Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4921 cluster # 4921       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4921#0 length = 674 sequences # 2  
consensus_4921#1 length = 575 sequences # 1  

consensusID : consensus_4921#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 674
fasta sequence
                              [TTTTTTTTTTTTTTACCAAATGTTTTGGGTCGAATCGCGTTGGAAAATGCCTCACATACAACACAAGCACACAACAAAATGGTCCCAATCTTTGGTAATTTTCCAAAGTCAATCCTACCATAAATATACACCAAATAAAATCTACAACATTCAACCAAATATAATATGCATGCAATACATATAAATCTCTTAAAAGGAGTGATACTTCAAACATGGTAATAATAATTTGAATCAGTCAGATCCTAATTCATGGCAGATAACTTCATGCTCCCCTGCCAGCCAATAGCGTACAGTTGACTCGCATTGCTCTCTCTCTCGATTGATAAAATTTGGGGCCTTCACCATTAATTGGATGATTTTTTAAAAGGCATCCATTGAGAGGAGATGACAGTCACATTCTTGACTGATTCCATTAACTAATACACAA-CTGATGTGCCTATTCAGCCTTCATAACAT-CGCGTAGTTGCAAGTGCACAAAATTTTAGTAGTGG-AGAGTTGCTAACCTTGCATAAGAAAGGGCTTCTCAGCAACCTGAAATCAAGATCACTATGGGGCATTCTCCAACTTCTTGGAGGATCATCCATCTGGTAGCCTTCCTGATCATTGTTCTTGACCACGCTCTCATAATCTCAGCAGATACGGATCCACAAGATAGGAAGGGTTTTAGTCTCATT]

[+] EMBL CA760917             [TTTTTTTTTTTTTTACCAAATGTTTTGGGTCGAATCGCGTTGGAAAATGCCTCACATACAACACAAGCACACAACAAAATGGTCCCAATCTTTGGTAATTTTCCAAAGTCAATCCTACCATAAATATACACCAAATAAAATCTACAACATTCAACCAAATATAATATGCATGCAATACATATAAATCTCTTAAAAGGAGTGATACTTCAAACATGGTAATAATAATTTGAATCAGTCAGATCCTAATTCATGGCAGATAACTTCATGCTCCCCTGCCAGCCAATAGCGTACAGTTGACTCGCATTGCTCTCTCTCTCGATTGATAAAATTTGGGGCCTTCACCATTAATTGGATGATTTTTTAAAAGGCATCCATTGAGAGGAGATGACAGTCACATTCTTGACTGATTCCATTAACTAATACACAA CTGATGTGCCTATTCAGCCTTCATAACAT CGCGTAGTTGCAAGTGCACAAAATTTTAGTAGTGG AGAGTTGCTAACCTTGCATAAGAAAGGGCTTCTCAGCAACCTGAAATCAAGATCACTATGGGGCATTCTCCAACTTCTTGGAGGATCATCCATCTGGTAGCCTTCCTGATCATTGTTCTTGACCACGCTCTCATAATCTCAGCAGATACGGATCCACAAGATAGGAAGGGTTTTAGTCTCATT]
[+] EMBL CF310101             [                                   ttttTTGGAAAATGCCTCACATACAACACAAGCACACAACAAAATGGTCCCAATCTTTGGTAATTTTCCAAAGTCAATCCTACCATAAATATACACCAAATAAAATCTACAACATTCAACCAAATATAATATGCATGCAATACATATAAATCTCTTAAAAGGAGTGATACTTCAAACATGGTAATAATAATTTGAATCAGTCAGATCCTAATTCATGGCAGATAACTTCATGCTCCCCTGCCAGCCAATAGCGTACAGTTGACTCGCATTGCTCTCTCTCTCGCTTGATAAAATTTGGGGCCTTCACCATTAATTGGATGATTTTTTAAAAGGCATCCATTGAGAGGAGATGACAGTCACATTCTTGACTGATTCCATTAACTAATACACAANCTGATGTGCCTATTCAGCCTTCATAACATACGCGTAGTTGCAAGTGCACAAAATTTTAGTAGTGGAAGAGTTGCTAACCTTGCATAAGAAAGGGCTTCTCAGCAACCTGAAATCAAGATCACTATGGGG                                                                                                                        ]


>consensus_4921#0 TTTTTTTTTTTTTTACCAAATGTTTTGGGTCGAATCGCGTTGGAAAATGCCTCACATACA ACACAAGCACACAACAAAATGGTCCCAATCTTTGGTAATTTTCCAAAGTCAATCCTACCA TAAATATACACCAAATAAAATCTACAACATTCAACCAAATATAATATGCATGCAATACAT ATAAATCTCTTAAAAGGAGTGATACTTCAAACATGGTAATAATAATTTGAATCAGTCAGA TCCTAATTCATGGCAGATAACTTCATGCTCCCCTGCCAGCCAATAGCGTACAGTTGACTC GCATTGCTCTCTCTCTCGATTGATAAAATTTGGGGCCTTCACCATTAATTGGATGATTTT TTAAAAGGCATCCATTGAGAGGAGATGACAGTCACATTCTTGACTGATTCCATTAACTAA TACACAACTGATGTGCCTATTCAGCCTTCATAACATCGCGTAGTTGCAAGTGCACAAAAT TTTAGTAGTGGAGAGTTGCTAACCTTGCATAAGAAAGGGCTTCTCAGCAACCTGAAATCA AGATCACTATGGGGCATTCTCCAACTTCTTGGAGGATCATCCATCTGGTAGCCTTCCTGA TCATTGTTCTTGACCACGCTCTCATAATCTCAGCAGATACGGATCCACAAGATAGGAAGG GTTTTAGTCTCATT



consensusID : consensus_4921#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence
                              [CATGTTTTCAGGTCTTGTTTATAGCACTGGAAAGCTTAGCACGAATTTGACAAGATAGTAGCACATACAGGTACTGTAATTCTGACAATGACTGTATGTCACCTGAAAGTGATCCGGACAATCCAAAACTTGACAGCCTTCTGCAAACCATCCGAGAAAAAAGAGAGAGAGAAAATCATTAGTTGAAACATAGAGGAAACAACATGTTGATTCCACAAAGTATAAGAAAGGGCAAAGGGGAGAAAGATCATGTTGATTTGGCTAAAATGGTTCTTACATTGAGGTGACACGATTCTGGGTGCAGTACACTCCTGGCCATTTTTCGCCGCATGGATCATTACCAACCCATTCTGATAGCTTGGACTTGGCGTTATCCCAGGAAGCTGCTATGCCATTTAGGGCAGAGGCTACAAAGCGATGAGAGTGAAGAAACATCATCATGAAACAAAATCTAGTTTTTTACAGCAAATTAACCAGAAACTGGAATGAGACTGAAACACTTACTATCTTGTGGGATCTGTATCTGCTGAGATTATGAGAAGCGTGGTCAAGAACAATGATCAGGAAGACTAACA]

[+] EMBL CF310100             [CATGTTTTCAGGTCTTGTTTATAGCACTGGAAAGCTTAGCACGAATTTGACAAGATAGTAGCACATACAGGTACTGTAATTCTGACAATGACTGTATGTCACCTGAAAGTGATCCGGACAATCCAAAACTTGACAGCCTTCTGCAAACCATCCGAGAAAAAAGAGAGAGAGAAAATCATTAGTTGAAACATAGAGGAAACAACATGTTGATTCCACAAAGTATAAGAAAGGGCAAAGGGGAGAAAGATCATGTTGATTTGGCTAAAATGGTTCTTACATTGAGGTGACACGATTCTGGGTGCAGTACACTCCTGGCCATTTTTCGCCGCATGGATCATTACCAACCCATTCTGATAGCTTGGACTTGGCGTTATCCCAGGAAGCTGCTATGCCATTTAGGGCAGAGGCTACAAAGCGATGAGAGTGAAGAAACATCATCATGAAACAAAATCTAGTTTTTTACAGCAAATTAACCAGAAACTGGAATGAGACTGAAACACTTACTATCTTGTGGGATCTGTATCTGCTGAGATTATGAGAAGCGTGGTCAAGAACAATGATCAGGAAGACTAACA]


>consensus_4921#1 CATGTTTTCAGGTCTTGTTTATAGCACTGGAAAGCTTAGCACGAATTTGACAAGATAGTA GCACATACAGGTACTGTAATTCTGACAATGACTGTATGTCACCTGAAAGTGATCCGGACA ATCCAAAACTTGACAGCCTTCTGCAAACCATCCGAGAAAAAAGAGAGAGAGAAAATCATT AGTTGAAACATAGAGGAAACAACATGTTGATTCCACAAAGTATAAGAAAGGGCAAAGGGG AGAAAGATCATGTTGATTTGGCTAAAATGGTTCTTACATTGAGGTGACACGATTCTGGGT GCAGTACACTCCTGGCCATTTTTCGCCGCATGGATCATTACCAACCCATTCTGATAGCTT GGACTTGGCGTTATCCCAGGAAGCTGCTATGCCATTTAGGGCAGAGGCTACAAAGCGATG AGAGTGAAGAAACATCATCATGAAACAAAATCTAGTTTTTTACAGCAAATTAACCAGAAA CTGGAATGAGACTGAAACACTTACTATCTTGTGGGATCTGTATCTGCTGAGATTATGAGA AGCGTGGTCAAGAACAATGATCAGGAAGACTAACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4921#0      TTTTTTTTTTTTTTACCAAATGTTTTGGGTCGAATCGCGTTGGAAAATGCCTCACATACA 60
consensus_4921#1      ------------------CATGTTTT----CAGGTCTTGTTTATAGCACTGGAAAGCTTA 38
                                         *******    *   **  ***   *        *     *

consensus_4921#0      ACACAAGCACACAACAAAATGGTCCCAATCTTTGGTAATTTTCCAAAGTCAATCCTACCA 120
consensus_4921#1      GCACGA--ATTTGACAAGATAGTAGCACATACAGGTACT--------GTAATTCTGACAA 88
                       *** *  *    **** ** **  **      **** *        ** * **  ** *

consensus_4921#0      TAAATATACACCAAATAAAATCTACAACATTCAACCAAATATAATATGCATGCAATACAT 180
consensus_4921#1      TGACTGTATGTCACCTGAAAGTGATCCGGACAATCCAAAACTTGACAGCCTTC--TGCAA 146
                      * * * **   **  * ***   *        * *****  *     ** * *  * ** 

consensus_4921#0      ATAAATCTCTTAAAAGGAGTGATACTTCAAACATGGTAATAATAATTTGAATCAGTCAG- 239
consensus_4921#1      ACCATCCGAGAAAAAAGAGAGAGA---GAAAATCATTAGTTGAAACATAGAGGAAACAAC 203
                      *  *  *    **** *** ** *    ***     ** *   **  *  *  *  **  

consensus_4921#0      ATCCTAATTC-ATGGCAGATAACTTCATGCTCCCCTGCCAGCCAATAGCGTACAGTTGAC 298
consensus_4921#1      ATGTTGATTCCACAAAGTATAAGAAAGGGCAAAGGGGAGAAA-GATCATGTTGATTTGGC 262
                      **  * **** *      ****      **      *  *    **   **  * *** *

consensus_4921#0      TCGCATTGCTCTCTCTCTCGATTGATAAAATTTGGGGCCTTCACCATTAATTGGATGATT 358
consensus_4921#1      TAAAATGGTTCTTACATTGAGGTGACACGATTCTGGG--TGCAGTACACTCCTGGCCATT 320
                      *   ** * ***  *  *    *** *  ***  ***  * **  *       *   ***

consensus_4921#0      TTTTAAAAGGCATCCATTGAGAGGAGATGACAGTCACATTCTTGACTGATTCCATTAACT 418
consensus_4921#1      TTTCGCC--GCATGGATCATTACCAACCCATTCTGATAGCTTGGACT--TGGCGTTATCC 376
                      ***      ****  **    *  *    *   * * *   * ****  *  * *** * 

consensus_4921#0      AATACACAACTGATGTGCCTATTCAGCCTTCATAACATCGCGTAGTTGCAAGTGCACAAA 478
consensus_4921#1      --CAGGAAGCTGCTATGCC-ATTTAGGGCAGAGGCTACAAAGCGAT-GAGAGTG-AAGAA 431
                         *   * *** * **** *** **     *    *    *   * *  **** *  **

consensus_4921#0      ATTTTAGTAGTGGAGAGTTGCTAACCTTGCATAAGAAAGGGCTTCTCAGCAACCTGAAAT 538
consensus_4921#1      ACATCATCATGAAACAAAATCTAGTTTTTTACAGCAAA----------TTAACCAGAAAC 481
                      *  * *  *    * *    ***   **  * *  ***            **** **** 

consensus_4921#0      CAAGATCACTATGGGGCATTCTCCAACTTCTTGGAGGATCATCCATCTGGTAGCCTTCCT 598
consensus_4921#1      TGGAATGAGACTGAAACACTTACTA---TCTTGTGGGATC-TGTATCTGCTGAGATTATG 537
                          ** *   **   ** *  * *   *****  ***** *  ***** *    **   

consensus_4921#0      G--ATCATTGTTCTTGACCACGCTCTCATAATCTCAGCAGATACGGATCCACAAGATAGG 656
consensus_4921#1      AGAAGCGTGGTCAAGAACAATGATCAGGAAGACT-AACA--------------------- 575
                         * * * **     ** * * **    *  ** * **                     

consensus_4921#0      AAGGGTTTTAGTCTCATT 674
consensus_4921#1      ------------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)