGTTTTATGTACCAGATGATTAGGCACTAGAATTAATACTTCATTTTATTCTTGTAACATTTGATGCACGTATGTCTAATAACTTTGATGTTTCTTTCACAAATTACTGCACAGGGCTCTAATAAGATACGGCCTCTAATTTGGCCACCTAGAGGCATATATGCAGTTGGGCCTATGTTGATCGAATACTACCTTGTCATTAAGGGTCAAGAAAGGAAAGACGATAAAGTGTTGATAGACGGGCATTCTATGTATGCCCCATCGTTCTATTCAGAACTTCATAGATACCGTTGGCACATCGACACTGGTCATTGTGGCACTGTTGCTCTGGAGATGGTTGCCCTTGATAAGGCAGTACTGGGCACATTGGAGCTTGAGGTACTCGATCTCGGAGAGAACTGTTTTGATTCACTTACAGTTGTTGCAGGTTACTGCGTACAGTGGGGACAATTCATGATATTTGACGGCAAGTTGA GCGTTGGCAAGTTGCCCCCGGTCACATTATGCGTGGACGGTGATGGAATTCTGTTGCTTCGCTTCTTCACGTATAACAGCCCTTCAAATGATAAGAGCTTTAGTCATGGTGGTGGTG TTAATGATCTCCTTGAGCATGTCA CTGAGGAT GTGTTGTTTGGGAGTATGTCGTTTGTACCACAGAACGAGGGGAGTTCTACTGCAAGTGGAGGCTGTTCTAGTTGTATGGACGGTCTTGAGATTTCGGCCACTGCCAAGTGGTCGCCATTATTTGAACAATCAGATTAGCTATGC TTCCCCTTTCAAAAAGGAAGAAGATTAGCTATGCTTCGTATTATACACAAATGGT TTGATCATCTCTGTATTTAGTAATGAAGGCCTAAAAGGACAAGAATGACCAA GTTTGTAACAGACGATAATAGTGTATCTCTCCGCAATATGTATATTAATGTGGTGTTTTCTTT ]
[+] EMBL BI806856 [ acATTCATGATATTTGACGGCAAGTTGACGCGTTGGCAAGTTGCCCCCGGTCACATTATGCGTGGACGGTGATGGAATTCTGTTGCTTCGCTTCTTCACGTATAACAGCCCTTCAAATGATAAGAGCTTTAGTCATGGTGGTGGTGTTTAATGATCTCCTTGAGCATGTCATCTGAGGATCGTGTTGTTTGGGAGTATGTCGTTTGTACCACAGAACGAGGGGAGTTCTACTGCAAGTGGAGGCTGTTCTAGTTGTATGGACGGTCTTGAGATTTCGGCCNCTNCCAAGTGGTCGCCATTATTTGAACAATCAGATTAGCTATGCATTCCCCTTTCAAAAAGGAAGAAGATTAGCTATGCTTCGTATTATACACAAATGGTCTTGATCATCTCTGTATTTAGTAATGAAGGCCTAAAAGGACAAGAATGACCAACGTTTGTAACAGACGATAATAGTGTATCTCTCCGC ATATGTATATTAATGTGGTGTTTTCTTNCAAAAAAAA]
consensusID : consensus_4918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence
[GGCCATGTCATTTGGATCCAGATATCCTGTCGACGGAGCATCTATTGCCCCAGCTGCCAAAGTGGAAAAATCGTTGGGTAAATGGATACAACCACAGGAATGAACCTTGTCGGCGTGCAATCCAGGTGTATGATTTGAATGTATCGTCCCCCCATGATGAACCAATGGAGATCTACGGTATATTTGCATTTAGAGATGTACGAAACAACCAACAACGTAATCATGTCTTTCAATACTCCGAGGGGACAAACCATATAAGCTTCGGCCGGGGCTCTAATAAGATACGGCCTCTAATTTGGGCCACCTAGAGGCATATATGCAGTTGGGCCTATGTTGATCCGATACTAC]
[+] EMBL C72962 [GGCCATGTCATTTGGATCCAGATATCCTGTCGACGGAGCATCTATTGCCCCAGCTGCCAAAGTGGAAAAATCGTTGGGTAAATGGATACAACCACAGGAATGAACCTTGTCGGCGTGCAATCCAGGTGTATGATTTGAATGTATCGTCCCCCCATGATGAACCAATGGAGATCTACGGTATATTTGCATTTAGAGATGTACGAAACAACCAACAACGTAATCATGTCTTTCAATACTCCGAGGGGACAAACCATATAAGCTTCGGCCGGGGCTCTAATAAGATACGGCCTCTAATTTGGGCCACCTAGAGGCATATATGCAGTTGGGCCTATGTTGATCCGATACTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4918#0 GGCCATGTCATTTGGATCCAGATATCCTGTCGACGGAGCATCTATTGCCCCAGCTGCCAA 60
consensus_4918#1 GGCCATGTCATTTGGATCCAGATATCCTGTCGACGGAGCATCTATTGCCCCAGCTGCCAA 60
************************************************************
consensus_4918#0 AGTGGAAAAATCGTTGGGTAAATGGATACAACCACAGGAATGAACCTTGTCGGCGTGCAA 120
consensus_4918#1 AGTGGAAAAATCGTTGGGTAAATGGATACAACCACAGGAATGAACCTTGTCGGCGTGCAA 120
************************************************************
consensus_4918#0 TCCAGGTGTATGATTTGGATGTATCGTCCCCCCATGATGAACCAATGGAGATCTACGGTA 180
consensus_4918#1 TCCAGGTGTATGATTTGAATGTATCGTCCCCCCATGATGAACCAATGGAGATCTACGGTA 180
***************** ******************************************
consensus_4918#0 TATTTGCATTTAGAGATGTACGAAACAACCAACAACGTAATCATGTCTTTCAATACTC-- 238
consensus_4918#1 TATTTGCATTTAGAGATGTACGAAACAACCAACAACGTAATCATGTCTTTCAATACTCCG 240
**********************************************************
consensus_4918#0 GAGGGACAAACCATATAAGCTTCGGCCGGTGAGAGATTTCATGACTAAGTTTGTTTTGTT 298
consensus_4918#1 AGGGGACAAACCATATAAGCTTCGGCCG----GGGCTCTAATAAGATACGGCCTCTAATT 296
************************** * * * * ** * * * * **
consensus_4918#0 TATACCTTTTGTCTTAAAAGGGTCCCCTCCTTTTCTGTAGTTGTGCTCTTTAAACTTTGA 358
consensus_4918#1 TGGGCCACCT------AGAGG--------CATATATGCAGTTGGGCCTATGTTGATCCGA 342
* ** * * *** * * * ** ***** ** * * **
consensus_4918#0 CATAAATCTATCTCCTTTTTGAAATAACTGACATTGGGAATTATTCATTTTTTAACTTTG 418
consensus_4918#1 TACTAC------------------------------------------------------ 348
* *
consensus_4918#0 TCCACTTGTCGCAAAAAGAAAAAAAAAAGTACACCATATTTTCGTAGTGTATGGCATCTT 478
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 AAATATATACAAACGTGAAGCTCTCATTCATCAAACTCTAATCATTTAAGAGTAATTTGC 538
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 GGTCAGAGTCAAAATAGTAATAGACACCAACAGTTATATTCATAAATGGAGGGATTAGTG 598
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 GTTAAAACACCAATATATTATCTCTGGGACAAGTGTTTTATGTACCAGATGATTAGGCAC 658
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 TAGAATTAATACTTCATTTTATTCTTGTAACATTTGATGCACGTATGTCTAATAACTTTG 718
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 ATGTTTCTTTCACAAATTACTGCACAGGGCTCTAATAAGATACGGCCTCTAATTTGGCCA 778
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 CCTAGAGGCATATATGCAGTTGGGCCTATGTTGATCGAATACTACCTTGTCATTAAGGGT 838
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 CAAGAAAGGAAAGACGATAAAGTGTTGATAGACGGGCATTCTATGTATGCCCCATCGTTC 898
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 TATTCAGAACTTCATAGATACCGTTGGCACATCGACACTGGTCATTGTGGCACTGTTGCT 958
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 CTGGAGATGGTTGCCCTTGATAAGGCAGTACTGGGCACATTGGAGCTTGAGGTACTCGAT 1018
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 CTCGGAGAGAACTGTTTTGATTCACTTACAGTTGTTGCAGGTTACTGCGTACAGTGGGGA 1078
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 CAATTCATGATATTTGACGGCAAGTTGAGCGTTGGCAAGTTGCCCCCGGTCACATTATGC 1138
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 GTGGACGGTGATGGAATTCTGTTGCTTCGCTTCTTCACGTATAACAGCCCTTCAAATGAT 1198
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 AAGAGCTTTAGTCATGGTGGTGGTGTTAATGATCTCCTTGAGCATGTCACTGAGGATGTG 1258
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 TTGTTTGGGAGTATGTCGTTTGTACCACAGAACGAGGGGAGTTCTACTGCAAGTGGAGGC 1318
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 TGTTCTAGTTGTATGGACGGTCTTGAGATTTCGGCCACTGCCAAGTGGTCGCCATTATTT 1378
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 GAACAATCAGATTAGCTATGCTTCCCCTTTCAAAAAGGAAGAAGATTAGCTATGCTTCGT 1438
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 ATTATACACAAATGGTTTGATCATCTCTGTATTTAGTAATGAAGGCCTAAAAGGACAAGA 1498
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 ATGACCAAGTTTGTAACAGACGATAATAGTGTATCTCTCCGCAATATGTATATTAATGTG 1558
consensus_4918#1 ------------------------------------------------------------
consensus_4918#0 GTGTTTTCTTTCAAAAAAAA 1578
consensus_4918#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||