These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2051 fasta sequence [CGTCCAGAAACCCAGAAGGCACGCAGCGGCAGCAGCAGCCCACGGCAACCCTAGATCAGCCAGCCATGTCCCGCGCCGTTGACGCCCAGCAGGAGCCCACGGAAGGGCGCCGCTTCTACTCGCCGGATCGCCCCGAGGGCCTCGCCTTCCCCACCTCGTACCGCGCGCTCTACGACCTGCCCACCTCGCCGGAGTGCCTCTTCGAGGAGGACAAGTTCCGGCAGACCCGCACCTGGGGCGAGAACCTCACGTTCTACACCGGCGTCAGCTACCTCGCCGGCGCCACGTCCGGCGCGCTCGTGGGCCTCCGCCGCGCCGCCGCCGAGGCCGAGCGCGGGGAGTCCGCCAAGCTGCGCATCAACCGCGCCCTCAACCAGAGCGGCTCCGTCGGCCGCGCCTTCGGCAACCGGTTCGGCATCGTCGCGATGCTCTTCGCCGGGACCGAGAGCTTCGTCCGCGACCAGCGCGACGGCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGCGCCGGGGCGCTCTACCGCATCGCGTCCGGCCCAAGGTCGATGATCGTCGCCGGCATCCTCGGCGGAGTCCTGTCCGGCGCAGCTGTCGCGGGTAAGCCGATGCTTCAGAGATTCGCGCCGAAGCTATCCGCCAGATTGGATTATTTACGCTGAGTAAAATTTCAGGCTGAATTACTACTCAACATGGTGTGCGCCTGGAGAAGTTTTTATTCGTAGTATCTAGCTAGCAACTCTGATCTCAATTAATAGTTTGTAACTGTTCATATTTGGTGTCCTGCAAATTAATGGACAAAAAAATGCTAATCTTTTCGTTGAGAATCATATTTATACTAATACTATATACACTTTAAAAAATAAAACATAGTGGTGACGGTAACTCCATCCCTAACCGACCAATCGTTAGATCTTGATATGGGTCGGTTCATATACATCACGCACTTCAATCTTGGCAGACACGCCGATTCTTCAACTAATCGTTAGATCTCGGTATCGGATGCATATCCTTCCCACGAAGCTGAGTGCAATTTATTTGCCAGGTTGAACTACTACTCAATGTGGAGTTCCTGCCTCTCCCACGAAGCTGAGTGCAATTTGTTTATCAGGTTGAATTACTACTCAATGTGATCTCAGGAAAAGTTTTTATTCCTAGTATCTATAGGAAAGTGATCTTAATCTCGAGCTTAATCGTCCATGGCCAATGCCGGATTCATAGTTCATATATTTTTCATATTTGTGTTGTTATTCGTGAAGTTTGATTTCACTATATGTTTGCACCTTGTGAAACCTGTTAACGCTAAATTTTAGCGATATGTTAAACAAGCCCTCTCGGCAAGATCATTTGGAAATCCCGCGCGCCGGCGAGATACAAGTTATTCATGTTTCTTGCCGTCCGCAATGCTTGTTTAACAACTGACAACCTGTAGCGGCGAGGTTGGAAGCTCGCGCCAATTTGTCACCTATGCTCCAATGATGGCCAGTCATACTAACACATCTTCCAGGGTTGCCCCTTCTCAACCCTTCTCGCAACAGGTTTGGGTACAGATTCGGACTCGTTTGAGTCTCTCCTGTTCTCCATCGTCTTCGGACTTTCCCAGTTGGTGGCTTACTGCCTAGCACTCCGTTTCCAAGGTCGACCGTGGGACGTTCGACGCCGGAGTCATCCTCGTAACTTGGTAGATCTAGAAAGAGCGCAACATGTGGGTATTCGATGGAACAACCTCGTCGGTCCCTTAGTTGTGTGCAATCATGTGTGATGAGTGGGAAACTTGAAAATCAAAGGCTCTTTAGTTTGTTGAGTATTGCCACAACACCAGTTTCAGAGAGATTTCAACCTATTGTAATTTCTTAATGTTGTAAAGGCGATGTACCGACGCACTGTATTTGCGCTCCCTCTAGAGAGGGTATGTTCGTAAAGTTTTCTCCCTTCTCCTTAATATACATCAGTCGGCATCTTCATCGACCCAACGATAAACAACATCAATCTCTTTATATATTTGTAAGGTTTCAAAAACATGAGTCGGATCGTGTGGTTGTTGTGTA] [+] EMBL AK110845 [CGTCCAGAAACCCAGAAGGCACGCAGCGGCAGCAGCAGCCCACGGCAACCCTAGATCAGCCAGCCATGTCCCGCGCCGTTGACGCCCAGCAGGAGCCCACGGAAGGGCGCCGCTTCTACTCGCCGGATCGCCCCGAGGGCCTCGCCTTCCCCACCTCGTACCGCGCGCTCTACGACCTGCCCACCTCGCCGGAGTGCCTCTTCGAGGAGGACAAGTTCCGGCAGACCCGCACCTGGGGCGAGAACCTCACGTTCTACACCGGCGTCAGCTACCTCGCCGGCGCCACGTCCGGCGCGCTCGTGGGCCTCCGCCGCGCCGCCGCCGAGGCCGAGCGCGGGGAGTCCGCCAAGCTGCGCATCAACCGCGCCCTCAACCAGAGCGGCTCCGTCGGCCGCGCCTTCGGCAACCGGTTCGGCATCGTCGCGATGCTCTTCGCCGGGACCGAGAGCTTCGTCCGCGACCAGCGCGACGGCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGCGCCGGGGCGCTCTACCGCATCGCGTCCGGCCCAAGGTCGATGATCGTCGCCGGCATCCTCGGCGGAGTCCTGTCCGGCGCAGCTGTCGCGGGTAAGCCGATGCTTCAGAGATTCGCGCCGAAGCTATCCGCCAGATTGGATTATTTACGCTGAGTAAAATTTCAGGCTGAATTACTACTCAACATGGTGTGCGCCTGGAGAAGTTTTTATTCGTAGTATCTAGCTAGCAACTCTGATCTCAATTAATAGTTTGTAACTGTTCATATTTGGTGTCCTGCAAATTAATGGACAAAAAAATGCTAATCTTTTCGTTGAGAATCATATTTATACTAATACTATATACACTTTAAAAAATAAAACATAGTGGTGACGGTAACTCCATCCCTAACCGACCAATCGTTAGATCTTGATATGGGTCGGTTCATATACATCACGCACTTCAATCTTGGCAGACACGCCGATTCTTCAACTAATCGTTAGATCTCGGTATCGGATGCATATCCTTCCCACGAAGCTGAGTGCAATTTATTTGCCAGGTTGAACTACTACTCAATGTGGAGTTCCTGCCTCTCCCACGAAGCTGAGTGCAATTTGTTTATCAGGTTGAATTACTACTCAATGTGATCTCAGGAAAAGTTTTTATTCCTAGTATCTATAGGAAAGTGATCTTAATCTCGAGCTTAATCGTCCATGGCCAATGCCGGATTCATAGTTCATATATTTTTCATATTTGTGTTGTTATTCGTGAAGTTTGATTTCACTATATGTTTGCACCTTGTGAAACCTGTTAACGCTAAATTTTAGCGATATGTTAAACAAGCCCTCTCGGCAAGATCATTTGGAAATCCCGCGCGCCGGCGAGATACAAGTTATTCATGTTTCTTGCCGTCCGCAATGCTTGTTTAACAACTGACAACCTGTAGCGGCGAGGTTGGAAGCTCGCGCCAATTTGTCACCTATGCTCCAATGATGGCCAGTCATACTAACACATCTTCCAGGGTTGCCCCTTCTCAACCCTTCTCGCAACAGGTTTGGGTACAGATTCGGACTCGTTTGAGTCTCTCCTGTTCTCCATCGTCTTCGGACTTTCCCAGTTGGTGGCTTACTGCCTAGCACTCCGTTTCCAAGGTCGACCGTGGGACGTTCGACGCCGGAGTCATCCTCGTAACTTGGTAGATCTAGAAAGAGCGCAACATGTGGGTATTCGATGGAACAACCTCGTCGGTCCCTTAGTTGTGTGCAATCATGTGTGATGAGTGGGAAACTTGAAAATCAAAGGCTCTTTAGTTTGTTGAGTATTGCCACAACACCAGTTTCAGAGAGATTTCAACCTATTGTAATTTCTTAATGTTGTAAAGGCGATGTACCGACGCACTGTATTTGCGCTCCCTCTAGAGAGGGTATGTTCGTAAAGTTTTCTCCCTTCTCCTTAATATACATCAGTCGGCATCTTCATCGACCCAACGATAAACAACATCAATCTCTTTATATATTTGTAAGGTTTCAAAAACATGAGTCGGATCGTGTGGTTGTTGTGTA] [+] EMBL AK109266 [ CCAGAAACCCAGAAGGCACGCAGCGGCAGCAGCAGCCCACGGCAACCCTAGATCAGCCAGCCATGTCCCGCGCCGTTGACGCCCAGCAGGAGCCCACGGAAGGGCGCCGCTTCTACTCGCCGGATCGCCCCGAGGGCCTCGCCTTCCCCACCTCGTACCGCGCGCTCTACGACCTGCCCACCTCGCCGGAGTGCCTCTTCGAGGAGGACAAGTTCCGGCAGACCCGCACCTGGGGCGAGAACCTCACGTTCTACACCGGCGTCAGCTACCTCGCCGGCGCCACGTCCGGCGCGCTCGTGGGCCTCCGCCGCGCCGCCGCCGAGGCCGAGCGCGGGGAGTCCGCCAAGCTGCGCATCAACCGCGCCCTCAACCAGAGCGGCTCCGTCGGCCGCGCCTTCGGCAACCGGTTCGGCATCGTCGCGATGCTCTTCGCCGGGACCGAGAGCTTCGTCCGCGACCAGCGCGACGGCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGCGCCGGGGCGCTCTACCGCATCGCGTCCGGCCCAAGGTCGATGATCGTCGCCGGCATCCTCGGCGGAGTCCTGTCCGGCGCAGCTGTCGCGGGTAAGCCGATGCTTCAGAGATTCGCGCCGAAGCTATCCGCCAGATTGGATTATTTACGCTGAGTAAAATTTCAGGCTGAATTACTACTCAACATGGTGTGCGCCTGGAGAAGTTTTTATTCGTAGTATCTAGCTAGCAACTCTGATCTCAATTAATAGTTTGTAACTGTTCATATTTGGTGTCCTGCAAATTAATGGACAAAAAAATGCTAATCTTTTCGTTG ] consensusID : consensus_4963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GGGCGAGCGGGCGAGCGCGACCTCGCTGTCGCCAGCCACCCAGCCTCCACGGTGCCGTGCACCTCCTCAGCGCGACACCGGCGGAGGATGCGGAGGAGCGGCCCACCCGCCAGCCCGCCGCAGGCCGAGCGCAGGGAGTCCGCCAAGCTGCGCATCAACCAGCGCCCTCAACCAGACGGCTCTGTCGGCCGCGCCTTCGGCAGCCGGTTCGGCATCGTTGTGATGCTCTTCACCAGGACCGAGAGCTTCATTCGCGACCAGTGCGACGTCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGCAGCCGGGGCAGCTCTACCGCATCGCGTCCGGCCCAAGGTCGATGATCATCGCCGACATCCTCGGCGGAGTCCTGTCCGGCGCCAGCCGTCGCGGGGAAGCCGATGCTTCAGAGATTCGCACCGAAGCTATCCGCCAGATTGGACTATTTACTTTGAGTAAAATTTCAGGTTAATTACTACTCCAAAAAAAAAA] [+] EMBL BI801501 [GGGCGAGCGGGCGAGCGCGACCTCGCTGTCGCCAGCCACCCAGCCTCCACGGTGCCGTGCACCTCCTCAGCGCGACACCGGCGGAGGATGCGGAGGAGCGGCCCACCCGCCAGCCCGCCGCAGGCCGAGCGCAGGGAGTCCGCCAAGCTGCGCATCAACCAGCGCCCTCAACCAGACGGCTCTGTCGGCCGCGCCTTCGGCAGCCGGTTCGGCATCGTTGTGATGCTCTTCACCAGGACCGAGAGCTTCATTCGCGACCAGTGCGACGTCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGCAGCCGGGGCAGCTCTACCGCATCGCGTCCGGCCCAAGGTCGATGATCATCGCCGACATCCTCGGCGGAGTCCTGTCCGGCGCCAGCCGTCGCGGGGAAGCCGATGCTTCAGAGATTCGCACCGAAGCTATCCGCCAGATTGGACTATTTACTTTGAGTAAAATTTCAGGTTAATTACTACTCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4963#0 CGTCCAGAAACCCAGAAGGCACGCAGCGGCAGCAGCAGCCCACGGCAACCCTAGATCAGC 60 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 CAGCCATGTCCCGCGCCGTTGACGCCCAGCAGGAGCCCACGGAAGGGCGCCGCTTCTACT 120 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 CGCCGGATCGCCCCGAGGGCCTCGCCTTCCCCACCTCGTACCGCGCGCTCTACGACCTGC 180 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 CCACCTCGCCGGAGTGCCTCTTCGAGGAGGACAAGTTCCGGCAGACCCGCACCTGGGG-C 239 consensus_4963#1 ----------------------------GGGCGAG--CGGGCGAGCGCGACCTCGCTGTC 30 ** * ** * *** * ** * * * * consensus_4963#0 GAGAACCTCACGTTCTACACCGGCGTCAGCTACCTCGCCGGCGCCACGTCCGGCGCGCTC 299 consensus_4963#1 GCCAGCCACCCAGCCTCCAC-GGTGCCGTGCACCTCCTCAGCGCGACACCGGCGGAGGAT 89 * * ** * * ** *** ** * * ***** * **** ** * * * * consensus_4963#0 GTGG----GCCTCCGCCGCGCCG--CCGCCG-AGGCCGAGCGCGGGGAGTCCGCCAAGCT 352 consensus_4963#1 GCGGAGGAGCGGCCCACCCGCCAGCCCGCCGCAGGCCGAGCGCAGGGAGTCCGCCAAGCT 149 * ** ** ** * **** ****** *********** **************** consensus_4963#0 GCGCATCAACC-GCGCCCTCAACCAGAGCGGCTCCGTCGGCCGCGCCTTCGGCAACCGGT 411 consensus_4963#1 GCGCATCAACCAGCGCCCTCAACCAGA-CGGCTCTGTCGGCCGCGCCTTCGGCAGCCGGT 208 *********** *************** ****** ******************* ***** consensus_4963#0 TCGGCATCGTCGCGATGCTCTTCGCCGGGACCGAGAGCTTCGTCCGCGACCAGCGCGACG 471 consensus_4963#1 TCGGCATCGTTGTGATGCTCTTCACCAGGACCGAGAGCTTCATTCGCGACCAGTGCGACG 268 ********** * ********** ** ************** * ********* ****** consensus_4963#0 GCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGC-GCCGGGGC-GCTCTACCG 529 consensus_4963#1 TCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGCAGCCGGGGCAGCTCTACCG 328 **************************************** ******** ********* consensus_4963#0 CATCGCGTCCGGCCCAAGGTCGATGATCGTCGCCGGCATCCTCGGCGGAGTCCTGTCCGG 589 consensus_4963#1 CATCGCGTCCGGCCCAAGGTCGATGATCATCGCCGACATCCTCGGCGGAGTCCTGTCCGG 388 **************************** ****** ************************ consensus_4963#0 CGC-AGCTGTCGCGGGTAAGCCGATGCTTCAGAGATTCGCGCCGAAGCTATCCGCCAGAT 648 consensus_4963#1 CGCCAGCCGTCGCGGGGAAGCCGATGCTTCAGAGATTCGCACCGAAGCTATCCGCCAGAT 448 *** *** ******** *********************** ******************* consensus_4963#0 TGGATTATTTACGCTGAGTAAAATTTCAGGCTGAATTACTACTCAACATGGTGTGCGCCT 708 consensus_4963#1 TGGACTATTTACTTTGAGTAAAATTTCAGGTT-AATTACTACTCCAAAAAAAAAA----- 502 **** ******* **************** * *********** * * consensus_4963#0 GGAGAAGTTTTTATTCGTAGTATCTAGCTAGCAACTCTGATCTCAATTAATAGTTTGTAA 768 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 CTGTTCATATTTGGTGTCCTGCAAATTAATGGACAAAAAAATGCTAATCTTTTCGTTGAG 828 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 AATCATATTTATACTAATACTATATACACTTTAAAAAATAAAACATAGTGGTGACGGTAA 888 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 CTCCATCCCTAACCGACCAATCGTTAGATCTTGATATGGGTCGGTTCATATACATCACGC 948 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 ACTTCAATCTTGGCAGACACGCCGATTCTTCAACTAATCGTTAGATCTCGGTATCGGATG 1008 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 CATATCCTTCCCACGAAGCTGAGTGCAATTTATTTGCCAGGTTGAACTACTACTCAATGT 1068 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 GGAGTTCCTGCCTCTCCCACGAAGCTGAGTGCAATTTGTTTATCAGGTTGAATTACTACT 1128 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 CAATGTGATCTCAGGAAAAGTTTTTATTCCTAGTATCTATAGGAAAGTGATCTTAATCTC 1188 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 GAGCTTAATCGTCCATGGCCAATGCCGGATTCATAGTTCATATATTTTTCATATTTGTGT 1248 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 TGTTATTCGTGAAGTTTGATTTCACTATATGTTTGCACCTTGTGAAACCTGTTAACGCTA 1308 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 AATTTTAGCGATATGTTAAACAAGCCCTCTCGGCAAGATCATTTGGAAATCCCGCGCGCC 1368 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 GGCGAGATACAAGTTATTCATGTTTCTTGCCGTCCGCAATGCTTGTTTAACAACTGACAA 1428 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 CCTGTAGCGGCGAGGTTGGAAGCTCGCGCCAATTTGTCACCTATGCTCCAATGATGGCCA 1488 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 GTCATACTAACACATCTTCCAGGGTTGCCCCTTCTCAACCCTTCTCGCAACAGGTTTGGG 1548 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 TACAGATTCGGACTCGTTTGAGTCTCTCCTGTTCTCCATCGTCTTCGGACTTTCCCAGTT 1608 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 GGTGGCTTACTGCCTAGCACTCCGTTTCCAAGGTCGACCGTGGGACGTTCGACGCCGGAG 1668 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 TCATCCTCGTAACTTGGTAGATCTAGAAAGAGCGCAACATGTGGGTATTCGATGGAACAA 1728 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 CCTCGTCGGTCCCTTAGTTGTGTGCAATCATGTGTGATGAGTGGGAAACTTGAAAATCAA 1788 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 AGGCTCTTTAGTTTGTTGAGTATTGCCACAACACCAGTTTCAGAGAGATTTCAACCTATT 1848 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 GTAATTTCTTAATGTTGTAAAGGCGATGTACCGACGCACTGTATTTGCGCTCCCTCTAGA 1908 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 GAGGGTATGTTCGTAAAGTTTTCTCCCTTCTCCTTAATATACATCAGTCGGCATCTTCAT 1968 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 CGACCCAACGATAAACAACATCAATCTCTTTATATATTTGTAAGGTTTCAAAAACATGAG 2028 consensus_4963#1 ------------------------------------------------------------ consensus_4963#0 TCGGATCGTGTGGTTGTTGTGTA 2051 consensus_4963#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||