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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 972 fasta sequence
[GTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTCAAATCTTACCTCCATCTCGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCCTATCGTCGTAGAAGCGGTGACTTTGAAAGATTATGCGGATTGGGTATCCAATCAATTAATCCTCCAAACCAACTAAACCGGGGAAGCTGAAGCGGAAATGCAATTCTCGGGTGAGGGAAGGGGGAAGCTCCAGGAAGGCTTCGCTCGCTCGCTCAAAAAGCTCTAACGCTCGTTTACGGGTGGAGTGCATAAGAAGCCCTTATTGAAGTAGGGCGAGGCCTTACTACACGAGCTCGTAAGTCAAGCACGGAACGAGCCTTGTCTACGAAGCTTCGCTTCATCATCTTGCTTGCTTCTGGCGAAGCTTAACGCACTATAACATAGGCATGCATGATGGTATGGTAGGGTCCAAAGATACTTTTAAGGCCGACCACTACATAGGAGCGATAGGAAGCCAAGCCGTCAAAAGGAAAGGCGAGCAGCCCTTATTGCAATAGCAAACGGCCTACTTATAGCCCTATTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAATGCTGGCAGCTTGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTGGAACCTTTCAAGATTTTGAGACGCTTGTAGCTGATTAGTGATTACCCCTTACCGTCGGTTTTGGGATTTGCCATCCGGTATGGAGTGCACGTGCAGCTTCATCAGATAGAGTCTCCTCGACTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCACTCATATTTATGAAATATTGTCAGCATTCAATGAATCTGTGTTAAACAGGTCATACTAACTAATCTTTAAACG]
[+] EMBL AK108508 [GTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTCAAATCTTACCTCCATCTCGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCCTATCGTCGTAGAAGCGGTGACTTTGAAAGATTATGCGGATTGGGTATCCAATCAATTAATCCTCCAAACCAACTAAACCGGGGAAGCTGAAGCGGAAATGCAATTCTCGGGTGAGGGAAGGGGGAAGCTCCAGGAAGGCTTCGCTCGCTCGCTCAAAAAGCTCTAACGCTCGTTTACGGGTGGAGTGCATAAGAAGCCCTTATTGAAGTAGGGCGAGGCCTTACTACACGAGCTCGTAAGTCAAGCACGGAACGAGCCTTGTCTACGAAGCTTCGCTTCATCATCTTGCTTGCTTCTGGCGAAGCTTAACGCACTATAACATAGGCATGCATGATGGTATGGTAGGGTCCAAAGATACTTTTAAGGCCGACCACTACATAGGAGCGATAGGAAGCCAAGCCGTCAAAAGGAAAGGCGAGCAGCCCTTATTGCAATAGCAAACGGCCTACTTATAGCCCTATTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAATGCTGGCAGCTTGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTGGAACCTTTCAAGATTTTGAGACGCTTGTAGCTGATTAGTGATTACCCCTTACCGTCGGTTTTGGGATTTGCCATCCGGTATGGAGTGCACGTGCAGCTTCATCAGATAGAGTCTCCTCGACTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCACTCATATTTATGAAATATTGTCAGCATTCAATGAATCTGTGTTAAACAGGTCATACTAACTAATCTTTAAACG]
consensusID : consensus_4960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence
[TGCATTCTTTCAGTTGGTTTTTACCCCATTTCTCCATCTTGGTTATACCGGACCATTTTGTTTCATCCAGGTCCGGAACAAGGCTT-CTTATCTT-CTG-CAAGGT-GCGGTCTTG-AGAAGATC-TGCTGGCGGTGCTAGCTTACCCGTT--CAGTAATTT-GAACTTACT-GAACT-GGATCAAATGGTG-CTG-TTGA-CAGTATCTATA-TTTAAACTACTAGCACC-AAAACTGCATGGCAGGGCAAACTTTCAGGTTCTTATATTTGCTTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAAT-GCTGGCAGCTTGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTGGAACCTTTCAAGATTTTGAGACACTTGTAGCTGATTAGTGATTACCCCTTACCGTC-GTTTTGGGATTTCCCATCCGGTATGGAGTGCACGTGCAGCTTCATCAGAT--AGTCTCCTCGACTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCACTCATATTTATGAAATATTGTCAGCATTCAAAAAATCTGTGTTAAACAGGTCATACTAACTAATCTTTAAACGAGTCTATTACAAAAA]
[+] EMBL BM420044 [TGCATTCTTTCAGTTGGTTTTTACCCCATTTCTCCATCTTGGTTATACCGGACCATTTTGTTTCATCCAGGTCCGGAACAAGGCTT CTTATCTT CTG CAAGGT GCGGTCTTG AGAAGATC TGCTGGCGGTGCTAGCTTACCCGTT CAGTAATTT GAACTTACT GAACT GGATCAAATGGTG CTG TTGA CAGTATCTATA TTTAAACTACTAGCACC AAAACTGCATGGCAGGGCAAACTTTCAGGTTCTTATATTTGCTTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAAT GCTGGCAGCTTGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTGGAACCTTTCAAGATTTTGAGACACTTGTAGCTGATTAGTGATTACCCCTTACCGTC GTTTTGGGATTTCCCATCCGGTATGGAGTGCACGTGCAGCTTCATCAGAT AGTCTCCTCGACTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCACTCATATTTATGAAATATTGTCAGCATTCAAAAAA ]
[+] EMBL AU030536 [ CAGGGCTTCCTTNTCTTCCTGCCAAGTTCCCGGTCTTGAAGAAGATCTTGCTGCCGNTGCTAGCTTNCCCCTTTCCANTAATTTGGAACTTACTGGAACTGGGATCAAATGGTGCCTGTTTNACCAGTATCTATATTTTAAACTACTGGCACCAAAAACTGCATGGCNGGGCAAACTTTCAGGTTCTTATATTTGCTTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAATGGCTGGCAGCTTGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTGGANCCTTTCAAGATTTTGAGACACTTGTAGCTGATTAGTGATTACCCCTTACCGTCGGTTTTGGGATTTGCCATCCGGTATGGNGTGCACGTGCAGCTTCATCAGATAGAGTCTCCTCGACTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCACTCATATTTATGAAATATTGTCAGCATTCAATGAATCTGTGTTAAACAGGTCATACTAACTAATCTTTAAACGAGTCTATTACAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4960#0 GTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGT 60
consensus_4960#1 ------------------------------------------------------------
consensus_4960#0 TCAAATCTTACCTCCATCTCGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAG 120
consensus_4960#1 ------------------------------------------------------------
consensus_4960#0 ATTTGTGGAACTAATCATGCCTTTACGCCTATCGTCGTAGAAGCGGTGACTTTGAAAGAT 180
consensus_4960#1 ------------------------------------------------------------
consensus_4960#0 TATGCGGATTGGGTATCCAATCAATTAATCCTCCAAACCAACTAAACCGGGGAAGCTGAA 240
consensus_4960#1 ------------------------------------------------------------
consensus_4960#0 GCGGAAATGCAATTCTCGGGTGAGGGAAGGGGGAAGCTCCAGGAAGGCTTCGCTCGCTCG 300
consensus_4960#1 ------------------------------------------------------------
consensus_4960#0 CTCAAAAAGCTCTAACGCTCGTTTACGGGTGGAGTGCATAAGAAGCCCTTATTGAAGTAG 360
consensus_4960#1 ---------------TGCATTCTTTCAGTTGGTTTTTACCCCATTTCTCCATCTTGGTTA 45
** ** * * *** * * * * ** **
consensus_4960#0 GGCGAGGCCTTACTACACGAGCTCGTAAGTCAAGCACGGAACGAGCCTTGTCTACGAAGC 420
consensus_4960#1 TACCGGACCATTTTGT-----TTCAT---CCAGGTCCGGAACAAGGCTTCTTATCTT--C 95
* * ** * * ** * ** * ****** ** *** * * *
consensus_4960#0 TTCGCTTCATCATCTTGCTTGCTTCTGGCGAAGCTTAACGCACTATAACATAGGCATGCA 480
consensus_4960#1 TGCAAGGTGCGGTCTTGAGAAGATCTGCTGGCGGTGCTAGCTTACCCGTTCAGTAATTTG 155
* * ***** **** * * * ** ** **
consensus_4960#0 TGATGGTATGGTAGGGTCCAAAGATACTTTTAAGGCCGACCACTACATAGGAGCGATAGG 540
consensus_4960#1 AACTTACTGAACTGGATCAAATGGTGCTGTTGA---CAGTATCTATATTTAAACTACTAG 212
* ** ** ** * * ** ** * * *** ** * * * *
consensus_4960#0 AAGCCAAGCCGTCAAAAGGAAAGGCGAGCAGCCCTTATTGCAATAGCAAACGGCCTACTT 600
consensus_4960#1 CACCAAAACTGC---ATGGCAGGGCAAAC--------TTTCAGG-----------TTCTT 250
* * ** * * * ** * *** * * ** ** * ***
consensus_4960#0 ATAGCCCTATTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAATGCTGGCAGCT 660
consensus_4960#1 ATA-TTTGCTTTAGGAATTGTAGGCCATCTTTTGTAGACAGGGGCAAAATGCTGGCAGCT 309
*** ***************************************************
consensus_4960#0 TGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTG 720
consensus_4960#1 TGTTTATGGTATCATGGCTGACAGCACATTTGGCCCATGTATAGCTTGTTCCAGTATGTG 369
************************************************************
consensus_4960#0 GAACCTTTCAAGATTTTGAGACGCTTGTAGCTGATTAGTGATTACCCCTTACCGTCGGTT 780
consensus_4960#1 GAACCTTTCAAGATTTTGAGACACTTGTAGCTGATTAGTGATTACCCCTTACCGTCG-TT 428
********************** ********************************** **
consensus_4960#0 TTGGGATTTGCCATCCGGTATGGAGTGCACGTGCAGCTTCATCAGATAGAGTCTCCTCGA 840
consensus_4960#1 TTGGGATTTCCCATCCGGTATGGAGTGCACGTGCAGCTTCATCAGATA--GTCTCCTCGA 486
********* ************************************** **********
consensus_4960#0 CTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCAC 900
consensus_4960#1 CTGATCGCTGGAATTGGTCAGATTTTGCGTGAAGCGTGGAATTCATCAAATGTTTACCAC 546
************************************************************
consensus_4960#0 TCATATTTATGAAATATTGTCAGCATTCAATGAATCTGTGTTAAACAGGTCATACTAACT 960
consensus_4960#1 TCATATTTATGAAATATTGTCAGCATTCAAAAAATCTGTGTTAAACAGGTCATACTAACT 606
****************************** ****************************
consensus_4960#0 AATCTTTAAACG--------------- 972
consensus_4960#1 AATCTTTAAACGAGTCTATTACAAAAA 633
************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||