These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [TTTTTTTTTTACAGACAATTGTATGGATATTCATACCTGGGTGAAACTATTCTTGTTTTTATTGCATTTACAAAGTGCAGATTCTTATGCATCAAAAAAGGAATAAATAAAAAACCGGCGCCTATCAAATATTAATCTATCAGCCTTAGGTACTTCTCTCCATAATCACCAGCTATGAAGGGCACCCCTGTATGTACATCCGAATCTGAATGAATTTCTAATTAAGCCTTCATCTTTAAGAAAAGAGGATGGATCCGTCCTTTGTTTTAAATCGGATAACAAAAATACCGCGGACTATCCATAATTGATTTCAATATGTTTGCGAACTAGGTTTTACTATAACGACGCCGACATAGAGCTTGTAGACAATCATGATAGCTGGCGAGATCCTTTTGTAATTGCCTAACATTTTCGGCTGTGACGATTTTACTAGGGCTCCAATCTTAAATTTCCATATTAGCTCACACATATGGCAAACGGTCTTGAACCCTCACACTTAATGCGGAGATGCACCTTGGGCAATTTGAATATTCACCACTCTTACCACTTATATGGTGGGTTATAGCGCACTCAGATTATTGACCCAGAGCCTATTTGGGAACAGGTGCTATGCTTACGGGAACCCAACCGACCTTTTTCATGGTCACAAAAGACACCGGGGCTCTCCCATTGGAGTTGCAATCCCCC] [+] EMBL CA760811 [TTTTTTTTTTACAGACAATTGTATGGATATTCATACCTGGGTGAAACTATTCTTGTTTTTATTGCATTTACAAAGTGCAGATTCTTATGCATCAAAAAAGGAATAAATAAAAAACCGGCGCCTATCAAATATTAATCTATCAGCCTTAGGTACTTCTCTCCATAATCACCAGCTATGAAGGGCACCCCTGTATGTACATCCGAATCTGAATGAATTTCTAATTAAGCCTTCATCTTTAAGAAAAGAGGATGGATCCGTCCTTTGTTTTAAATCGGATAACAAAAATACCGCGGACTATCCATAATTGATTTCAATATGTTTGCGAACTAGGTTTTACTATAACGACGCCGACATAGAGCTTGTAGACAATCATGATAGCTGGCGAGATCCTTTTGTAATTGCCTAACATTTTCGGCTGTGACGATTTTACTAGGGCTCCAATCTTAAATTTCCATATTAGCTCACACATATGGCAAACGGTCTTGAACCCTCACACTTAATGCGGAGATGCACCTTGGGCAATTTGAATATTCACCACTCTTACCACTTATATGGTGGGTTATAGCGCACTCAGATTATTGACCCAGAGCCTATTTGGGAACAGGTGCTATGCTTACGGGAACCCAACCGACCTTTTTCATGGTCACAAAAGACACCGGGGCTCTCCCATTGGAGTTGCAATCCCCC] consensusID : consensus_4942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 345 fasta sequence [TTTTTTTTTCATGCCTAAAGTCACAGATAATCATATATCTTTTACTTACACAGTGGCAGATACAGATAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTTACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACCAACACCTATGAAATATGAATCTATCATCCTTATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCCGTATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGAAGGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAAAC] [+] EMBL CA763267 [TTTTTTTTTCATGCCTAAAGTCACAGATAATCATATATCTTTTACTTACACAGTGGCAGATACAGATAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTTACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACCAACACCTATGAAATATGAATCTATCATCCTTATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCCGTATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGAAGGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAAAC] [+] EMBL CF297011 [ tttttttTAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTTACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACTAACACCTATGAAATATGAATCTATCATCC TATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCTGTATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGAAGGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4942#0 ---------------------------------------------------TTTTTTTTT 9 consensus_4942#1 TTTTTTTTTCATGCCTAAAGTCACAGATAATCATATATCTTTTACTTACACAGTGGCAGA 60 * consensus_4942#0 TACAGACAATTGTATGGATATTCATACCTGGGTGAAACTATTCTTGTTTTTATTGCATTT 69 consensus_4942#1 TACAGATAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTT 120 ****** ******************** ****** ************************* consensus_4942#0 ACAAAGTGCAGATTCTTATGCATCAAAAAAGGAATAAATAAAAAACCGGCGCCTATCAAA 129 consensus_4942#1 ACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACCAACACCTATGAAA 180 ***** **** * * ********* ******** ************ * ***** *** consensus_4942#0 TATTAATCTATCAGCCTTAGGTACTTCTCTCCATAATCACCAGCTATGAAGGGCACCCCT 189 consensus_4942#1 TATGAATCTATCATCCTTATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCC- 239 *** ********* ***** **** ***** **** **** ********* * ***** consensus_4942#0 GTATGTACATCCGAATCTGAATGAATTTCTAATTAAGCCTTCATCTTTAAGAAAAGAGGA 249 consensus_4942#1 GTATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGA 299 ************ ******************** ************* *********** consensus_4942#0 TGGATCCGTCCTTTGTTTTAAATCGGATAACAAAAATACCGCGGACTATCCATAATTGAT 309 consensus_4942#1 AGGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAAAC-------------- 345 ****** ******* * ************ * ******** ** consensus_4942#0 TTCAATATGTTTGCGAACTAGGTTTTACTATAACGACGCCGACATAGAGCTTGTAGACAA 369 consensus_4942#1 ------------------------------------------------------------ consensus_4942#0 TCATGATAGCTGGCGAGATCCTTTTGTAATTGCCTAACATTTTCGGCTGTGACGATTTTA 429 consensus_4942#1 ------------------------------------------------------------ consensus_4942#0 CTAGGGCTCCAATCTTAAATTTCCATATTAGCTCACACATATGGCAAACGGTCTTGAACC 489 consensus_4942#1 ------------------------------------------------------------ consensus_4942#0 CTCACACTTAATGCGGAGATGCACCTTGGGCAATTTGAATATTCACCACTCTTACCACTT 549 consensus_4942#1 ------------------------------------------------------------ consensus_4942#0 ATATGGTGGGTTATAGCGCACTCAGATTATTGACCCAGAGCCTATTTGGGAACAGGTGCT 609 consensus_4942#1 ------------------------------------------------------------ consensus_4942#0 ATGCTTACGGGAACCCAACCGACCTTTTTCATGGTCACAAAAGACACCGGGGCTCTCCCA 669 consensus_4942#1 ------------------------------------------------------------ consensus_4942#0 TTGGAGTTGCAATCCCCC 687 consensus_4942#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||