These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 837 fasta sequence [TTTTTTGGTTTCACATCAAGTTTGATTTATAGCAAATTAATAAAATCATAATAGATTTACAACAAATGTCACACAAGAGCACCAATAATTAAGATAGAAACACAAAAGAAATACATATCCACCATCCAAATTGAATTCCACACATCCCAAATTTATGAAAAGCACGCGCGTGTAAACGCCGCAAATATAGACACCGCATTTACATGGGGTGCCTAGTTTTAGTGCTTGGGAGGGCATATCGCCGGCCGGAAGGCGAGAGGACCGGCGGCATAAACAACGTTATCGTAGCCCTGACCAGTCCATCGCTTACCCTCGTCACGGAGTGGCGCACCCTTGATGTCAGAGTAGTTGATGTTTGGGGGGGGTGGTTGCACTTGAAATCCGGCGACGCCTGAAGTCGTACGTGGCACGCCTTACTCGGATCACCCATGAAGAAGTCAGAGACTTTGGTCACGCCGAGCTCCGTCTGGAAGTAGCCGCTCTCGTCGGCGATGGCCCGCTTGCACTCCATGACACGATTCTTGGTGTCGTGGCAGGTAACGAACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATGCGTGTTCCGGTACGCGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAACTTGTCACTGTGGGCCGGCGGCGGCGGGGTGTACTGCTGCGGCGGCGGCGGCGATGGTGTGGTGTAGCCGTTGTTGGCAGTGGCGCCGGCGGCCAGGAGGGACACGAGGATCGCGAGAGGAAGGAAGGCAGCCATTGCTCGGAGTCGGAGCTAGCTTGGTGTTCAACTTAAGATGGTTTATCTTAACCTGAAGT] [+] EMBL CF291044 [TTTTTTGGTTTCACATCAAGTTTGATTTATAGCAAATTAATAAAATCATAATAGATTTACAACAAATGTCACACAAGAGCACCAATAATTAAGATAGAAACACAAAAGAAATACATATCCACCATCCAAATTGAATTCCACACATCCCAAATTTATGAAAAGCACGCGCGTGTAAACGCCGCAAATATAGACACCGCATTTACATGGGGTGCCTAGTTTTAGTGCTTGGGAGGGCATATCGCCGGCCGGAAGGCGAGAGGACCGGCGGCATAAACAACGTTATCGTAGCCCTGACCAGTCCATCGCTTACCCTCGTCACGGAGTGGCGCACCCTTGATGTCAGAGTAGTTGATGTTTGGGGGGGGTGGTTGCACTTGAAATCCGGCGACGCCTGAAGTCGTACGTGGCACGCCTTACTCGGATCACCCATGAAGAAGTCAGAGACTTTGGTCACGCCGAGCTCCGTCTGGAAGTAGCCGCTCTCGTCGGCGATGGCCCGCTTGCACTCCATGACACGATTCTTGGTGTCGTGGCAGGTAACGAACACCTCCGC ] [-] EMBL CF291045 [ ATCCGGCGACGCCTGAAGTCGTACGTGGCACGCCTTACTCGGATCACCCATGAAGAAGTCAGAGACTTTGGTCACGCCGAGCTCCGTCTGGAAGTAGCCGCTCTCGTCGGCGATGGCCCGCTTGCACTCCATGACACGATTCTTGGTGTCGTGGCAGGTAACGAACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATGCGTGTTCCGGTACGCGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAACTTGTCACTGTGGGCCGGCGGCGGCGGGGTGTACTGCTGCGGCGGCGGCGGCGATGGTGTGGTGTAGCCGTTGTTGGCAGTGGCGCCGGCGGCCAGGAGGGACACGAGGATCGCGAGAGGAAGGAAGGCAGCCATTGCTCGGAGTCGGAGCTAGCTTGGTGTTCAACTTAAGATGGTTTATCTTAACCTGAAGT] consensusID : consensus_4928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [GCATGCCTTGCTCGGATCACCCATAAAGAAGTCAGAGACTTTAGTCACGCCGAGCTCCGTCTGGAAGTAGCCGCTCTCGTCGGCGATAGCCCGCTTGTACTCCATGACACGATTCTTGGCGTCGTGGCAGGTAACAGACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATGCGTGTTNNCCGGTACACGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAACTTGTCACTGTGGGCCGGCGGCGGCGGGGTGTACTGCTGCTGCGGCGGCGGCGGCGGTGATGGTGTGGTGTAGCCATTGTTAGCAGTGGCGCCGGCGGCTAGGAGGGACACGAGGATCGCGAGAGGAAGCTGGAAGGCAGCCATTGCTCGGAGCTTGCTTGGTGCTCGATTGAAGATGGTTTATCTTAACCTGAAGTTTTGGTGTTTTCTACTC] [-] EMBL CF291360 [GCATGCCTTGCTCGGATCACCCATAAAGAAGTCAGAGACTTTAGTCACGCCGAGCTCCGTCTGGAAGTAGCCGCTCTCGTCGGCGATAGCCCGCTTGTACTCCATGACACGATTCTTGGCGTCGTGGCAGGTAACAGACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATGCGTGTTNNCCGGTACACGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAACTTGTCACTGTGGGCCGGCGGCGGCGGGGTGTACTGCTGCTGCGGCGGCGGCGGCGGTGATGGTGTGGTGTAGCCATTGTTAGCAGTGGCGCCGGCGGCTAGGAGGGACACGAGGATCGCGAGAGGAAGCTGGAAGGCAGCCATTGCTCGGAGCTTGCTTGGTGCTCGATTGAAGATGGTTTATCTTAACCTGAAGTTTTGGTGTTTTCTACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4928#0 TTTTTTGGTTTCACATCAAGTTTGATTTATAGCAAATTAATAAAATCATAATAGATTTAC 60 consensus_4928#1 ------------------------------------------------------------ consensus_4928#0 AACAAATGTCACACAAGAGCACCAATAATTAAGATAGAAACACAAAAGAAATACATATCC 120 consensus_4928#1 ------------------------------------------------------------ consensus_4928#0 ACCATCCAAATTGAATTCCACACATCCCAAATTTATGAAAAGCACGCGCGTGTAAACGCC 180 consensus_4928#1 ------------------------------------------------------------ consensus_4928#0 GCAAATATAGACACCGCATTTACATGGGGTGCCTAGTTTTAGTGCTTGGGAGGGCATATC 240 consensus_4928#1 ------------------------------------------------------------ consensus_4928#0 GCCGGCCGGAAGGCGAGAGGACCGGCGGCATAAACAACGTTATCGTAGCCCTGACCAGTC 300 consensus_4928#1 ------------------------------------------------------------ consensus_4928#0 CATCGCTTACCCTCGTCACGGAGTGGCGCACCCTTGATGTCAGAGTAGTTGATGTTTGGG 360 consensus_4928#1 ------------------------------------------------------------ consensus_4928#0 GGGGGTGGTTGCACTTGAAATCCGGCGACGCCTGAAGTCGTACGTGGCACGCCTTACTCG 420 consensus_4928#1 ----------------------------------------------GCATGCCTTGCTCG 14 *** ***** **** consensus_4928#0 GATCACCCATGAAGAAGTCAGAGACTTTGGTCACGCCGAGCTCCGTCTGGAAGTAGCCGC 480 consensus_4928#1 GATCACCCATAAAGAAGTCAGAGACTTTAGTCACGCCGAGCTCCGTCTGGAAGTAGCCGC 74 ********** ***************** ******************************* consensus_4928#0 TCTCGTCGGCGATGGCCCGCTTGCACTCCATGACACGATTCTTGGTGTCGTGGCAGGTAA 540 consensus_4928#1 TCTCGTCGGCGATAGCCCGCTTGTACTCCATGACACGATTCTTGGCGTCGTGGCAGGTAA 134 ************* ********* ********************* ************** consensus_4928#0 CGAACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATGCGTGTTCC--GGTA 598 consensus_4928#1 CAGACACCTCCGCCTTGGGCAGCGGCATCGCGCCGTTGAGGCTATGCGTGTTNNCCGGTA 194 * ************************************************* **** consensus_4928#0 CGCGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAACTTGTCACTGTGGGC 658 consensus_4928#1 CACGCAGCTCTGGCAGTACACCATGCCCTCCACCCTCACCAGCAACTTGTCACTGTGGGC 254 * ********************************************************** consensus_4928#0 CGGCGGCGGCGGGGTGTACTGCTGC------GGCGGCGGCGGCGATGGTGTGGTGTAGCC 712 consensus_4928#1 CGGCGGCGGCGGGGTGTACTGCTGCTGCGGCGGCGGCGGCGGTGATGGTGTGGTGTAGCC 314 ************************* *********** ***************** consensus_4928#0 GTTGTTGGCAGTGGCGCCGGCGGCCAGGAGGGACACGAGGATCGCGAGAGGAAG---GAA 769 consensus_4928#1 ATTGTTAGCAGTGGCGCCGGCGGCTAGGAGGGACACGAGGATCGCGAGAGGAAGCTGGAA 374 ***** ***************** ***************************** *** consensus_4928#0 GGCAGCCATTGCTCGGAGTCGGAGCTAGCTTGGTGTTCAACTTAAGATGGTTTATCTTAA 829 consensus_4928#1 GGCAGCCATTGCTCG------GAGCTTGCTTGGTGCTCGATTGAAGATGGTTTATCTTAA 428 *************** ***** ******** ** * * ***************** consensus_4928#0 CCTGAAGT----------------- 837 consensus_4928#1 CCTGAAGTTTTGGTGTTTTCTACTC 453 ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||