cluster # 4945

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Oryza sativa
cluster # 4945 cluster # 4945 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4945#0 length = 843 sequences # 2

consensus_4945#1 length = 323 sequences # 1

consensusID : consensus_4945#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 843
fasta sequence

                              [TCCTGTCCAAGGTGGTCCTCCAAGACTGACATCCGTTGTTAAATGTGGTGATGCTAGTCGAGACAGAATTCGGGCGATACTTGGTGATGCCTTCTCCAGAGTTTCTGAAGAGACTAGAAAGGATGACAGGGAGGAAGTGAGGAACATCATAGAAGAAGTAAAAGCATGTGACCCATTCAGGATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGGGAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGATCACAACACAGACTTCCGGAGAAGGGTTCTTCTAGGACAAGTGCAGCCTGAGAGAATTGCTGACCTAACCCCGACAGAAATGGCTAGCGACACCAGGAAGCTTGAGAACAAGAAGATCGAGGAGAAGGCTCTGTTCGAGTGCGAGCGTGGAGGAGCACCGAAGGCCACCACTGATCAGTTCAAGTGTGGCAGGTGCGGCCAGCGCAAGACTACCTACTACCAGCTCCAGACTCGGAGCGCCGACGAGCCGATGACGACGTTCGTGACCTGCGTGAACTGCAACAATCACTGGAAGTTCTGCTAAGCTAGGCACATCCTACTGAGAAGTGTTAGTGTAGTTGACCCTGGAGTTTGACAGGCAGGTTAGTTTCGGGCCCTGCTTATCTGGGCCCGTTTCATCTTTTTTCCCCTTAAGTTAGCTTGTTCCGAATTCGATTTGTTCTAGTGCCATTTGACTGCATAATGGCCGGCCGTTGGGCTTGCATTGTCAGGCTACTGCTGTTGTACTTATCAGTCTTGTTTATTGTACCATTGGATGCAATAATGCCATAATGGTCATGC]

[+] EMBL AK103353             [TCCTGTCCAAGGTGGTCCTCCAAGACTGACATCCGTTGTTAAATGTGGTGATGCTAGTCGAGACAGAATTCGGGCGATACTTGGTGATGCCTTCTCCAGAGTTTCTGAAGAGACTAGAAAGGATGACAGGGAGGAAGTGAGGAACATCATAGAAGAAGTAAAAGCATGTGACCCATTCAGGATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGGGAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGATCACAACACAGACTTCCGGAGAAGGGTTCTTCTAGGACAAGTGCAGCCTGAGAGAATTGCTGACCTAACCCCGACAGAAATGGCTAGCGACACCAGGAAGCTTGAGAACAAGAAGATCGAGGAGAAGGCTCTGTTCGAGTGCGAGCGTGGAGGAGCACCGAAGGCCACCACTGATCAGTTCAAGTGTGGCAGGTGCGGCCAGCGCAAGACTACCTACTACCAGCTCCAGACTCGGAGCGCCGACGAGCCGATGACGACGTTCGTGACCTGCGTGAACTGCAACAATCACTGGAAGTTCTGCTAAGCTAGGCACATCCTACTGAGAAGTGTTAGTGTAGTTGACCCTGGAGTTTGACAGGCAGGTTAGTTTCGGGCCCTGCTTATCTGGGCCCGTTTCATCTTTTTTCCCCTTAAGTTAGCTTGTTCCGAATTCGATTTGTTCTAGTGCCATTTGACTGCATAATGGCCGGCCGTTGGGCTTGCATTGTCAGGCTACTGCTGTTGTACTTATCAGTCTTGTTTATTGTACCATTGGATGCAATAATGCCATAATGGTCATGC]
[+] EMBL CA765863             [                                                                                                                                                                                         CTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGGGAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGATCACAACACAGACTTCCGGAGAAGGGTTCTTCTAGGACAAGTGCAGCCTGAGAGAATTGCTGACCTAACCCCGACAGAAATGGCTAGCGACACCAGGAAGCTTGAGAACAAGAAGATCGAGGAGAAGGCTCTGTTCGAGTGCGAGCGTGGAGGAGCACCGAAGGCCACCACTGATCGGTTCAAGTGTGGCAGGTGCGGCCAGCGCAAGACTACCTACTACCAGCTCCAGACTCGGAGCGCCGACGAGCCGATGACGACGTTCGTGACCAGCGTGAACTGCAACAATCACTGGAAGTTCTGCTAAGCTAGGCACATCCTACTGAGAAGTGTTAGTGTAGTTGACCCTGGAGTTTGACAGGCAGGTTAGTTTCGGGCCCTGCTTATCTGGGCCCGTTTCATCTTTTTTCCCCTTAAGTTAGCTTGTTCCGAATTCAATTTGTTCTAGTGCCATTCGACTGCATAATGGCCGGCCGTTGGGCTTGCATTGTCAGGCTACTGCTGTTGTACTTATCAGTCTTGTTTATTGTACCATTGGATGCAATAATGCCATAAT        ]




>consensus_4945#0
TCCTGTCCAAGGTGGTCCTCCAAGACTGACATCCGTTGTTAAATGTGGTGATGCTAGTCG
AGACAGAATTCGGGCGATACTTGGTGATGCCTTCTCCAGAGTTTCTGAAGAGACTAGAAA
GGATGACAGGGAGGAAGTGAGGAACATCATAGAAGAAGTAAAAGCATGTGACCCATTCAG
GATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGGGAATTTTAATGGACCTAA
TAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGATCACAACACAGACTTCCG
GAGAAGGGTTCTTCTAGGACAAGTGCAGCCTGAGAGAATTGCTGACCTAACCCCGACAGA
AATGGCTAGCGACACCAGGAAGCTTGAGAACAAGAAGATCGAGGAGAAGGCTCTGTTCGA
GTGCGAGCGTGGAGGAGCACCGAAGGCCACCACTGATCAGTTCAAGTGTGGCAGGTGCGG
CCAGCGCAAGACTACCTACTACCAGCTCCAGACTCGGAGCGCCGACGAGCCGATGACGAC
GTTCGTGACCTGCGTGAACTGCAACAATCACTGGAAGTTCTGCTAAGCTAGGCACATCCT
ACTGAGAAGTGTTAGTGTAGTTGACCCTGGAGTTTGACAGGCAGGTTAGTTTCGGGCCCT
GCTTATCTGGGCCCGTTTCATCTTTTTTCCCCTTAAGTTAGCTTGTTCCGAATTCGATTT
GTTCTAGTGCCATTTGACTGCATAATGGCCGGCCGTTGGGCTTGCATTGTCAGGCTACTG
CTGTTGTACTTATCAGTCTTGTTTATTGTACCATTGGATGCAATAATGCCATAATGGTCA
TGC

consensusID : consensus_4945#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [ACCTGTTAGGACACTGGAAAAAGGTTGTCATTGAAGAAGACAAGAAAAATGGGGCACTGCAGAATGGAAAATCGAGTTCTACTGTGGTAAAGGTTGAGAAGGTGGAGCCTTCTCCAGAGTTTCTGAAGAGACTAGAAAGGATGACAGGGAGGAAGTNAGGAACATCATAGAAGAAGTAAAAGCATGTGACCCATTCAGGATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGGGAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGATCACAACACAGACTTCCGGAGAA]

[+] EMBL OS1168A              [ACCTGTTAGGACACTGGAAAAAGGTTGTCATTGAAGAAGACAAGAAAAATGGGGCACTGCAGAATGGAAAATCGAGTTCTACTGTGGTAAAGGTTGAGAAGGTGGAGCCTTCTCCAGAGTTTCTGAAGAGACTAGAAAGGATGACAGGGAGGAAGTNAGGAACATCATAGAAGAAGTAAAAGCATGTGACCCATTCAGGATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGGGAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGATCACAACACAGACTTCCGGAGAA]




>consensus_4945#1
ACCTGTTAGGACACTGGAAAAAGGTTGTCATTGAAGAAGACAAGAAAAATGGGGCACTGC
AGAATGGAAAATCGAGTTCTACTGTGGTAAAGGTTGAGAAGGTGGAGCCTTCTCCAGAGT
TTCTGAAGAGACTAGAAAGGATGACAGGGAGGAAGTNAGGAACATCATAGAAGAAGTAAA
AGCATGTGACCCATTCAGGATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGG
GAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGA
TCACAACACAGACTTCCGGAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4945#0      ------------TCCTGTCCAAGGTGGTCCTCCAAGAC--TGACATCCGTTGTTAAATGT 46
consensus_4945#1      ACCTGTTAGGACACTGGAAAAAGGTTGTCATTGAAGAAGACAAGAAAAATGGGGCACTGC 60
                                   *  *   ***** *** *  ****     * *    * *   * ** 

consensus_4945#0      GGTGATGCTAGTCGAGACAGAATTCGGGCGATACTT----GGTGATGCCTTCTCCAGAGT 102
consensus_4945#1      AGAATGGAAAATCGAGTTCTACTGTGGTAAAGGTTGAGAAGGTGGAGCCTTCTCCAGAGT 120
                       *    *  * *****    * *  **   *   *     ****  **************

consensus_4945#0      TTCTGAAGAGACTAGAAAGGATGACAGGGAGGAAGTGAGGAACATCATAGAAGAAGTAAA 162
consensus_4945#1      TTCTGAAGAGACTAGAAAGGATGACAGGGAGGAAGTNAGGAACATCATAGAAGAAGTAAA 180
                      ************************************ ***********************

consensus_4945#0      AGCATGTGACCCATTCAGGATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGG 222
consensus_4945#1      AGCATGTGACCCATTCAGGATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGG 240
                      ************************************************************

consensus_4945#0      GAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGA 282
consensus_4945#1      GAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGA 300
                      ************************************************************

consensus_4945#0      TCACAACACAGACTTCCGGAGAAGGGTTCTTCTAGGACAAGTGCAGCCTGAGAGAATTGC 342
consensus_4945#1      TCACAACACAGACTTCCGGAGAA------------------------------------- 323
                      ***********************                                     

consensus_4945#0      TGACCTAACCCCGACAGAAATGGCTAGCGACACCAGGAAGCTTGAGAACAAGAAGATCGA 402
consensus_4945#1      ------------------------------------------------------------
                                                                                  

consensus_4945#0      GGAGAAGGCTCTGTTCGAGTGCGAGCGTGGAGGAGCACCGAAGGCCACCACTGATCAGTT 462
consensus_4945#1      ------------------------------------------------------------
                                                                                  

consensus_4945#0      CAAGTGTGGCAGGTGCGGCCAGCGCAAGACTACCTACTACCAGCTCCAGACTCGGAGCGC 522
consensus_4945#1      ------------------------------------------------------------
                                                                                  

consensus_4945#0      CGACGAGCCGATGACGACGTTCGTGACCTGCGTGAACTGCAACAATCACTGGAAGTTCTG 582
consensus_4945#1      ------------------------------------------------------------
                                                                                  

consensus_4945#0      CTAAGCTAGGCACATCCTACTGAGAAGTGTTAGTGTAGTTGACCCTGGAGTTTGACAGGC 642
consensus_4945#1      ------------------------------------------------------------
                                                                                  

consensus_4945#0      AGGTTAGTTTCGGGCCCTGCTTATCTGGGCCCGTTTCATCTTTTTTCCCCTTAAGTTAGC 702
consensus_4945#1      ------------------------------------------------------------
                                                                                  

consensus_4945#0      TTGTTCCGAATTCGATTTGTTCTAGTGCCATTTGACTGCATAATGGCCGGCCGTTGGGCT 762
consensus_4945#1      ------------------------------------------------------------
                                                                                  

consensus_4945#0      TGCATTGTCAGGCTACTGCTGTTGTACTTATCAGTCTTGTTTATTGTACCATTGGATGCA 822
consensus_4945#1      ------------------------------------------------------------
                                                                                  

consensus_4945#0      ATAATGCCATAATGGTCATGC 843
consensus_4945#1      ---------------------