Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4942 cluster # 4942       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4942#0 length = 687 sequences # 1  
consensus_4942#1 length = 345 sequences # 2  

consensusID : consensus_4942#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence
                              [TTTTTTTTTTACAGACAATTGTATGGATATTCATACCTGGGTGAAACTATTCTTGTTTTTATTGCATTTACAAAGTGCAGATTCTTATGCATCAAAAAAGGAATAAATAAAAAACCGGCGCCTATCAAATATTAATCTATCAGCCTTAGGTACTTCTCTCCATAATCACCAGCTATGAAGGGCACCCCTGTATGTACATCCGAATCTGAATGAATTTCTAATTAAGCCTTCATCTTTAAGAAAAGAGGATGGATCCGTCCTTTGTTTTAAATCGGATAACAAAAATACCGCGGACTATCCATAATTGATTTCAATATGTTTGCGAACTAGGTTTTACTATAACGACGCCGACATAGAGCTTGTAGACAATCATGATAGCTGGCGAGATCCTTTTGTAATTGCCTAACATTTTCGGCTGTGACGATTTTACTAGGGCTCCAATCTTAAATTTCCATATTAGCTCACACATATGGCAAACGGTCTTGAACCCTCACACTTAATGCGGAGATGCACCTTGGGCAATTTGAATATTCACCACTCTTACCACTTATATGGTGGGTTATAGCGCACTCAGATTATTGACCCAGAGCCTATTTGGGAACAGGTGCTATGCTTACGGGAACCCAACCGACCTTTTTCATGGTCACAAAAGACACCGGGGCTCTCCCATTGGAGTTGCAATCCCCC]

[+] EMBL CA760811             [TTTTTTTTTTACAGACAATTGTATGGATATTCATACCTGGGTGAAACTATTCTTGTTTTTATTGCATTTACAAAGTGCAGATTCTTATGCATCAAAAAAGGAATAAATAAAAAACCGGCGCCTATCAAATATTAATCTATCAGCCTTAGGTACTTCTCTCCATAATCACCAGCTATGAAGGGCACCCCTGTATGTACATCCGAATCTGAATGAATTTCTAATTAAGCCTTCATCTTTAAGAAAAGAGGATGGATCCGTCCTTTGTTTTAAATCGGATAACAAAAATACCGCGGACTATCCATAATTGATTTCAATATGTTTGCGAACTAGGTTTTACTATAACGACGCCGACATAGAGCTTGTAGACAATCATGATAGCTGGCGAGATCCTTTTGTAATTGCCTAACATTTTCGGCTGTGACGATTTTACTAGGGCTCCAATCTTAAATTTCCATATTAGCTCACACATATGGCAAACGGTCTTGAACCCTCACACTTAATGCGGAGATGCACCTTGGGCAATTTGAATATTCACCACTCTTACCACTTATATGGTGGGTTATAGCGCACTCAGATTATTGACCCAGAGCCTATTTGGGAACAGGTGCTATGCTTACGGGAACCCAACCGACCTTTTTCATGGTCACAAAAGACACCGGGGCTCTCCCATTGGAGTTGCAATCCCCC]


>consensus_4942#0 TTTTTTTTTTACAGACAATTGTATGGATATTCATACCTGGGTGAAACTATTCTTGTTTTT ATTGCATTTACAAAGTGCAGATTCTTATGCATCAAAAAAGGAATAAATAAAAAACCGGCG CCTATCAAATATTAATCTATCAGCCTTAGGTACTTCTCTCCATAATCACCAGCTATGAAG GGCACCCCTGTATGTACATCCGAATCTGAATGAATTTCTAATTAAGCCTTCATCTTTAAG AAAAGAGGATGGATCCGTCCTTTGTTTTAAATCGGATAACAAAAATACCGCGGACTATCC ATAATTGATTTCAATATGTTTGCGAACTAGGTTTTACTATAACGACGCCGACATAGAGCT TGTAGACAATCATGATAGCTGGCGAGATCCTTTTGTAATTGCCTAACATTTTCGGCTGTG ACGATTTTACTAGGGCTCCAATCTTAAATTTCCATATTAGCTCACACATATGGCAAACGG TCTTGAACCCTCACACTTAATGCGGAGATGCACCTTGGGCAATTTGAATATTCACCACTC TTACCACTTATATGGTGGGTTATAGCGCACTCAGATTATTGACCCAGAGCCTATTTGGGA ACAGGTGCTATGCTTACGGGAACCCAACCGACCTTTTTCATGGTCACAAAAGACACCGGG GCTCTCCCATTGGAGTTGCAATCCCCC



consensusID : consensus_4942#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 345
fasta sequence
                              [TTTTTTTTTCATGCCTAAAGTCACAGATAATCATATATCTTTTACTTACACAGTGGCAGATACAGATAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTTACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACCAACACCTATGAAATATGAATCTATCATCCTTATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCCGTATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGAAGGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAAAC]

[+] EMBL CA763267             [TTTTTTTTTCATGCCTAAAGTCACAGATAATCATATATCTTTTACTTACACAGTGGCAGATACAGATAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTTACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACCAACACCTATGAAATATGAATCTATCATCCTTATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCCGTATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGAAGGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAAAC]
[+] EMBL CF297011             [                                                           tttttttTAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTTACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACTAACACCTATGAAATATGAATCTATCATCC TATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCTGTATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGAAGGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAGAC]


>consensus_4942#1 TTTTTTTTTCATGCCTAAAGTCACAGATAATCATATATCTTTTACTTACACAGTGGCAGA TACAGATAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTT ACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACCAACACCTATGAAA TATGAATCTATCATCCTTATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCCG TATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGAA GGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4942#0      ---------------------------------------------------TTTTTTTTT 9
consensus_4942#1      TTTTTTTTTCATGCCTAAAGTCACAGATAATCATATATCTTTTACTTACACAGTGGCAGA 60
                                                                           *      

consensus_4942#0      TACAGACAATTGTATGGATATTCATACCTGGGTGAAACTATTCTTGTTTTTATTGCATTT 69
consensus_4942#1      TACAGATAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTT 120
                      ****** ******************** ****** *************************

consensus_4942#0      ACAAAGTGCAGATTCTTATGCATCAAAAAAGGAATAAATAAAAAACCGGCGCCTATCAAA 129
consensus_4942#1      ACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACCAACACCTATGAAA 180
                      ***** **** *  * ********* ******** ************  * ***** ***

consensus_4942#0      TATTAATCTATCAGCCTTAGGTACTTCTCTCCATAATCACCAGCTATGAAGGGCACCCCT 189
consensus_4942#1      TATGAATCTATCATCCTTATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCC- 239
                      *** ********* ***** **** ***** **** **** *********  * ***** 

consensus_4942#0      GTATGTACATCCGAATCTGAATGAATTTCTAATTAAGCCTTCATCTTTAAGAAAAGAGGA 249
consensus_4942#1      GTATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGA 299
                      ************ ******************** *************  ***********

consensus_4942#0      TGGATCCGTCCTTTGTTTTAAATCGGATAACAAAAATACCGCGGACTATCCATAATTGAT 309
consensus_4942#1      AGGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAAAC-------------- 345
                       ****** ******* * ************ * ********   **              

consensus_4942#0      TTCAATATGTTTGCGAACTAGGTTTTACTATAACGACGCCGACATAGAGCTTGTAGACAA 369
consensus_4942#1      ------------------------------------------------------------
                                                                                  

consensus_4942#0      TCATGATAGCTGGCGAGATCCTTTTGTAATTGCCTAACATTTTCGGCTGTGACGATTTTA 429
consensus_4942#1      ------------------------------------------------------------
                                                                                  

consensus_4942#0      CTAGGGCTCCAATCTTAAATTTCCATATTAGCTCACACATATGGCAAACGGTCTTGAACC 489
consensus_4942#1      ------------------------------------------------------------
                                                                                  

consensus_4942#0      CTCACACTTAATGCGGAGATGCACCTTGGGCAATTTGAATATTCACCACTCTTACCACTT 549
consensus_4942#1      ------------------------------------------------------------
                                                                                  

consensus_4942#0      ATATGGTGGGTTATAGCGCACTCAGATTATTGACCCAGAGCCTATTTGGGAACAGGTGCT 609
consensus_4942#1      ------------------------------------------------------------
                                                                                  

consensus_4942#0      ATGCTTACGGGAACCCAACCGACCTTTTTCATGGTCACAAAAGACACCGGGGCTCTCCCA 669
consensus_4942#1      ------------------------------------------------------------
                                                                                  

consensus_4942#0      TTGGAGTTGCAATCCCCC 687
consensus_4942#1      ------------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)