cluster # 493

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Oryza sativa
cluster # 493 cluster # 493 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_493#0 length = 883 sequences # 1

consensus_493#1 length = 681 sequences # 1

consensusID : consensus_493#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 883
fasta sequence

                              [GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTTCTTCTTCTTCACAGCAGCAGCTAACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGGAGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCCGCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACGAGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCCTGAGGATCGCGCAGGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCGAGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAGCGACTGGGTGATGAACAGCATGGCGAACGGCACCGACAGCTACGGCGTCACCACCGGGTTCGGCGCCACGTCGCACCGGCGGACCAAGGAGGGCGGCGCGCTGCAGCGGGAGCTCATCATGTTCCTCAACGCCGGCGCCTTCGGCACCGGCGCCGACGGCACGTCTTCCCGCGGTGCCAGCGCGCGGNATGCTCGTCGGATCACACCCTGTGCAGGCTCTCCGATCNGTTTAGATCTAAGGGGCGCAACTGTAAGCCAGTTAGCGGCTGCGTCGGGACAAACGGTGGAACTTTCTTTCTATTCGGGTTTACGCGGGAATCCTTGGGGCCCAGGGAGGACCCCAGGCTAAAATTATTGTGTTTTTTCTCAAGGAGAAGAGAGGGGGGCGCCGCCCCTTCGAACCATACCATAATGTTTTTTGTGGTGGTTGNTATTCGTTAAAATATCCTCCTCTCACACAATGTGAAGTATATATAGAAACCG]

[+] EMBL AW155576             [GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTTCTTCTTCTTCACAGCAGCAGCTAACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGGAGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCCGCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACGAGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCCTGAGGATCGCGCAGGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCGAGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAGCGACTGGGTGATGAACAGCATGGCGAACGGCACCGACAGCTACGGCGTCACCACCGGGTTCGGCGCCACGTCGCACCGGCGGACCAAGGAGGGCGGCGCGCTGCAGCGGGAGCTCATCATGTTCCTCAACGCCGGCGCCTTCGGCACCGGCGCCGACGGCACGTCTTCCCGCGGTGCCAGCGCGCGGNATGCTCGTCGGATCACACCCTGTGCAGGCTCTCCGATCNGTTTAGATCTAAGGGGCGCAACTGTAAGCCAGTTAGCGGCTGCGTCGGGACAAACGGTGGAACTTTCTTTCTATTCGGGTTTACGCGGGAATCCTTGGGGCCCAGGGAGGACCCCAGGCTAAAATTATTGTGTTTTTTCTCAAGGAGAAGAGAGGGGGGCGCCGCCCCTTCGAACCATACCATAATGTTTTTTGTGGTGGTTGNTATTCGTTAAAATATCCTCCTCTCACACAATGTGAAGTATATATAGAAACCG]




>consensus_493#0
GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTTCTTCTTCTTCACAGCAGCAGCTA
ACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGG
AGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCC
GCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACG
AGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCC
TGAGGATCGCGCAGGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCG
AGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAGCGACTGGGTGATGAACAGCA
TGGCGAACGGCACCGACAGCTACGGCGTCACCACCGGGTTCGGCGCCACGTCGCACCGGC
GGACCAAGGAGGGCGGCGCGCTGCAGCGGGAGCTCATCATGTTCCTCAACGCCGGCGCCT
TCGGCACCGGCGCCGACGGCACGTCTTCCCGCGGTGCCAGCGCGCGGNATGCTCGTCGGA
TCACACCCTGTGCAGGCTCTCCGATCNGTTTAGATCTAAGGGGCGCAACTGTAAGCCAGT
TAGCGGCTGCGTCGGGACAAACGGTGGAACTTTCTTTCTATTCGGGTTTACGCGGGAATC
CTTGGGGCCCAGGGAGGACCCCAGGCTAAAATTATTGTGTTTTTTCTCAAGGAGAAGAGA
GGGGGGCGCCGCCCCTTCGAACCATACCATAATGTTTTTTGTGGTGGTTGNTATTCGTTA
AAATATCCTCCTCTCACACAATGTGAAGTATATATAGAAACCG

consensusID : consensus_493#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTGGTTCTTCTTCACAGCAGCAGCTAACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGGAGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCCGCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACGAGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCCTGAGGATCGCGCANGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCGAGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAACGACTGGGTGATGAACAGATGGGCGACTGNACCGACAGGTTCGGGTGAACAACCGGGTTTGGGCCACGTGGCACCGGGGGACACAGGAGGGGCGGGCGCTGCAGCGGGAGCTCATAAGGTTTCTTAACGCCGGGCCCCTTTTGAACGGGCGCCGACGGGCACGTTCTCCCCGGGGTGCCACGCGCGCGGCGAATGTTGTCGGATGAACACCCTGCTGCAGGCTACTCCGGATCCCGGGTAGAAATCTCCAAGGGGTCGCCGAGTTGTTATACCCCACCTTA]

[+] EMBL AW155403             [GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTGGTTCTTCTTCACAGCAGCAGCTAACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGGAGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCCGCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACGAGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCCTGAGGATCGCGCANGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCGAGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAACGACTGGGTGATGAACAGATGGGCGACTGNACCGACAGGTTCGGGTGAACAACCGGGTTTGGGCCACGTGGCACCGGGGGACACAGGAGGGGCGGGCGCTGCAGCGGGAGCTCATAAGGTTTCTTAACGCCGGGCCCCTTTTGAACGGGCGCCGACGGGCACGTTCTCCCCGGGGTGCCACGCGCGCGGCGAATGTTGTCGGATGAACACCCTGCTGCAGGCTACTCCGGATCCCGGGTAGAAATCTCCAAGGGGTCGCCGAGTTGTTATACCCCACCTTA]




>consensus_493#1
GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTGGTTCTTCTTCACAGCAGCAGCTA
ACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGG
AGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCC
GCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACG
AGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCC
TGAGGATCGCGCANGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCG
AGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAACGACTGGGTGATGAACAGAT
GGGCGACTGNACCGACAGGTTCGGGTGAACAACCGGGTTTGGGCCACGTGGCACCGGGGG
ACACAGGAGGGGCGGGCGCTGCAGCGGGAGCTCATAAGGTTTCTTAACGCCGGGCCCCTT
TTGAACGGGCGCCGACGGGCACGTTCTCCCCGGGGTGCCACGCGCGCGGCGAATGTTGTC
GGATGAACACCCTGCTGCAGGCTACTCCGGATCCCGGGTAGAAATCTCCAAGGGGTCGCC
GAGTTGTTATACCCCACCTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_493#0      GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTTCTTCTTCTTCACAGCAGCAGCTA 60
consensus_493#1      GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTGGTTCTTCTTCACAGCAGCAGCTA 60
                     ************************************  **********************

consensus_493#0      ACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGG 120
consensus_493#1      ACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGG 120
                     ************************************************************

consensus_493#0      AGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCC 180
consensus_493#1      AGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCC 180
                     ************************************************************

consensus_493#0      GCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACG 240
consensus_493#1      GCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACG 240
                     ************************************************************

consensus_493#0      AGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCC 300
consensus_493#1      AGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCC 300
                     ************************************************************

consensus_493#0      TGAGGATCGCGCAGGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCG 360
consensus_493#1      TGAGGATCGCGCANGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCG 360
                     ************* **********************************************

consensus_493#0      AGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAGCGACTGGGTGATGAACAGCA 420
consensus_493#1      AGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAACGACTGGGTGATGAACAG-A 419
                     *************************************** ****************** *

consensus_493#0      TGGCGAACGGCACCGACAGCTACGGCGTCACCACCGGGTTCGGCGCCACGTCGCACCGGC 480
consensus_493#1      TGGGCGACTGNACCGACAGGTTCGGGTGAACAACCGGGTTTGG-GCCACGTGGCACCGGG 478
                     ***   ** * ******** * ***    ** ******** ** ******* ******* 

consensus_493#0      GGACCAAGGAGGGCGGCGCGCTGCAGCGGGAGCTCATCATGTTCCTCAACGCCGG-CGCC 539
consensus_493#1      GGACACAGGAGGGGCGGGCGCTGCAGCGGGAGCTCATAAGGTTTCTTAACGCCGGGCCCC 538
                     ****  *******  * ******************** * *** ** ******** * **

consensus_493#0      TTCGGCACCGGCGCCGACGG-CACGT-CTTCCCGCGGTGCCA-GCGCGCGGNATGC-TCG 595
consensus_493#1      TTTTGAACGGGCGCCGACGGGCACGTTCTCCCCGGGGTGCCACGCGCGCGGCGAATGTTG 598
                     **  * ** *********** ***** ** **** ******* ********      * *

consensus_493#0      TCGGATCA-CACCCTG-TGCAGGCTCTCCGATCNGTTTAGATCTAAGGGGCGCAACTGTA 653
consensus_493#1      TCGGATGAACACCCTGCTGCAGGCT--------ACTCCGGATCCCGGGTAGAAATCTCCA 650
                     ****** * ******* ********          *   ****   **     * **  *

consensus_493#0      AGCCAGTTAGCGGCTGCGTCGGGACAAACGGTGGAACTTTCTTTCTATTCGGGTTTACGC 713
consensus_493#1      AG--GGGTCGCCGAGTTGTTATACCCCACCTTA--------------------------- 681
                     **   * * ** *    **     *  **  *                            

consensus_493#0      GGGAATCCTTGGGGCCCAGGGAGGACCCCAGGCTAAAATTATTGTGTTTTTTCTCAAGGA 773
consensus_493#1      ------------------------------------------------------------
                                                                                 

consensus_493#0      GAAGAGAGGGGGGCGCCGCCCCTTCGAACCATACCATAATGTTTTTTGTGGTGGTTGNTA 833
consensus_493#1      ------------------------------------------------------------
                                                                                 

consensus_493#0      TTCGTTAAAATATCCTCCTCTCACACAATGTGAAGTATATATAGAAACCG 883
consensus_493#1      --------------------------------------------------