cluster # 4927

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Oryza sativa
cluster # 4927 cluster # 4927 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4927#0 length = 283 sequences # 2

consensus_4927#1 length = 171 sequences # 1

consensusID : consensus_4927#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 283
fasta sequence

                              [CGCGCGCGCGCCTCGCGCTCCTCTCTGCCAGATCCGGT-GTGCGGTGGACCGGAGGGGAT-GCAGC-GCAGGCGGAGGGGATGGCACGCGGGAGCGGATGGGAGGGCGGCGGCGGCGGCCGGCAATGCCCTCTCCTGCGCGGATATTTGTCATTTCTTTTTTTTTTAAGAAGAATTTGTGATTCATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTCATTGTATGGATCTGAGATGTATAATTTATGATGTATTTGATTTGTGGTAAAAAA]

[+] EMBL BI812198             [CGCGCGCGCGCCTCGCGCTCCTCTCTGCCAGATCCGGT GTGCGGTGGACCGGAGGGGAT GCAGC GCAGGCGGAGGGGATGGCACGCGGGAGCGGATGGGAGGGCGGCGGCGGCGGCCGGCAATGCCCTCTCCTGCGCGGATATTTGTCATTTCTTTTTTTTTTAAGAAGAATTTGTGATTCATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTCATTGTATGGATCTGAGATGTATAATTTATGATGTATTTGATTTGTGGTAAAAAA]
[+] EMBL BI812241             [                   CCTCTCTGCCAGATCCGGTGGTGCGGTGGACCGGAGGGGATGGCAGCGGCAGGCGGAGGGGATGGCACGCGGGAGCGGATGGGAGGGCGGCGGCGGCGGCCGGCAATGCCCTCTCCTGCGCGGATATTTGTCATTTCTTTTTTTTTTAAGAAGAATTTGTGATTCATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTCATTGTATGGATCTGAGATGTATAATTTATGATGTATTTGATTTGTGGTAAAAAA]




>consensus_4927#0
CGCGCGCGCGCCTCGCGCTCCTCTCTGCCAGATCCGGTGTGCGGTGGACCGGAGGGGATG
CAGCGCAGGCGGAGGGGATGGCACGCGGGAGCGGATGGGAGGGCGGCGGCGGCGGCCGGC
AATGCCCTCTCCTGCGCGGATATTTGTCATTTCTTTTTTTTTTAAGAAGAATTTGTGATT
CATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTCATTGTATGGAT
CTGAGATGTATAATTTATGATGTATTTGATTTGTGGTAAAAAA

consensusID : consensus_4927#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 171
fasta sequence

                              [CCGGCCGCATGCCCTCTCCTGCTCGGTATTTGTCATTTCTTTTTTTTTTAAGAAGATTTGTGATTCATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTACATTAGTATGGTCAGAGATCGTATAATTTATAATGTATTTGATTTCGTCGGTCATTT]

[-] EMBL AA750357             [CCGGCCGCATGCCCTCTCCTGCTCGGTATTTGTCATTTCTTTTTTTTTTAAGAAGATTTGTGATTCATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTACATTAGTATGGTCAGAGATCGTATAATTTATAATGTATTTGATTTCGTCGGTCATTT]




>consensus_4927#1
CCGGCCGCATGCCCTCTCCTGCTCGGTATTTGTCATTTCTTTTTTTTTTAAGAAGATTTG
TGATTCATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTACATTAG
TATGGTCAGAGATCGTATAATTTATAATGTATTTGATTTCGTCGGTCATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4927#0      CGCGCGCGCGCCTCGCGCTCCTCTCTGCCAGATCCGGTGTGCGGTGGACCGGAGGGGATG 60
consensus_4927#1      ------------------------------------------------------------
                                                                                  

consensus_4927#0      CAGCGCAGGCGGAGGGGATGGCACGCGGGAGCGGATGGGAGGGCGGCGGCGGCGGCCGGC 120
consensus_4927#1      ---------------------------------------------------CCGGCCG-- 7
                                                                          ******  

consensus_4927#0      AATGCCCTCTCCTGCGCGGATATTTGTCATTTCTTTTTTTTTTAAGAAGAATTTGTGATT 180
consensus_4927#1      CATGCCCTCTCCTGCTCGG-TATTTGTCATTTCTTTTTTTTTTAAGAAGA-TTTGTGATT 65
                       ************** *** ****************************** *********

consensus_4927#0      CATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATT-CATT-GTATGG 238
consensus_4927#1      CATTGTATGAATTGAGATGTATAGTTTCTTTTTTGAGAATCTGTGATTACATTAGTATGG 125
                      ************************************************ **** ******

consensus_4927#0      ATCTGAGAT-GTATAATTTATGATGTATTTGATTTG--TGGTAAAAAA 283
consensus_4927#1      -TCAGAGATCGTATAATTTATAATGTATTTGATTTCGTCGGTCATTT- 171
                       ** ***** *********** *************    *** *