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Oryza sativa
cluster # 4955 cluster # 4955       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4955#0 length = 2026 sequences # 3  

consensusID : consensus_4955#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2026
fasta sequence
                              [TACATTATTCCCCAGCCCGCACGCGCGTACGCCAACGGCCCAGCGACTGAACGGCCCAGTGGATGTCCCCATCTTAGCAGAGAAAGTCATTGTGTGTGTGACTGTAACTACCTACTGCTGGAAGGACAGACGTAACTAACCACCGTTTCCCCTGCTTTTTTAGCGGCTCCGAACGATCCAAATTTCAGAAGCAGCTTCACCACACGAAGCAGGAATCACCAAATCCAGAGCAGCAAAAGAGACAAACGGAACCAAAAAAAAACAGGGTTGGATCGATCAGTGGTCACACGGTGGCATCATGGTGGTGGGGAGGCCGTCGTCATCATCGGTGGCTCGTGCGGTCGTGCTCCTCGCGGCGGCCATGCTGCTGTCCACGCTGAGCCCGTGCTGCTGCGCGTCGGCGGGCGGCGGCGGCGGCGCGCGGCGGCGTGAGAAGCAGCAGCAGCTGCACCCGGTGATCCTGATCCCCGGCGCCGGCGGGAACCAGCTGGAGGCGCGGCTGACGGAGGAGTACGCCCCGTCGAGCCTCGCGTGCCGCGTGTGGCCCGTGGTGCGCGGCCGCGGCGGGTGGTTCCGCCTCTGGTTCGACCCGTCCGTCGTCGTGGCGCCGCTCACCAGGTGCTTCGCCGACCGGATGACCCTCTTCTACGACTCCGTCGCCGACGACTACCGCAACGCTCCCGGCGTCGAGACCAGGGTCTCCGACTTCGGCTCCACCTCCACCCTCCGCTACCTCGACCCCAACCTCAAGTTGCTAACGGGGTACATGAACGTGTTGGCGAGCACGCTGGAGAAGGCAGGGTACGAGGAAGGGTTCGACCTGTTCGGCGCGCCGTACGACTTCCGGTACGGGCTGGCCGGGCCGGGGCACCCGTCGCGTGTGGGCAGCGCGTACCTGGAGCGGCTGAGGAAGCTGGTGGAGTCGGCGTGCGCGGCCAACGGCGGGAGGCCGGCGATCCTCGTGGCGCACAGCCTGGGCGGGCTGTACGCGCTGCAGATGGTGGCGCGGAGCCCCCCCGCGTGGCGCGCCGCGAACGTGAAGCGGCTGGTGACGCTGTCAGCGCCGTGGGGCGGGTCGGTGCAGGAGATGCTCACCTTCGCGTCGGGCAACACCCTCGGCGTGCCGTTCGTCGACGCGTCGCTCATCCGCGACGAGCAGCGCACCGCCGAGAGCAACCTGTGGCTGCTGCCGGCGCCGCGGGTGTTCGGGAACACCACGCTGGTGGTGTCGCGGCACCACAACCGGTCCTACTCCGCCAAGAACATGACGCAGTTCCTCCGGGACATCGGGTTCGCCGAAGGGGTGGAGCCGTACCGGGAGCGGATACGGCCGCTCGTCGAGGTGCTGCCGGAGCCCGGGGTGCCGGTGACGTGCCTCGTCGGCACGGGCGTCGACACCGTGGAGAGCCTCGTGTACGGGGAGGGCGGGTTCGAGGCCGGGCCGGAGAAGGTGGTGTACGGCGACGGCGACGGGACGGTCAACCTCGACAGCCTCGTCGGGCCGATCAAGGCGTGGTCCGACTCGCCGGAGCAGGTGGTGGAGGTGGTCGAGCTGCCCGAGGTGTCGCACTCCGGCATCCTCAAGGACAAGAGCGCGCTCGACCAGATCTTGAGGATCATCGACGCCATCAATCTGAACGCCACGACCTCAAGCTCCTCCATCAATCGATCGTCTCAGGATGTTTTGTACAATTAGATTATATTGCTCGCTTCAAGATTTGCTTCTTTTAATCGTTGAGAATTTGCAAGGGGGTACTCCCTCCTCCGTTTCACAATGTAAGTCATTCTATCATTTTCTATATTTATATTGATGTTAATGAATCTAGACATATATCTATTTAGATTCGTTAACATTAATATGAATGTGGAAAATGCTAGAATGACTTACATTGTGAAACGGATAAAGTAGTTAGCTACCTATAGTGGCCGGTCAAGTGCATG-TTTTTTGCACGTTAACAAGCCAATTAAGGCAACAATAAGAGCAATTAAAATGTGTTCCTTTCGTAATAGTACTATCAGTATCATA]

[+] EMBL AK071679             [TACATTATTCCCCAGCCCGCACGCGCGTACGCCAACGGCCCAGCGACTGAACGGCCCAGTGGATGTCCCCATCTTAGCAGAGAAAGTCATTGTGTGTGTGACTGTAACTACCTACTGCTGGAAGGACAGACGTAACTAACCACCGTTTCCCCTGCTTTTTTAGCGGCTCCGAACGATCCAAATTTCAGAAGCAGCTTCACCACACGAAGCAGGAATCACCAAATCCAGAGCAGCAAAAGAGACAAACGGAACCAAAAAAAAACAGGGTTGGATCGATCAGTGGTCACACGGTGGCATCATGGTGGTGGGGAGGCCGTCGTCATCATCGGTGGCTCGTGCGGTCGTGCTCCTCGCGGCGGCCATGCTGCTGTCCACGCTGAGCCCGTGCTGCTGCGCGTCGGCGGGCGGCGGCGGCGGCGCGCGGCGGCGTGAGAAGCAGCAGCAGCTGCACCCGGTGATCCTGATCCCCGGCGCCGGCGGGAACCAGCTGGAGGCGCGGCTGACGGAGGAGTACGCCCCGTCGAGCCTCGCGTGCCGCGTGTGGCCCGTGGTGCGCGGCCGCGGCGGGTGGTTCCGCCTCTGGTTCGACCCGTCCGTCGTCGTGGCGCCGCTCACCAGGTGCTTCGCCGACCGGATGACCCTCTTCTACGACTCCGTCGCCGACGACTACCGCAACGCTCCCGGCGTCGAGACCAGGGTCTCCGACTTCGGCTCCACCTCCACCCTCCGCTACCTCGACCCCAACCTCAAGTTGCTAACGGGGTACATGAACGTGTTGGCGAGCACGCTGGAGAAGGCAGGGTACGAGGAAGGGTTCGACCTGTTCGGCGCGCCGTACGACTTCCGGTACGGGCTGGCCGGGCCGGGGCACCCGTCGCGTGTGGGCAGCGCGTACCTGGAGCGGCTGAGGAAGCTGGTGGAGTCGGCGTGCGCGGCCAACGGCGGGAGGCCGGCGATCCTCGTGGCGCACAGCCTGGGCGGGCTGTACGCGCTGCAGATGGTGGCGCGGAGCCCCCCCGCGTGGCGCGCCGCGAACGTGAAGCGGCTGGTGACGCTGTCAGCGCCGTGGGGCGGGTCGGTGCAGGAGATGCTCACCTTCGCGTCGGGCAACACCCTCGGCGTGCCGTTCGTCGACGCGTCGCTCATCCGCGACGAGCAGCGCACCGCCGAGAGCAACCTGTGGCTGCTGCCGGCGCCGCGGGTGTTCGGGAACACCACGCTGGTGGTGTCGCGGCACCACAACCGGTCCTACTCCGCCAAGAACATGACGCAGTTCCTCCGGGACATCGGGTTCGCCGAAGGGGTGGAGCCGTACCGGGAGCGGATACGGCCGCTCGTCGAGGTGCTGCCGGAGCCCGGGGTGCCGGTGACGTGCCTCGTCGGCACGGGCGTCGACACCGTGGAGAGCCTCGTGTACGGGGAGGGCGGGTTCGAGGCCGGGCCGGAGAAGGTGGTGTACGGCGACGGCGACGGGACGGTCAACCTCGACAGCCTCGTCGGGCCGATCAAGGCGTGGTCCGACTCGCCGGAGCAGGTGGTGGAGGTGGTCGAGCTGCCCGAGGTGTCGCACTCCGGCATCCTCAAGGACAAGAGCGCGCTCGACCAGATCTTGAGGATCATCGACGCCATCAATCTGAACGCCACGACCTCAAGCTCCTCCATCAATCGATCGTCTCAGGATGTTTTGTACAATTAGATTATATTGCTCGCTTCAAGATTTGCTTCTTTTAATCGTTGAGAATTTGCAAGGGGGTACTCCCTCCTCCGTTTCACAATGTAAGTCATTCTATCATTTTCTATATTTATATTGATGTTAATGAATCTAGACATATATCTATTTAGATTCGTTAACATTAATATGAATGTGGAAAATGCTAGAATGACTTACATTGTGAAACGGATAAAGTAGTTAGCTACCTATAGTGGCCGGTCAAGTGCATG TTTTTTGCACGTTAACAAGCCAATTAAGGCAACAATAAGAGCAATTAAAATGTGTTCCTTTCGTAATAGTACTATCAGTATCATA]
[+] EMBL CB618347             [                                                                                                                                                                                                                                                                                                                                                           TCCTCGCGGCGGCCATGCTGCTGTCCACGCTGAACCCGTGCTGCTGCGCGTCGGTGGGCGGCGGCGGCGGCGCGCGGCGGCGTGAGAAGCAGCAGCAGCTGCACCCGGTGATCCTGATCCCCGGCGCCGGCGGGAACCAGCTGGAGGCGCGGCTGACGGAGGAGTACGCCCCGTCGAGCCTCGCGTGCCGCGTGTGGCCCGTGGTGCGCGGCCGCGGCGGGTGGTTCCGCCTCTGGTTCGACCCGTCCGTCGTCGTGGCGCCGCTCACCAGGTGCTTCGCCGACCGGATGACCCTCTTCTACGACTCCGTCGCCGACGACTACCGCAACGCTCCCGGCGTCGAGACCAGGGTCTCCGACTTCGGCTCCACCTCCACCCTCCGCTACCTCGACCCCAACCTCAAGTTGCTAACGGGGTACATGAACGTGTTGGCGAGCACGCTGGAGAAGGCAGGGTACGAGGAAGGGTTCGACCTGTTCGGCGCGCCGTACGACTTCCGGTACGGGCTGGCCGGGCCGGGGCACCCGTCGCGTGTGGGCAGCGCGTACCTGGAGCGGCTGAGGAAGCTGGTGGAGTCGGCGTGCGCGGCCAACGGCGGGAGGCCGGCGATCCTCGTGGCGCACAGCCTGGGCGGGCTGTACACGCTGCAGATGGTGGCGCGGAGCCCCCCCGCGTGGCGCGCCGCGAACGTGAAGCGGCTGGTGACGCTGTCCGCGCCGTGGGGCGGGTCGGTGCAGGAGATGCTCACCTTCGCGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB618348             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CGGCCGCTCGTCGAGGTGCTGCCGGAGCCCGGGGTACCGGTGACGTGCCTCGTCGGCACGGGCGTCGACACCGTGGAGAGCCTCGTGTACGGGGAGGGCGGGTTCGAGGCCGGGCCGGAGAAGGTGGTGTACGGCGACGGCGACGGGACGGTCAACCTCGACAGCCTCGTCGGGCCGATCAAGGCGTGGTCCGACTCGCCGGAGCAGGTGGTGGAGGTGGTCGAGCTGCCCGAGGTGTCGCACTCCGGCATCCTCAAGGACAAGAGCGCGCTCGACCAGATCTTGAGGATCATCGACGCCATCAATCTGAACGCCACGACCTCGAGCTCCTCCATCAATCGATCGTCTCAGGATGTTTTGTACAATTAGATTATATTGCTCGCTTCAAGATTTGCTTCTTTTAATCGTTGAGAATTTGCAAGGGGGTACTCCCTCCTCCGTTTCACAATGTAAGTCATTCTATCATTTTCTATATTTATATTGATGTTAATGAATCTAGACATATATCTATTTAGATTCGTTAAGATTAATACGAATATGGAAAATGCTAGAATGACTTATATTGTGAAACGGATGAAGTAGTTAGCTACCTATAGTGGCCGGTCAAGTGCATGTTTTTTTGCACGTTGACAAGCCAATTAAGGCAACAATAAGGGCAATTAAAATGTGTTCCTTTCGTAATAGTACTATCAGTATCA  ]


>consensus_4955#0 TACATTATTCCCCAGCCCGCACGCGCGTACGCCAACGGCCCAGCGACTGAACGGCCCAGT GGATGTCCCCATCTTAGCAGAGAAAGTCATTGTGTGTGTGACTGTAACTACCTACTGCTG GAAGGACAGACGTAACTAACCACCGTTTCCCCTGCTTTTTTAGCGGCTCCGAACGATCCA AATTTCAGAAGCAGCTTCACCACACGAAGCAGGAATCACCAAATCCAGAGCAGCAAAAGA GACAAACGGAACCAAAAAAAAACAGGGTTGGATCGATCAGTGGTCACACGGTGGCATCAT GGTGGTGGGGAGGCCGTCGTCATCATCGGTGGCTCGTGCGGTCGTGCTCCTCGCGGCGGC CATGCTGCTGTCCACGCTGAGCCCGTGCTGCTGCGCGTCGGCGGGCGGCGGCGGCGGCGC GCGGCGGCGTGAGAAGCAGCAGCAGCTGCACCCGGTGATCCTGATCCCCGGCGCCGGCGG GAACCAGCTGGAGGCGCGGCTGACGGAGGAGTACGCCCCGTCGAGCCTCGCGTGCCGCGT GTGGCCCGTGGTGCGCGGCCGCGGCGGGTGGTTCCGCCTCTGGTTCGACCCGTCCGTCGT CGTGGCGCCGCTCACCAGGTGCTTCGCCGACCGGATGACCCTCTTCTACGACTCCGTCGC CGACGACTACCGCAACGCTCCCGGCGTCGAGACCAGGGTCTCCGACTTCGGCTCCACCTC CACCCTCCGCTACCTCGACCCCAACCTCAAGTTGCTAACGGGGTACATGAACGTGTTGGC GAGCACGCTGGAGAAGGCAGGGTACGAGGAAGGGTTCGACCTGTTCGGCGCGCCGTACGA CTTCCGGTACGGGCTGGCCGGGCCGGGGCACCCGTCGCGTGTGGGCAGCGCGTACCTGGA GCGGCTGAGGAAGCTGGTGGAGTCGGCGTGCGCGGCCAACGGCGGGAGGCCGGCGATCCT CGTGGCGCACAGCCTGGGCGGGCTGTACGCGCTGCAGATGGTGGCGCGGAGCCCCCCCGC GTGGCGCGCCGCGAACGTGAAGCGGCTGGTGACGCTGTCAGCGCCGTGGGGCGGGTCGGT GCAGGAGATGCTCACCTTCGCGTCGGGCAACACCCTCGGCGTGCCGTTCGTCGACGCGTC GCTCATCCGCGACGAGCAGCGCACCGCCGAGAGCAACCTGTGGCTGCTGCCGGCGCCGCG GGTGTTCGGGAACACCACGCTGGTGGTGTCGCGGCACCACAACCGGTCCTACTCCGCCAA GAACATGACGCAGTTCCTCCGGGACATCGGGTTCGCCGAAGGGGTGGAGCCGTACCGGGA GCGGATACGGCCGCTCGTCGAGGTGCTGCCGGAGCCCGGGGTGCCGGTGACGTGCCTCGT CGGCACGGGCGTCGACACCGTGGAGAGCCTCGTGTACGGGGAGGGCGGGTTCGAGGCCGG GCCGGAGAAGGTGGTGTACGGCGACGGCGACGGGACGGTCAACCTCGACAGCCTCGTCGG GCCGATCAAGGCGTGGTCCGACTCGCCGGAGCAGGTGGTGGAGGTGGTCGAGCTGCCCGA GGTGTCGCACTCCGGCATCCTCAAGGACAAGAGCGCGCTCGACCAGATCTTGAGGATCAT CGACGCCATCAATCTGAACGCCACGACCTCAAGCTCCTCCATCAATCGATCGTCTCAGGA TGTTTTGTACAATTAGATTATATTGCTCGCTTCAAGATTTGCTTCTTTTAATCGTTGAGA ATTTGCAAGGGGGTACTCCCTCCTCCGTTTCACAATGTAAGTCATTCTATCATTTTCTAT ATTTATATTGATGTTAATGAATCTAGACATATATCTATTTAGATTCGTTAACATTAATAT GAATGTGGAAAATGCTAGAATGACTTACATTGTGAAACGGATAAAGTAGTTAGCTACCTA TAGTGGCCGGTCAAGTGCATGTTTTTTGCACGTTAACAAGCCAATTAAGGCAACAATAAG AGCAATTAAAATGTGTTCCTTTCGTAATAGTACTATCAGTATCATA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)