|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4957#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2003 fasta sequence
[CACCAGGAGCCGATGAAGGACGTAGGAGCCTGCGATAAGCCTCGAGGAGCTGGCAACCGAGCTGTGATTCGAGGATTTCCGAATGGGGAAACCCCGCCGGGTTCATTCCCGGTGACCCGCGCCTGAATATATAGGGCGTGTGGAGGGAACGTGGGGAAGTGAAACATCTCAGTACCCACAGGAAGAGAAAACAACAGTGATTCCGTGAGTAGTGGCGAGCGAAAGCGGAACAGGCTAAACCGATTGCGTGTTCAAGCCGGCAGGCGTTGCGTGGTCGGGGTCGTGGGACCTTTCTGACAGGTCTGCCGATCTGTCGAGGAGTGAGAAAGTCGCGTCATAGTCGAAGGGTCTTGAATGGCCCGGCATAGAGGGTGGTACCCCCGTAGACGAAATGGCGTGGCCTCCTGAGGGTGTTCCCAAGTAGCACGGGGCCCGAGAAATCCCGTGTGAATCTGCCAGGACCACCTGGTAAGCCTAAATACTCCCTGGTGACCGATAGCGGACAAGTACCGTGAGGGAAAGGTGAAAAGTACCCCGGGAGGGGAGTGAAATAGTACCTGAAACCGTGTGCCTACAATCCGTCGGAGCCTTACGGGGTGACGGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGTGGTATGTGGCGAGGTTAACCCGTGTGGGGAAGCCGTAGCGAAAGCGAGTCCGAATAGGGCGTTTGAGTCGCATGCTCTAGACCCGAAGCGGAGTGATCTACCCATAGCCAGGTTGAAGCGCGGGTAAGACCGCGTGGAGGACCGAACCCACCAGGGTTGAAAACCTGGGGGATGAGCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCCGTGATAGCTGGTTCTCCCCGAAATGCATTTAGGTGCAGCGTCACGTGTTTCTTGCCGGAGGTAGAGCTACTGGATGGCCGATGGGCCCTACAAGGTTACTGACGTCAGCCAAACTCCAAATGCCGGTAAGTGAGAGCGTGGCAGTGAGACTGCGGGGGATAAGCTCCGTAGTCGAGAGGGAAACAGCCCAGAACACCAGCTAAGGCCCCCAAGCGTGTGCTAAGTGGGAAAGGATGTGGAGTTGCACAGACAACCAGGAGGTTGGCTTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGGTCAAGTGATTCCGCGCCGACAATGTAGCGGGGCTCAAGCACACCGCCGAAGCTGTGTCATTCACGCATGTGCCAGGTCTTCGGATCCAGGCGTGTGGATGGGTAGGGGAGCGTCGTGTGGCGAGTGAAGCGGCGGGGTGACCCAGTCGTGGACGCCACACGAGTGAGAATGCAGGCATGAGTAGCGAAAGACGGGTGAGAAACCCGTCCGCCGAATGACCAAGGGTTCCAGGGCCAGGCTAATCCGCCCTGGGTAAGTCGGGACCTAAGGCGAGGCCGACAGGCGTAGTCGATGGACAACGGGTTGATATTCCCGTACCGGCGAAGAACCGCCCATATCGAACCCGGTGATGCTAACCACCTGAAACCTGAGTTCCCTTCGGGGGGCTTGGGCGGAGCGTGGGATCCGATCCGGTAGTAGGTAAGCGATGGTGTGACGCAGGAAGGTAGCCACCGCGTGGCGATGGTAGTCCACGTCCAAGGGTGTAGGGCGAGGTGTAGGCAAATCCGCACCTCTCACTTCAATGTGGAGTCTGAGACCTGATGGTGACCGCATCAGCGGGAAGCAGGGTGATCCTATGCTGCCAAGAAAAGCATCTAGCGAGGTTCGAGCCGCCCGTACCCCAAACCGACTCAGGTGGTCAGGTAGAGAATACCAAGGCGATCGAGTGAATCGTGGTTAAGGAACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGGGGGCCTGAGGGGTGAAGCCGCTTGCCGGCTAGCTCTTGAGGGCCGCAGAGACCAGGGAGAAGCGACTGTTTACTAAAAACACAGGTCCGTGCTAAGTCGCAAGACGATGTATACGGACTGACGCCTGC]
[+] EMBL AK109086 [CACCAGGAGCCGATGAAGGACGTAGGAGCCTGCGATAAGCCTCGAGGAGCTGGCAACCGAGCTGTGATTCGAGGATTTCCGAATGGGGAAACCCCGCCGGGTTCATTCCCGGTGACCCGCGCCTGAATATATAGGGCGTGTGGAGGGAACGTGGGGAAGTGAAACATCTCAGTACCCACAGGAAGAGAAAACAACAGTGATTCCGTGAGTAGTGGCGAGCGAAAGCGGAACAGGCTAAACCGATTGCGTGTTCAAGCCGGCAGGCGTTGCGTGGTCGGGGTCGTGGGACCTTTCTGACAGGTCTGCCGATCTGTCGAGGAGTGAGAAAGTCGCGTCATAGTCGAAGGGTCTTGAATGGCCCGGCATAGAGGGTGGTACCCCCGTAGACGAAATGGCGTGGCCTCCTGAGGGTGTTCCCAAGTAGCACGGGGCCCGAGAAATCCCGTGTGAATCTGCCAGGACCACCTGGTAAGCCTAAATACTCCCTGGTGACCGATAGCGGACAAGTACCGTGAGGGAAAGGTGAAAAGTACCCCGGGAGGGGAGTGAAATAGTACCTGAAACCGTGTGCCTACAATCCGTCGGAGCCTTACGGGGTGACGGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGTGGTATGTGGCGAGGTTAACCCGTGTGGGGAAGCCGTAGCGAAAGCGAGTCCGAATAGGGCGTTTGAGTCGCATGCTCTAGACCCGAAGCGGAGTGATCTACCCATAGCCAGGTTGAAGCGCGGGTAAGACCGCGTGGAGGACCGAACCCACCAGGGTTGAAAACCTGGGGGATGAGCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCCGTGATAGCTGGTTCTCCCCGAAATGCATTTAGGTGCAGCGTCACGTGTTTCTTGCCGGAGGTAGAGCTACTGGATGGCCGATGGGCCCTACAAGGTTACTGACGTCAGCCAAACTCCAAATGCCGGTAAGTGAGAGCGTGGCAGTGAGACTGCGGGGGATAAGCTCCGTAGTCGAGAGGGAAACAGCCCAGAACACCAGCTAAGGCCCCCAAGCGTGTGCTAAGTGGGAAAGGATGTGGAGTTGCACAGACAACCAGGAGGTTGGCTTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGGTCAAGTGATTCCGCGCCGACAATGTAGCGGGGCTCAAGCACACCGCCGAAGCTGTGTCATTCACGCATGTGCCAGGTCTTCGGATCCAGGCGTGTGGATGGGTAGGGGAGCGTCGTGTGGCGAGTGAAGCGGCGGGGTGACCCAGTCGTGGACGCCACACGAGTGAGAATGCAGGCATGAGTAGCGAAAGACGGGTGAGAAACCCGTCCGCCGAATGACCAAGGGTTCCAGGGCCAGGCTAATCCGCCCTGGGTAAGTCGGGACCTAAGGCGAGGCCGACAGGCGTAGTCGATGGACAACGGGTTGATATTCCCGTACCGGCGAAGAACCGCCCATATCGAACCCGGTGATGCTAACCACCTGAAACCTGAGTTCCCTTCGGGGGGCTTGGGCGGAGCGTGGGATCCGATCCGGTAGTAGGTAAGCGATGGTGTGACGCAGGAAGGTAGCCACCGCGTGGCGATGGTAGTCCACGTCCAAGGGTGTAGGGCGAGGTGTAGGCAAATCCGCACCTCTCACTTCAATGTGGAGTCTGAGACCTGATGGTGACCGCATCAGCGGGAAGCAGGGTGATCCTATGCTGCCAAGAAAAGCATCTAGCGAGGTTCGAGCCGCCCGTACCCCAAACCGACTCAGGTGGTCAGGTAGAGAATACCAAGGCGATCGAGTGAATCGTGGTTAAGGAACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGGGGGCCTGAGGGGTGAAGCCGCTTGCCGGCTAGCTCTTGAGGGCCGCAGAGACCAGGGAGAAGCGACTGTTTACTAAAAACACAGGTCCGTGCTAAGTCGCAAGACGATGTATACGGACTGACGCCTGC]
consensusID : consensus_4957#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence
[CCCGTGAGGGGCAGCCGTAGCGAAAGCGAGTTCGAATAGAGCGATTCAGTCGCATGCCCTAGACCCGAAGCGAAGTGATCTATCCATGGCCAGGTTGAAGCGACGGTNAGACGTCGTGGAGGACCGAACCCACTTGGGTTGAAAACCGAGGGGATGAGCTGTGGATAGGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGTTCTCTCCGAAATGCATTTAGGTGCAGCGTTGCGTGTTTCTTGCCGGAGGTAGAGCTACTGGATGGCCGATGGGCCCTACAAGGTTACTGACGTCAGCCAAACTCCGAATGCCGGTNAGTGAGAGCGCAGCAGTGAGACGGTGGGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCAGACTACCGACTAAGGCCCCTAAGCGTGTGCTAAGTGGGAAAGGATGTGGAGTTGCACAGACNACCAGGAGGGTTGGCTTTAAAGCAGCCACCCTTGGAAAGAGTGCGTAATAGCTCACTGGTCAAGTGATTCCGCGCCGACCATGTTACGGGGCTCAAGGACACCGGCCCAAGTCGTAGGATTCGGCAAAAAAAAAAAAAAAACTCGAGNGGGGGGC]
[+] EMBL CA755153 [CCCGTGAGGGGCAGCCGTAGCGAAAGCGAGTTCGAATAGAGCGATTCAGTCGCATGCCCTAGACCCGAAGCGAAGTGATCTATCCATGGCCAGGTTGAAGCGACGGTNAGACGTCGTGGAGGACCGAACCCACTTGGGTTGAAAACCGAGGGGATGAGCTGTGGATAGGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGTTCTCTCCGAAATGCATTTAGGTGCAGCGTTGCGTGTTTCTTGCCGGAGGTAGAGCTACTGGATGGCCGATGGGCCCTACAAGGTTACTGACGTCAGCCAAACTCCGAATGCCGGTNAGTGAGAGCGCAGCAGTGAGACGGTGGGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCAGACTACCGACTAAGGCCCCTAAGCGTGTGCTAAGTGGGAAAGGATGTGGAGTTGCACAGACNACCAGGAGGGTTGGCTTTAAAGCAGCCACCCTTGGAAAGAGTGCGTAATAGCTCACTGGTCAAGTGATTCCGCGCCGACCATGTTACGGGGCTCAAGGACACCGGCCCAAGTCGTAGGATTCGGCAAAAAAAAAAAAAAAACTCGAGNGGGGGGC]
consensusID : consensus_4957#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence
[CGGAGGTAGAGCTACTGGATGGCCGATGGGCCCTACAAGGTTACTGACGTCAGCCAAACTCCGAATGCCGGTAAGTGAGAGCGCAGCAGTGAGACGGTGGGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCAGACTACCGACTAAGGCCCCTAAGCGTGTGCTAAGTGGGAAAGGATGTGGAGTTGCACAGACAACCAGGAGGTTGGCTTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGGTCAAGTGATTCCGAAGAGAANAAAAAAAAAAA]
[+] EMBL CA756190 [CGGAGGTAGAGCTACTGGATGGCCGATGGGCCCTACAAGGTTACTGACGTCAGCCAAACTCCGAATGCCGGTAAGTGAGAGCGCAGCAGTGAGACGGTGGGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCAGACTACCGACTAAGGCCCCTAAGCGTGTGCTAAGTGGGAAAGGATGTGGAGTTGCACAGACAACCAGGAGGTTGGCTTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGGTCAAGTGATTCCGAAGAGAANAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 CACCAGGAGCCGATGAAGGACGTAGGAGCCTGCGATAAGCCTCGAGGAGCTGGCAACCGA 60
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 GCTGTGATTCGAGGATTTCCGAATGGGGAAACCCCGCCGGGTTCATTCCCGGTGACCCGC 120
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 GCCTGAATATATAGGGCGTGTGGAGGGAACGTGGGGAAGTGAAACATCTCAGTACCCACA 180
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 GGAAGAGAAAACAACAGTGATTCCGTGAGTAGTGGCGAGCGAAAGCGGAACAGGCTAAAC 240
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 CGATTGCGTGTTCAAGCCGGCAGGCGTTGCGTGGTCGGGGTCGTGGGACCTTTCTGACAG 300
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 GTCTGCCGATCTGTCGAGGAGTGAGAAAGTCGCGTCATAGTCGAAGGGTCTTGAATGGCC 360
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 CGGCATAGAGGGTGGTACCCCCGTAGACGAAATGGCGTGGCCTCCTGAGGGTGTTCCCAA 420
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 GTAGCACGGGGCCCGAGAAATCCCGTGTGAATCTGCCAGGACCACCTGGTAAGCCTAAAT 480
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 ACTCCCTGGTGACCGATAGCGGACAAGTACCGTGAGGGAAAGGTGAAAAGTACCCCGGGA 540
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 GGGGAGTGAAATAGTACCTGAAACCGTGTGCCTACAATCCGTCGGAGCCTTACGGGGTGA 600
consensus_4957#1 ------------------------------------------------------CCCGTG 6
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 CGGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGTGGTATGTGGCGAGGTTAACCCGTG 660
consensus_4957#1 AGGGGCAGCCGTAGCGAAAGCGAGTTCGAATAGAGCGATTCAGTCGCATGCCCTAGACCC 66
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 TGGGGAAGCCGTAGCGAAAGCGAGTCCGAATAGGGCGTTTGAGTCGCATGCTCTAGACCC 720
consensus_4957#1 GAAGCGAAGTGATCTATCCATGGCCAGGTTGAAGCGACGGTNAGACGTCGTGGAGGACCG 126
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 GAAGCGGAGTGATCTACCCATAGCCAGGTTGAAGCGCGGGTAAGACCGCGTGGAGGACCG 780
consensus_4957#1 AACCCACTTGGGTTGAAAACCGAGGGGATGAGCTGTGGATAGGGGTGAAAGGCCAATCAA 186
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 AACCCACCAGGGTTGAAAACCTGGGGGATGAGCTGTGGGTAGGGGTGAAAGGCCAATCAA 840
consensus_4957#1 ACTTCGTGATAGCTGGTTCTCTCCGAAATGCATTTAGGTGCAGCGTTGCGTGTTTCTTGC 246
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 ACTCCGTGATAGCTGGTTCTCCCCGAAATGCATTTAGGTGCAGCGTCACGTGTTTCTTGC 900
consensus_4957#1 CGGAGGTAGAGCTACTGGATGGCCGATGGGCCCTACAAGGTTACTGACGTCAGCCAAACT 306
consensus_4957#2 CGGAGGTAGAGCTACTGGATGGCCGATGGGCCCTACAAGGTTACTGACGTCAGCCAAACT 60
consensus_4957#0 CGGAGGTAGAGCTACTGGATGGCCGATGGGCCCTACAAGGTTACTGACGTCAGCCAAACT 960
************************************************************
consensus_4957#1 CCGAATGCCGGTNAGTGAGAGCGCAGCAGTGAGACGGTGGGGGATAAGCTTCATCGTCGA 366
consensus_4957#2 CCGAATGCCGGTAAGTGAGAGCGCAGCAGTGAGACGGTGGGGGATAAGCTTCATCGTCGA 120
consensus_4957#0 CCAAATGCCGGTAAGTGAGAGCGTGGCAGTGAGACTGCGGGGGATAAGCTCCGTAGTCGA 1020
** ********* ********** ********** * ************ * * *****
consensus_4957#1 GAGGGAAACAACCCAGACTACCGACTAAGGCCCCTAAGCGTGTGCTAAGTGGGAAAGGAT 426
consensus_4957#2 GAGGGAAACAACCCAGACTACCGACTAAGGCCCCTAAGCGTGTGCTAAGTGGGAAAGGAT 180
consensus_4957#0 GAGGGAAACAGCCCAGAACACCAGCTAAGGCCCCCAAGCGTGTGCTAAGTGGGAAAGGAT 1080
********** ****** *** ********** *************************
consensus_4957#1 GTGGAGTTGCACAGACNACCAGGAGGGTTGGCTTTAAAGCAGCCACCCTTGGAAAGAGTG 486
consensus_4957#2 GTGGAGTTGCACAGACAACCAGGAGG-TTGGCTTAGAAGCAGCCACCCTTG-AAAGAGTG 238
consensus_4957#0 GTGGAGTTGCACAGACAACCAGGAGG-TTGGCTTAGAAGCAGCCACCCTTT-AAAGAGTG 1138
**************** ********* ******* ************** ********
consensus_4957#1 CGTAATAGCTCACTGGTCAAGTGATTCCGCGCCGACCATGTTACGGGGCTCAAGGACACC 546
consensus_4957#2 CGTAATAGCTCACTGGTCAAGTGATTCCGAAGAGAANAAAAAAAAAAA------------ 286
consensus_4957#0 CGTAATAGCTCACTGGTCAAGTGATTCCGCGCCGACAATGTAGCGGGGCTCAAGCACACC 1198
***************************** ** *
consensus_4957#1 GGCCCAAGTCGTAGGATTCGGCAAAAAAAAAAAAA---AAACTCGAGNGGGGGGC----- 598
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 G-CCGAAGCTGTGTCATTCACGCATGTGCCAGGTCTTCGGATCCAGGCGTGTGGATGGGT 1257
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 AGGGGAGCGTCGTGTGGCGAGTGAAGCGGCGGGGTGACCCAGTCGTGGACGCCACACGAG 1317
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 TGAGAATGCAGGCATGAGTAGCGAAAGACGGGTGAGAAACCCGTCCGCCGAATGACCAAG 1377
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 GGTTCCAGGGCCAGGCTAATCCGCCCTGGGTAAGTCGGGACCTAAGGCGAGGCCGACAGG 1437
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 CGTAGTCGATGGACAACGGGTTGATATTCCCGTACCGGCGAAGAACCGCCCATATCGAAC 1497
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 CCGGTGATGCTAACCACCTGAAACCTGAGTTCCCTTCGGGGGGCTTGGGCGGAGCGTGGG 1557
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 ATCCGATCCGGTAGTAGGTAAGCGATGGTGTGACGCAGGAAGGTAGCCACCGCGTGGCGA 1617
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 TGGTAGTCCACGTCCAAGGGTGTAGGGCGAGGTGTAGGCAAATCCGCACCTCTCACTTCA 1677
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 ATGTGGAGTCTGAGACCTGATGGTGACCGCATCAGCGGGAAGCAGGGTGATCCTATGCTG 1737
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 CCAAGAAAAGCATCTAGCGAGGTTCGAGCCGCCCGTACCCCAAACCGACTCAGGTGGTCA 1797
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 GGTAGAGAATACCAAGGCGATCGAGTGAATCGTGGTTAAGGAACTCGGCAAAATGCCCCC 1857
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 GTAACTTCGGGAGAAGGGGGGCCTGAGGGGTGAAGCCGCTTGCCGGCTAGCTCTTGAGGG 1917
consensus_4957#1 ------------------------------------------------------------
consensus_4957#2 ------------------------------------------------------------
consensus_4957#0 CCGCAGAGACCAGGGAGAAGCGACTGTTTACTAAAAACACAGGTCCGTGCTAAGTCGCAA 1977
consensus_4957#1 --------------------------
consensus_4957#2 --------------------------
consensus_4957#0 GACGATGTATACGGACTGACGCCTGC 2003
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||