These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 283 fasta sequence [CGCGCGCGCGCCTCGCGCTCCTCTCTGCCAGATCCGGT-GTGCGGTGGACCGGAGGGGAT-GCAGC-GCAGGCGGAGGGGATGGCACGCGGGAGCGGATGGGAGGGCGGCGGCGGCGGCCGGCAATGCCCTCTCCTGCGCGGATATTTGTCATTTCTTTTTTTTTTAAGAAGAATTTGTGATTCATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTCATTGTATGGATCTGAGATGTATAATTTATGATGTATTTGATTTGTGGTAAAAAA] [+] EMBL BI812198 [CGCGCGCGCGCCTCGCGCTCCTCTCTGCCAGATCCGGT GTGCGGTGGACCGGAGGGGAT GCAGC GCAGGCGGAGGGGATGGCACGCGGGAGCGGATGGGAGGGCGGCGGCGGCGGCCGGCAATGCCCTCTCCTGCGCGGATATTTGTCATTTCTTTTTTTTTTAAGAAGAATTTGTGATTCATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTCATTGTATGGATCTGAGATGTATAATTTATGATGTATTTGATTTGTGGTAAAAAA] [+] EMBL BI812241 [ CCTCTCTGCCAGATCCGGTGGTGCGGTGGACCGGAGGGGATGGCAGCGGCAGGCGGAGGGGATGGCACGCGGGAGCGGATGGGAGGGCGGCGGCGGCGGCCGGCAATGCCCTCTCCTGCGCGGATATTTGTCATTTCTTTTTTTTTTAAGAAGAATTTGTGATTCATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTCATTGTATGGATCTGAGATGTATAATTTATGATGTATTTGATTTGTGGTAAAAAA] consensusID : consensus_4927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 171 fasta sequence [CCGGCCGCATGCCCTCTCCTGCTCGGTATTTGTCATTTCTTTTTTTTTTAAGAAGATTTGTGATTCATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTACATTAGTATGGTCAGAGATCGTATAATTTATAATGTATTTGATTTCGTCGGTCATTT] [-] EMBL AA750357 [CCGGCCGCATGCCCTCTCCTGCTCGGTATTTGTCATTTCTTTTTTTTTTAAGAAGATTTGTGATTCATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTACATTAGTATGGTCAGAGATCGTATAATTTATAATGTATTTGATTTCGTCGGTCATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4927#0 CGCGCGCGCGCCTCGCGCTCCTCTCTGCCAGATCCGGTGTGCGGTGGACCGGAGGGGATG 60 consensus_4927#1 ------------------------------------------------------------ consensus_4927#0 CAGCGCAGGCGGAGGGGATGGCACGCGGGAGCGGATGGGAGGGCGGCGGCGGCGGCCGGC 120 consensus_4927#1 ---------------------------------------------------CCGGCCG-- 7 ****** consensus_4927#0 AATGCCCTCTCCTGCGCGGATATTTGTCATTTCTTTTTTTTTTAAGAAGAATTTGTGATT 180 consensus_4927#1 CATGCCCTCTCCTGCTCGG-TATTTGTCATTTCTTTTTTTTTTAAGAAGA-TTTGTGATT 65 ************** *** ****************************** ********* consensus_4927#0 CATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATT-CATT-GTATGG 238 consensus_4927#1 CATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTACATTAGTATGG 125 ************************************************ **** ****** consensus_4927#0 ATCTGAGAT-GTATAATTTATGATGTATTTGATTTG--TGGTAAAAAA 283 consensus_4927#1 -TCAGAGATCGTATAATTTATAATGTATTTGATTTCGTCGGTCATTT- 171 ** ***** *********** ************* *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||