These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence [GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTTCTTCTTCTTCACAGCAGCAGCTAACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGGAGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCCGCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACGAGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCCTGAGGATCGCGCAGGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCGAGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAGCGACTGGGTGATGAACAGCATGGCGAACGGCACCGACAGCTACGGCGTCACCACCGGGTTCGGCGCCACGTCGCACCGGCGGACCAAGGAGGGCGGCGCGCTGCAGCGGGAGCTCATCATGTTCCTCAACGCCGGCGCCTTCGGCACCGGCGCCGACGGCACGTCTTCCCGCGGTGCCAGCGCGCGGNATGCTCGTCGGATCACACCCTGTGCAGGCTCTCCGATCNGTTTAGATCTAAGGGGCGCAACTGTAAGCCAGTTAGCGGCTGCGTCGGGACAAACGGTGGAACTTTCTTTCTATTCGGGTTTACGCGGGAATCCTTGGGGCCCAGGGAGGACCCCAGGCTAAAATTATTGTGTTTTTTCTCAAGGAGAAGAGAGGGGGGCGCCGCCCCTTCGAACCATACCATAATGTTTTTTGTGGTGGTTGNTATTCGTTAAAATATCCTCCTCTCACACAATGTGAAGTATATATAGAAACCG] [+] EMBL AW155576 [GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTTCTTCTTCTTCACAGCAGCAGCTAACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGGAGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCCGCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACGAGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCCTGAGGATCGCGCAGGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCGAGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAGCGACTGGGTGATGAACAGCATGGCGAACGGCACCGACAGCTACGGCGTCACCACCGGGTTCGGCGCCACGTCGCACCGGCGGACCAAGGAGGGCGGCGCGCTGCAGCGGGAGCTCATCATGTTCCTCAACGCCGGCGCCTTCGGCACCGGCGCCGACGGCACGTCTTCCCGCGGTGCCAGCGCGCGGNATGCTCGTCGGATCACACCCTGTGCAGGCTCTCCGATCNGTTTAGATCTAAGGGGCGCAACTGTAAGCCAGTTAGCGGCTGCGTCGGGACAAACGGTGGAACTTTCTTTCTATTCGGGTTTACGCGGGAATCCTTGGGGCCCAGGGAGGACCCCAGGCTAAAATTATTGTGTTTTTTCTCAAGGAGAAGAGAGGGGGGCGCCGCCCCTTCGAACCATACCATAATGTTTTTTGTGGTGGTTGNTATTCGTTAAAATATCCTCCTCTCACACAATGTGAAGTATATATAGAAACCG] consensusID : consensus_493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTGGTTCTTCTTCACAGCAGCAGCTAACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGGAGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCCGCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACGAGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCCTGAGGATCGCGCANGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCGAGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAACGACTGGGTGATGAACAGATGGGCGACTGNACCGACAGGTTCGGGTGAACAACCGGGTTTGGGCCACGTGGCACCGGGGGACACAGGAGGGGCGGGCGCTGCAGCGGGAGCTCATAAGGTTTCTTAACGCCGGGCCCCTTTTGAACGGGCGCCGACGGGCACGTTCTCCCCGGGGTGCCACGCGCGCGGCGAATGTTGTCGGATGAACACCCTGCTGCAGGCTACTCCGGATCCCGGGTAGAAATCTCCAAGGGGTCGCCGAGTTGTTATACCCCACCTTA] [+] EMBL AW155403 [GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTGGTTCTTCTTCACAGCAGCAGCTAACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGGAGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCCGCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACGAGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCCTGAGGATCGCGCANGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCGAGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAACGACTGGGTGATGAACAGATGGGCGACTGNACCGACAGGTTCGGGTGAACAACCGGGTTTGGGCCACGTGGCACCGGGGGACACAGGAGGGGCGGGCGCTGCAGCGGGAGCTCATAAGGTTTCTTAACGCCGGGCCCCTTTTGAACGGGCGCCGACGGGCACGTTCTCCCCGGGGTGCCACGCGCGCGGCGAATGTTGTCGGATGAACACCCTGCTGCAGGCTACTCCGGATCCCGGGTAGAAATCTCCAAGGGGTCGCCGAGTTGTTATACCCCACCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_493#0 GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTTCTTCTTCTTCACAGCAGCAGCTA 60 consensus_493#1 GCAATCCAGAGTGCCACACTACCCAGCTCTTCTTCTGGTTCTTCTTCACAGCAGCAGCTA 60 ************************************ ********************** consensus_493#0 ACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGG 120 consensus_493#1 ACCAAGAAGCCAAAGCTTCCATTGATCACTCGCTCTGCTCACATTCTGATACTGCGATGG 120 ************************************************************ consensus_493#0 AGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCC 180 consensus_493#1 AGTGCGAGACTGGCTACGTCGCCGCGGCCGCCGATGGTGGTCTCTGCATGGAGGTGCCCC 180 ************************************************************ consensus_493#0 GCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACG 240 consensus_493#1 GCGCCGACCCGCTCAACTGGGGGAAGGCGGCGGAGGAGATGGCCGGGAGCCACCTCGACG 240 ************************************************************ consensus_493#0 AGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCC 300 consensus_493#1 AGGTGAAGAGGATGGTGGCGGAGTACCGGCAGCCCGTGGTGCGGATCGAGGGCGCCAGCC 300 ************************************************************ consensus_493#0 TGAGGATCGCGCAGGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCG 360 consensus_493#1 TGAGGATCGCGCANGTGGCGGCGGTTGCCGGCGCCGGCGACGGCGAGGCCGCCATGGTCG 360 ************* ********************************************** consensus_493#0 AGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAGCGACTGGGTGATGAACAGCA 420 consensus_493#1 AGCTCGACGAGTCGGCGCGGGAGCGCGTCAAGGCCAGCAACGACTGGGTGATGAACAG-A 419 *************************************** ****************** * consensus_493#0 TGGCGAACGGCACCGACAGCTACGGCGTCACCACCGGGTTCGGCGCCACGTCGCACCGGC 480 consensus_493#1 TGGGCGACTGNACCGACAGGTTCGGGTGAACAACCGGGTTTGG-GCCACGTGGCACCGGG 478 *** ** * ******** * *** ** ******** ** ******* ******* consensus_493#0 GGACCAAGGAGGGCGGCGCGCTGCAGCGGGAGCTCATCATGTTCCTCAACGCCGG-CGCC 539 consensus_493#1 GGACACAGGAGGGGCGGGCGCTGCAGCGGGAGCTCATAAGGTTTCTTAACGCCGGGCCCC 538 **** ******* * ******************** * *** ** ******** * ** consensus_493#0 TTCGGCACCGGCGCCGACGG-CACGT-CTTCCCGCGGTGCCA-GCGCGCGGNATGC-TCG 595 consensus_493#1 TTTTGAACGGGCGCCGACGGGCACGTTCTCCCCGGGGTGCCACGCGCGCGGCGAATGTTG 598 ** * ** *********** ***** ** **** ******* ******** * * consensus_493#0 TCGGATCA-CACCCTG-TGCAGGCTCTCCGATCNGTTTAGATCTAAGGGGCGCAACTGTA 653 consensus_493#1 TCGGATGAACACCCTGCTGCAGGCT--------ACTCCGGATCCCGGGTAGAAATCTCCA 650 ****** * ******* ******** * **** ** * ** * consensus_493#0 AGCCAGTTAGCGGCTGCGTCGGGACAAACGGTGGAACTTTCTTTCTATTCGGGTTTACGC 713 consensus_493#1 AG--GGGTCGCCGAGTTGTTATACCCCACCTTA--------------------------- 681 ** * * ** * ** * ** * consensus_493#0 GGGAATCCTTGGGGCCCAGGGAGGACCCCAGGCTAAAATTATTGTGTTTTTTCTCAAGGA 773 consensus_493#1 ------------------------------------------------------------ consensus_493#0 GAAGAGAGGGGGGCGCCGCCCCTTCGAACCATACCATAATGTTTTTTGTGGTGGTTGNTA 833 consensus_493#1 ------------------------------------------------------------ consensus_493#0 TTCGTTAAAATATCCTCCTCTCACACAATGTGAAGTATATATAGAAACCG 883 consensus_493#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||