cluster # 4952

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Oryza sativa
cluster # 4952 cluster # 4952 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4952#0 length = 1332 sequences # 1

consensus_4952#1 length = 439 sequences # 1
consensus_4952#2 length = 424 sequences # 1

consensusID : consensus_4952#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1332
fasta sequence

                              [AGCCATGGCCATTCAGAAAACTGAAGAGCAGCATTCAGCATTTTTCCATTTGCAGGGGATATGATGTTTGGCTATACATGCACTTGCGCATAATGCACATGTCGCCAGACAGGCCCTAACTCAAAAGCAGATCACAGAGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACTTACTAGCCGAGACTAAGTGTTCGACATGCGCGCACTGGTGAACTGCTGCCATGGCGCGGATCACGTACGCGTACTCCATCATGCGCCGATTTGATAGAAGAGAGCGAGCGCGGCGAGAACGAGGGTGCCCAAGCCGCAGCACGACAGCACCGCCGCCGCGACCGCCACGCTCGCCTTCCTCGCCGGCGCCACGGAGGCCACCACCCCCAGGCTCACCGCGCCGACGAACGCCGACGTCAGGAAGAACGTGCACACCTTCAGCTGCGCCTTGCCCACCGCGCCGCCGAGCAGCCCGCCGAACACGGCAAGCACGGCCCCGAACGACACCGACGCCACCGCCACGGCGATGGCGTACATCGTCCCCAGCTCGGACTTCCCGTCCTCCTCCTCCTCCTCGCCTACCGCCGCGGTGCAGAACTCGATGAACGCCCACGCGGCGGCTCCGGCGACCACTGGGAAGACGACGGCCGGCAACAGGAGCCCGTGAAGGATTGTCGCGGCGATCAGCAGCAGCGCCGGCACCAGCATCGCGAGCATGACGACGTTCGCGATGGCTAGTACAGTCTTCTGCCACCATATCCCCGACGGCGACTGGCGGCGGCGCCGGTGAACTTCACTGTTGGACAGCAGCCTGCAAAGGAGCAGCGCCAAGATTCCGGCCAGACCGGAACCAAGCATGAAGAAGATCGACACCTTGGCGTATGAATACTGACCACCCAATTTCTCTGTCTTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAGAGAATGATGTGGTCACCAAAGATAAGTGAAAGACACCAACAAGGATGGAAGGGACCAATGAAATGGGCAGGAAGTAATAAGCCTTAGGAAGCAGAGAACAAGTGATGGAAATAAATGACAAAATAAGGGAGGATATGGAGGTAGCCAAGAGGACTATGGAAAGTTTCAGCTGGTTGATGGCGCTGATGATGTGCTCTGGCTTGATTGTCATCAACTTCAGGGTGTGGAACATGAGGGAAATTGCGGTGACAAAGGCTGTGAATGCAAAGGAGGAGGCAAATTTCAGTCCGAGTGGAAGTTTGAGTGCATCTCCACGAAGAAATAGAATGTCAATCAGGGGGACTGTAGAGATTGTGACGAGGAGCAATGCAAATTTCAGATTCTTGGGGGCAAA]

[+] EMBL AK066949             [AGCCATGGCCATTCAGAAAACTGAAGAGCAGCATTCAGCATTTTTCCATTTGCAGGGGATATGATGTTTGGCTATACATGCACTTGCGCATAATGCACATGTCGCCAGACAGGCCCTAACTCAAAAGCAGATCACAGAGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACTTACTAGCCGAGACTAAGTGTTCGACATGCGCGCACTGGTGAACTGCTGCCATGGCGCGGATCACGTACGCGTACTCCATCATGCGCCGATTTGATAGAAGAGAGCGAGCGCGGCGAGAACGAGGGTGCCCAAGCCGCAGCACGACAGCACCGCCGCCGCGACCGCCACGCTCGCCTTCCTCGCCGGCGCCACGGAGGCCACCACCCCCAGGCTCACCGCGCCGACGAACGCCGACGTCAGGAAGAACGTGCACACCTTCAGCTGCGCCTTGCCCACCGCGCCGCCGAGCAGCCCGCCGAACACGGCAAGCACGGCCCCGAACGACACCGACGCCACCGCCACGGCGATGGCGTACATCGTCCCCAGCTCGGACTTCCCGTCCTCCTCCTCCTCCTCGCCTACCGCCGCGGTGCAGAACTCGATGAACGCCCACGCGGCGGCTCCGGCGACCACTGGGAAGACGACGGCCGGCAACAGGAGCCCGTGAAGGATTGTCGCGGCGATCAGCAGCAGCGCCGGCACCAGCATCGCGAGCATGACGACGTTCGCGATGGCTAGTACAGTCTTCTGCCACCATATCCCCGACGGCGACTGGCGGCGGCGCCGGTGAACTTCACTGTTGGACAGCAGCCTGCAAAGGAGCAGCGCCAAGATTCCGGCCAGACCGGAACCAAGCATGAAGAAGATCGACACCTTGGCGTATGAATACTGACCACCCAATTTCTCTGTCTTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAGAGAATGATGTGGTCACCAAAGATAAGTGAAAGACACCAACAAGGATGGAAGGGACCAATGAAATGGGCAGGAAGTAATAAGCCTTAGGAAGCAGAGAACAAGTGATGGAAATAAATGACAAAATAAGGGAGGATATGGAGGTAGCCAAGAGGACTATGGAAAGTTTCAGCTGGTTGATGGCGCTGATGATGTGCTCTGGCTTGATTGTCATCAACTTCAGGGTGTGGAACATGAGGGAAATTGCGGTGACAAAGGCTGTGAATGCAAAGGAGGAGGCAAATTTCAGTCCGAGTGGAAGTTTGAGTGCATCTCCACGAAGAAATAGAATGTCAATCAGGGGGACTGTAGAGATTGTGACGAGGAGCAATGCAAATTTCAGATTCTTGGGGGCAAA]




>consensus_4952#0
AGCCATGGCCATTCAGAAAACTGAAGAGCAGCATTCAGCATTTTTCCATTTGCAGGGGAT
ATGATGTTTGGCTATACATGCACTTGCGCATAATGCACATGTCGCCAGACAGGCCCTAAC
TCAAAAGCAGATCACAGAGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACTTACTAGCCG
AGACTAAGTGTTCGACATGCGCGCACTGGTGAACTGCTGCCATGGCGCGGATCACGTACG
CGTACTCCATCATGCGCCGATTTGATAGAAGAGAGCGAGCGCGGCGAGAACGAGGGTGCC
CAAGCCGCAGCACGACAGCACCGCCGCCGCGACCGCCACGCTCGCCTTCCTCGCCGGCGC
CACGGAGGCCACCACCCCCAGGCTCACCGCGCCGACGAACGCCGACGTCAGGAAGAACGT
GCACACCTTCAGCTGCGCCTTGCCCACCGCGCCGCCGAGCAGCCCGCCGAACACGGCAAG
CACGGCCCCGAACGACACCGACGCCACCGCCACGGCGATGGCGTACATCGTCCCCAGCTC
GGACTTCCCGTCCTCCTCCTCCTCCTCGCCTACCGCCGCGGTGCAGAACTCGATGAACGC
CCACGCGGCGGCTCCGGCGACCACTGGGAAGACGACGGCCGGCAACAGGAGCCCGTGAAG
GATTGTCGCGGCGATCAGCAGCAGCGCCGGCACCAGCATCGCGAGCATGACGACGTTCGC
GATGGCTAGTACAGTCTTCTGCCACCATATCCCCGACGGCGACTGGCGGCGGCGCCGGTG
AACTTCACTGTTGGACAGCAGCCTGCAAAGGAGCAGCGCCAAGATTCCGGCCAGACCGGA
ACCAAGCATGAAGAAGATCGACACCTTGGCGTATGAATACTGACCACCCAATTTCTCTGT
CTTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAGAGAATGATGTGGTCACCAAAGA
TAAGTGAAAGACACCAACAAGGATGGAAGGGACCAATGAAATGGGCAGGAAGTAATAAGC
CTTAGGAAGCAGAGAACAAGTGATGGAAATAAATGACAAAATAAGGGAGGATATGGAGGT
AGCCAAGAGGACTATGGAAAGTTTCAGCTGGTTGATGGCGCTGATGATGTGCTCTGGCTT
GATTGTCATCAACTTCAGGGTGTGGAACATGAGGGAAATTGCGGTGACAAAGGCTGTGAA
TGCAAAGGAGGAGGCAAATTTCAGTCCGAGTGGAAGTTTGAGTGCATCTCCACGAAGAAA
TAGAATGTCAATCAGGGGGACTGTAGAGATTGTGACGAGGAGCAATGCAAATTTCAGATT
CTTGGGGGCAAA

consensusID : consensus_4952#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [GACTTGGGCGGCGCCGGTGAACTTCACTGTTGGACAAGCAGCCTGCAAAGGAGCAGCGCCCAAGATTCCGGCCAGACCGGAACCAAGCATGAAGAAGATCGACACCTTGGCGTATGAATACTGACCCACCCAATTTCTCTGTCTTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAGAGAATGATGTGGTCACCAAAGATAAGGTGAGCTGATTTGCACTCTTTAGTGCTTTCTTCAGAGCTTTACTCTCTTCAGGCCTTACATCTCTCACATCGAATTTGCCATTATATATGAAGTGAAAGACACCAACAAGGATGGAAGGGACCAATGAAATGGGCAGGAAGTAATAAGCCTTAGGAAGCAGAGAACAAGTGATGGAAATAAATGACAAAATAAGGGAGGATATGGAGGTAGCCAAGAGGACTATGGAAAGTTT]

[-] EMBL C25876               [GACTTGGGCGGCGCCGGTGAACTTCACTGTTGGACAAGCAGCCTGCAAAGGAGCAGCGCCCAAGATTCCGGCCAGACCGGAACCAAGCATGAAGAAGATCGACACCTTGGCGTATGAATACTGACCCACCCAATTTCTCTGTCTTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAGAGAATGATGTGGTCACCAAAGATAAGGTGAGCTGATTTGCACTCTTTAGTGCTTTCTTCAGAGCTTTACTCTCTTCAGGCCTTACATCTCTCACATCGAATTTGCCATTATATATGAAGTGAAAGACACCAACAAGGATGGAAGGGACCAATGAAATGGGCAGGAAGTAATAAGCCTTAGGAAGCAGAGAACAAGTGATGGAAATAAATGACAAAATAAGGGAGGATATGGAGGTAGCCAAGAGGACTATGGAAAGTTT]




>consensus_4952#1
GACTTGGGCGGCGCCGGTGAACTTCACTGTTGGACAAGCAGCCTGCAAAGGAGCAGCGCC
CAAGATTCCGGCCAGACCGGAACCAAGCATGAAGAAGATCGACACCTTGGCGTATGAATA
CTGACCCACCCAATTTCTCTGTCTTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAG
AGAATGATGTGGTCACCAAAGATAAGGTGAGCTGATTTGCACTCTTTAGTGCTTTCTTCA
GAGCTTTACTCTCTTCAGGCCTTACATCTCTCACATCGAATTTGCCATTATATATGAAGT
GAAAGACACCAACAAGGATGGAAGGGACCAATGAAATGGGCAGGAAGTAATAAGCCTTAG
GAAGCAGAGAACAAGTGATGGAAATAAATGACAAAATAAGGGAGGATATGGAGGTAGCCA
AGAGGACTATGGAAAGTTT

consensusID : consensus_4952#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [TTTTTTTTTTTTTCTCCTCCCTAATCCACCAAATTAGTTTCTACAACATTAATTAATAACTTCCGAATGAACATGTCTCGATTATTTATTTACAAGCATCACAGTTGATGACCGTGAGAGAGTACATTAACATTATATTCCTGCCATCACAGTACTAACCCCTTNTTTCTTGGGTTCAATTTAGGTTTCTTTTCCCCCCTTTTGTATCGATTTGATATCTTGAAATGCATCGCATGCCTCCTTCAGATCACAGAGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACTTACTAGCCGAGACTAAGTGTTCGACATGCGCGCACTGGTGAACTGCTGCCATGGCGCGGATCACGTACGCGTACTCCATCATGCGCCGATTTGATAGAAGAGAGCGAGCGCGGCGAGAACGAGGGTGCCCAAGCCGN]

[-] EMBL AU166312             [TTTTTTTTTTTTTCTCCTCCCTAATCCACCAAATTAGTTTCTACAACATTAATTAATAACTTCCGAATGAACATGTCTCGATTATTTATTTACAAGCATCACAGTTGATGACCGTGAGAGAGTACATTAACATTATATTCCTGCCATCACAGTACTAACCCCTTNTTTCTTGGGTTCAATTTAGGTTTCTTTTCCCCCCTTTTGTATCGATTTGATATCTTGAAATGCATCGCATGCCTCCTTCAGATCACAGAGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACTTACTAGCCGAGACTAAGTGTTCGACATGCGCGCACTGGTGAACTGCTGCCATGGCGCGGATCACGTACGCGTACTCCATCATGCGCCGATTTGATAGAAGAGAGCGAGCGCGGCGAGAACGAGGGTGCCCAAGCCGN]




>consensus_4952#2
TTTTTTTTTTTTTCTCCTCCCTAATCCACCAAATTAGTTTCTACAACATTAATTAATAAC
TTCCGAATGAACATGTCTCGATTATTTATTTACAAGCATCACAGTTGATGACCGTGAGAG
AGTACATTAACATTATATTCCTGCCATCACAGTACTAACCCCTTNTTTCTTGGGTTCAAT
TTAGGTTTCTTTTCCCCCCTTTTGTATCGATTTGATATCTTGAAATGCATCGCATGCCTC
CTTCAGATCACAGAGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACTTACTAGCCGAGAC
TAAGTGTTCGACATGCGCGCACTGGTGAACTGCTGCCATGGCGCGGATCACGTACGCGTA
CTCCATCATGCGCCGATTTGATAGAAGAGAGCGAGCGCGGCGAGAACGAGGGTGCCCAAG
CCGN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4952#0      AGCCATGGCCATTCAGAAAACTGAAGAGCAGCATTCAGCATTTTTCCATTTGCAGGGGAT 60
consensus_4952#1      ------------------------------------------------------------
consensus_4952#2      ------------------------------------------------------------
                                                                                  

consensus_4952#0      ATGATGTTTGGCTATACATGCACTTGCGCATAATGCACATGTCGCCAGACAGGCCCTAAC 120
consensus_4952#1      ------------------------------------------------------------
consensus_4952#2      ------------------------------------------------------------
                                                                                  

consensus_4952#0      TCAAAAGCAGATCACAGAGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACTTACTAGCCG 180
consensus_4952#1      ------------------------------------------------------------
consensus_4952#2      ------------------------------------------------------------
                                                                                  

consensus_4952#0      AGACTAAGTGTTCGACATGCGCGCACTGGTGAACTGCTGCCATGGCGCGGATCACGTACG 240
consensus_4952#1      ------------------------------------------------------------
consensus_4952#2      ------------------------------------------------------------
                                                                                  

consensus_4952#0      CGTACTCCATCATGCGCCGATTTGATAGAAGAGAGCGAGCGCGGCGAGAACGAGGGTGCC 300
consensus_4952#1      ------------------------------------------------------------
consensus_4952#2      ------------------------------------------------------------
                                                                                  

consensus_4952#0      CAAGCCGCAGCACGACAGCACCGCCGCCGCGACCGCCACGCTCGCCTTCCTCGCCGGCGC 360
consensus_4952#1      ------------------------------------------------------------
consensus_4952#2      ------------------------------------------------------------
                                                                                  

consensus_4952#0      CACGGAGGCCACCACCCCCAGGCTCACCGCGCCGACGAACGCCGACGTCAGGAAGAACGT 420
consensus_4952#1      ------------------------------------------------------------
consensus_4952#2      ------------------------------------------------------------
                                                                                  

consensus_4952#0      GCACACCTTCAGCTGCGCCTTGCCCACCGCGCCGCCGAGCAGCCCGCCGAACACGGCAAG 480
consensus_4952#1      ------------------------------------------------------------
consensus_4952#2      ------------------------------------------------------------
                                                                                  

consensus_4952#0      CACGGCCCCGAACGACACCGACGCCACCGCCACGGCGATGGCGTACATCGTCCCCAGCTC 540
consensus_4952#1      ------------------------------------------------------------
consensus_4952#2      ------------------------------------------------------------
                                                                                  

consensus_4952#0      GGACTTCCCGTCCTCCTCCTCCTCCTCGCCTACCGCCGCGGTGCAGAACTCGATGAACGC 600
consensus_4952#1      ------------------------------------------------------------
consensus_4952#2      ------------------------------------------------------------
                                                                                  

consensus_4952#0      CCACGCGGCGGCTCCGGCGACCACTGGGAAGACGACGGCCGGCAACAGGAGCCCGTGAAG 660
consensus_4952#1      ------------------------------------------------------------
consensus_4952#2      ------------------------------------------------------------
                                                                                  

consensus_4952#0      GATTGTCGCGGCGATCAGCAGCAGCGCCGGCACCAGCATCGCGAGCATGACGACGTTCGC 720
consensus_4952#1      ------------------------------------------------------------
consensus_4952#2      ------------------------------------------------------------
                                                                                  

consensus_4952#0      GATGGCTAGTACAGTCTTCTGCCACCATATCCCCGACGGCGACTGGCGGCGGCGCCGGTG 780
consensus_4952#1      ----------------------------------------GACTTG-GGCGGCGCCGGTG 19
consensus_4952#2      -----------------------------------------------TTTTTTTTTTTTT 13
                                                                                * 

consensus_4952#0      AACTTCACTGTTGGAC--A-GCAGCCTGCAAAGGAGCAGCGCC-AAGATTC---CGGCCA 833
consensus_4952#1      AACTTCACTGTTGGAC--AAGCAGCCTGCAAAGGAGCAGCGCCCAAGATTC---CGGCCA 74
consensus_4952#2      CTCCTCCCTAATCCACCAAATTAGTTTCTACAACATTAATTAATAACTTCCGAATGAACA 73
                        * ** **  *  **  *   **  *  * *  *  *      **  * *    *  **

consensus_4952#0      GACCGGAACCAAGCATGAAGAAGATCGACACCT--TGGC-GTATGAATACTGACC-ACCC 889
consensus_4952#1      GACCGGAACCAAGCATGAAGAAGATCGACACCT--TGGC-GTATGAATACTGACCCACCC 131
consensus_4952#2      TGTCTCGATTATTTATTTACAAGCATCACAGTTGATGACCGTGAGAGAGTACATTAACAT 133
                         *   *  *   **  * ***    ***  *  ** * **  **      *   **  

consensus_4952#0      AATTTCTCTGTC-TTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAGAGAATGATGT 948
consensus_4952#1      AATTTCTCTGTC-TTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAGAGAATGATGT 190
consensus_4952#2      TATATTCCTGCCATCACAGTACTAACCCCTTNTTTCTTGGGTTCAATTTAGGTTTCTTTT 193
                       ** *  *** * *     **    **       ***    *  **     *  *  * *

consensus_4952#0      GGTCACCAAAGATAAGTGAAAGACACCAACAAGGATGGAAGGGACCAATGAAATGGGCAG 1008
consensus_4952#1      GGTCACCAAAGATAAGGTGAGCTGATTTGCACTCTTT--AGTGCTTTCTTCAGAGCTTTA 248
consensus_4952#2      CCCCCCTTTTGTATCGATTTGATATCTTGAAATGCATCGCATGCCTCCTTCAGATCACAG 253
                         * *    *    *              *           *     *  *        

consensus_4952#0      GAAGTAATAAGCCTTAGGAAGCAGAGAACAAGTGATGGAAATAAATGACAAAATAAGGGA 1068
consensus_4952#1      CTCTCTTCAGGCCTTACATCTCTCACATCGAATT-TGCCATTATAT-ATGAAGTGAAAGA 306
consensus_4952#2      AGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACT-TACTAGCCGAG-ACTAAGTGTTCGA 311
                                 * *       *             *   *    *  *  ** *    **

consensus_4952#0      GGATATGGAGGTAGCCAAGAGGACTATGGAAAGTTTCAGCTGGTTGATGGCGCTGATGAT 1128
consensus_4952#1      CACCAACAAGGATG--GAAGGGACCAATGAAATGGGCAGGAAGTAATAAGCCTTAGGAAG 364
consensus_4952#2      CAT--GCGCGCACT---GGTGAACTGCTGCCATGGCGCGGATCACGTACGCGTACTCCAT 366
                               *          * **    *  *      *          **       * 

consensus_4952#0      GTGCTCTGGCTT-GATTGTCATCAACTTCAGGGTGTGGAACATGAGGGAAATTGCGGTGA 1187
consensus_4952#1      CAGAGAACAAGT-GATGGAAATAAATGACAAAATAAGGGAGGATATGGAGGTAGCCAAGA 423
consensus_4952#2      CATGCGCCGATTTGATAGAAGAGAGCG----AGCGCGGCGAGA-ACGAGGGTGCCCAAGC 421
                                 * *** *     *            **      * *    *  *   * 

consensus_4952#0      CAAAGGCTGTGAATGCAAAGGAGGAGGCAAATTTCAGTCCGAGTGGAAGTTTGAGTGCAT 1247
consensus_4952#1      GGACTATGGAAAGTTT-------------------------------------------- 439
consensus_4952#2      CGN--------------------------------------------------------- 424
                                                                                  

consensus_4952#0      CTCCACGAAGAAATAGAATGTCAATCAGGGGGACTGTAGAGATTGTGACGAGGAGCAATG 1307
consensus_4952#1      ------------------------------------------------------------
consensus_4952#2      ------------------------------------------------------------
                                                                                  

consensus_4952#0      CAAATTTCAGATTCTTGGGGGCAAA 1332
consensus_4952#1      -------------------------
consensus_4952#2      -------------------------