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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2051 fasta sequence
[CGTCCAGAAACCCAGAAGGCACGCAGCGGCAGCAGCAGCCCACGGCAACCCTAGATCAGCCAGCCATGTCCCGCGCCGTTGACGCCCAGCAGGAGCCCACGGAAGGGCGCCGCTTCTACTCGCCGGATCGCCCCGAGGGCCTCGCCTTCCCCACCTCGTACCGCGCGCTCTACGACCTGCCCACCTCGCCGGAGTGCCTCTTCGAGGAGGACAAGTTCCGGCAGACCCGCACCTGGGGCGAGAACCTCACGTTCTACACCGGCGTCAGCTACCTCGCCGGCGCCACGTCCGGCGCGCTCGTGGGCCTCCGCCGCGCCGCCGCCGAGGCCGAGCGCGGGGAGTCCGCCAAGCTGCGCATCAACCGCGCCCTCAACCAGAGCGGCTCCGTCGGCCGCGCCTTCGGCAACCGGTTCGGCATCGTCGCGATGCTCTTCGCCGGGACCGAGAGCTTCGTCCGCGACCAGCGCGACGGCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGCGCCGGGGCGCTCTACCGCATCGCGTCCGGCCCAAGGTCGATGATCGTCGCCGGCATCCTCGGCGGAGTCCTGTCCGGCGCAGCTGTCGCGGGTAAGCCGATGCTTCAGAGATTCGCGCCGAAGCTATCCGCCAGATTGGATTATTTACGCTGAGTAAAATTTCAGGCTGAATTACTACTCAACATGGTGTGCGCCTGGAGAAGTTTTTATTCGTAGTATCTAGCTAGCAACTCTGATCTCAATTAATAGTTTGTAACTGTTCATATTTGGTGTCCTGCAAATTAATGGACAAAAAAATGCTAATCTTTTCGTTGAGAATCATATTTATACTAATACTATATACACTTTAAAAAATAAAACATAGTGGTGACGGTAACTCCATCCCTAACCGACCAATCGTTAGATCTTGATATGGGTCGGTTCATATACATCACGCACTTCAATCTTGGCAGACACGCCGATTCTTCAACTAATCGTTAGATCTCGGTATCGGATGCATATCCTTCCCACGAAGCTGAGTGCAATTTATTTGCCAGGTTGAACTACTACTCAATGTGGAGTTCCTGCCTCTCCCACGAAGCTGAGTGCAATTTGTTTATCAGGTTGAATTACTACTCAATGTGATCTCAGGAAAAGTTTTTATTCCTAGTATCTATAGGAAAGTGATCTTAATCTCGAGCTTAATCGTCCATGGCCAATGCCGGATTCATAGTTCATATATTTTTCATATTTGTGTTGTTATTCGTGAAGTTTGATTTCACTATATGTTTGCACCTTGTGAAACCTGTTAACGCTAAATTTTAGCGATATGTTAAACAAGCCCTCTCGGCAAGATCATTTGGAAATCCCGCGCGCCGGCGAGATACAAGTTATTCATGTTTCTTGCCGTCCGCAATGCTTGTTTAACAACTGACAACCTGTAGCGGCGAGGTTGGAAGCTCGCGCCAATTTGTCACCTATGCTCCAATGATGGCCAGTCATACTAACACATCTTCCAGGGTTGCCCCTTCTCAACCCTTCTCGCAACAGGTTTGGGTACAGATTCGGACTCGTTTGAGTCTCTCCTGTTCTCCATCGTCTTCGGACTTTCCCAGTTGGTGGCTTACTGCCTAGCACTCCGTTTCCAAGGTCGACCGTGGGACGTTCGACGCCGGAGTCATCCTCGTAACTTGGTAGATCTAGAAAGAGCGCAACATGTGGGTATTCGATGGAACAACCTCGTCGGTCCCTTAGTTGTGTGCAATCATGTGTGATGAGTGGGAAACTTGAAAATCAAAGGCTCTTTAGTTTGTTGAGTATTGCCACAACACCAGTTTCAGAGAGATTTCAACCTATTGTAATTTCTTAATGTTGTAAAGGCGATGTACCGACGCACTGTATTTGCGCTCCCTCTAGAGAGGGTATGTTCGTAAAGTTTTCTCCCTTCTCCTTAATATACATCAGTCGGCATCTTCATCGACCCAACGATAAACAACATCAATCTCTTTATATATTTGTAAGGTTTCAAAAACATGAGTCGGATCGTGTGGTTGTTGTGTA]
[+] EMBL AK110845 [CGTCCAGAAACCCAGAAGGCACGCAGCGGCAGCAGCAGCCCACGGCAACCCTAGATCAGCCAGCCATGTCCCGCGCCGTTGACGCCCAGCAGGAGCCCACGGAAGGGCGCCGCTTCTACTCGCCGGATCGCCCCGAGGGCCTCGCCTTCCCCACCTCGTACCGCGCGCTCTACGACCTGCCCACCTCGCCGGAGTGCCTCTTCGAGGAGGACAAGTTCCGGCAGACCCGCACCTGGGGCGAGAACCTCACGTTCTACACCGGCGTCAGCTACCTCGCCGGCGCCACGTCCGGCGCGCTCGTGGGCCTCCGCCGCGCCGCCGCCGAGGCCGAGCGCGGGGAGTCCGCCAAGCTGCGCATCAACCGCGCCCTCAACCAGAGCGGCTCCGTCGGCCGCGCCTTCGGCAACCGGTTCGGCATCGTCGCGATGCTCTTCGCCGGGACCGAGAGCTTCGTCCGCGACCAGCGCGACGGCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGCGCCGGGGCGCTCTACCGCATCGCGTCCGGCCCAAGGTCGATGATCGTCGCCGGCATCCTCGGCGGAGTCCTGTCCGGCGCAGCTGTCGCGGGTAAGCCGATGCTTCAGAGATTCGCGCCGAAGCTATCCGCCAGATTGGATTATTTACGCTGAGTAAAATTTCAGGCTGAATTACTACTCAACATGGTGTGCGCCTGGAGAAGTTTTTATTCGTAGTATCTAGCTAGCAACTCTGATCTCAATTAATAGTTTGTAACTGTTCATATTTGGTGTCCTGCAAATTAATGGACAAAAAAATGCTAATCTTTTCGTTGAGAATCATATTTATACTAATACTATATACACTTTAAAAAATAAAACATAGTGGTGACGGTAACTCCATCCCTAACCGACCAATCGTTAGATCTTGATATGGGTCGGTTCATATACATCACGCACTTCAATCTTGGCAGACACGCCGATTCTTCAACTAATCGTTAGATCTCGGTATCGGATGCATATCCTTCCCACGAAGCTGAGTGCAATTTATTTGCCAGGTTGAACTACTACTCAATGTGGAGTTCCTGCCTCTCCCACGAAGCTGAGTGCAATTTGTTTATCAGGTTGAATTACTACTCAATGTGATCTCAGGAAAAGTTTTTATTCCTAGTATCTATAGGAAAGTGATCTTAATCTCGAGCTTAATCGTCCATGGCCAATGCCGGATTCATAGTTCATATATTTTTCATATTTGTGTTGTTATTCGTGAAGTTTGATTTCACTATATGTTTGCACCTTGTGAAACCTGTTAACGCTAAATTTTAGCGATATGTTAAACAAGCCCTCTCGGCAAGATCATTTGGAAATCCCGCGCGCCGGCGAGATACAAGTTATTCATGTTTCTTGCCGTCCGCAATGCTTGTTTAACAACTGACAACCTGTAGCGGCGAGGTTGGAAGCTCGCGCCAATTTGTCACCTATGCTCCAATGATGGCCAGTCATACTAACACATCTTCCAGGGTTGCCCCTTCTCAACCCTTCTCGCAACAGGTTTGGGTACAGATTCGGACTCGTTTGAGTCTCTCCTGTTCTCCATCGTCTTCGGACTTTCCCAGTTGGTGGCTTACTGCCTAGCACTCCGTTTCCAAGGTCGACCGTGGGACGTTCGACGCCGGAGTCATCCTCGTAACTTGGTAGATCTAGAAAGAGCGCAACATGTGGGTATTCGATGGAACAACCTCGTCGGTCCCTTAGTTGTGTGCAATCATGTGTGATGAGTGGGAAACTTGAAAATCAAAGGCTCTTTAGTTTGTTGAGTATTGCCACAACACCAGTTTCAGAGAGATTTCAACCTATTGTAATTTCTTAATGTTGTAAAGGCGATGTACCGACGCACTGTATTTGCGCTCCCTCTAGAGAGGGTATGTTCGTAAAGTTTTCTCCCTTCTCCTTAATATACATCAGTCGGCATCTTCATCGACCCAACGATAAACAACATCAATCTCTTTATATATTTGTAAGGTTTCAAAAACATGAGTCGGATCGTGTGGTTGTTGTGTA]
[+] EMBL AK109266 [ CCAGAAACCCAGAAGGCACGCAGCGGCAGCAGCAGCCCACGGCAACCCTAGATCAGCCAGCCATGTCCCGCGCCGTTGACGCCCAGCAGGAGCCCACGGAAGGGCGCCGCTTCTACTCGCCGGATCGCCCCGAGGGCCTCGCCTTCCCCACCTCGTACCGCGCGCTCTACGACCTGCCCACCTCGCCGGAGTGCCTCTTCGAGGAGGACAAGTTCCGGCAGACCCGCACCTGGGGCGAGAACCTCACGTTCTACACCGGCGTCAGCTACCTCGCCGGCGCCACGTCCGGCGCGCTCGTGGGCCTCCGCCGCGCCGCCGCCGAGGCCGAGCGCGGGGAGTCCGCCAAGCTGCGCATCAACCGCGCCCTCAACCAGAGCGGCTCCGTCGGCCGCGCCTTCGGCAACCGGTTCGGCATCGTCGCGATGCTCTTCGCCGGGACCGAGAGCTTCGTCCGCGACCAGCGCGACGGCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGCGCCGGGGCGCTCTACCGCATCGCGTCCGGCCCAAGGTCGATGATCGTCGCCGGCATCCTCGGCGGAGTCCTGTCCGGCGCAGCTGTCGCGGGTAAGCCGATGCTTCAGAGATTCGCGCCGAAGCTATCCGCCAGATTGGATTATTTACGCTGAGTAAAATTTCAGGCTGAATTACTACTCAACATGGTGTGCGCCTGGAGAAGTTTTTATTCGTAGTATCTAGCTAGCAACTCTGATCTCAATTAATAGTTTGTAACTGTTCATATTTGGTGTCCTGCAAATTAATGGACAAAAAAATGCTAATCTTTTCGTTG ]
consensusID : consensus_4963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[GGGCGAGCGGGCGAGCGCGACCTCGCTGTCGCCAGCCACCCAGCCTCCACGGTGCCGTGCACCTCCTCAGCGCGACACCGGCGGAGGATGCGGAGGAGCGGCCCACCCGCCAGCCCGCCGCAGGCCGAGCGCAGGGAGTCCGCCAAGCTGCGCATCAACCAGCGCCCTCAACCAGACGGCTCTGTCGGCCGCGCCTTCGGCAGCCGGTTCGGCATCGTTGTGATGCTCTTCACCAGGACCGAGAGCTTCATTCGCGACCAGTGCGACGTCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGCAGCCGGGGCAGCTCTACCGCATCGCGTCCGGCCCAAGGTCGATGATCATCGCCGACATCCTCGGCGGAGTCCTGTCCGGCGCCAGCCGTCGCGGGGAAGCCGATGCTTCAGAGATTCGCACCGAAGCTATCCGCCAGATTGGACTATTTACTTTGAGTAAAATTTCAGGTTAATTACTACTCCAAAAAAAAAA]
[+] EMBL BI801501 [GGGCGAGCGGGCGAGCGCGACCTCGCTGTCGCCAGCCACCCAGCCTCCACGGTGCCGTGCACCTCCTCAGCGCGACACCGGCGGAGGATGCGGAGGAGCGGCCCACCCGCCAGCCCGCCGCAGGCCGAGCGCAGGGAGTCCGCCAAGCTGCGCATCAACCAGCGCCCTCAACCAGACGGCTCTGTCGGCCGCGCCTTCGGCAGCCGGTTCGGCATCGTTGTGATGCTCTTCACCAGGACCGAGAGCTTCATTCGCGACCAGTGCGACGTCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGCAGCCGGGGCAGCTCTACCGCATCGCGTCCGGCCCAAGGTCGATGATCATCGCCGACATCCTCGGCGGAGTCCTGTCCGGCGCCAGCCGTCGCGGGGAAGCCGATGCTTCAGAGATTCGCACCGAAGCTATCCGCCAGATTGGACTATTTACTTTGAGTAAAATTTCAGGTTAATTACTACTCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4963#0 CGTCCAGAAACCCAGAAGGCACGCAGCGGCAGCAGCAGCCCACGGCAACCCTAGATCAGC 60
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 CAGCCATGTCCCGCGCCGTTGACGCCCAGCAGGAGCCCACGGAAGGGCGCCGCTTCTACT 120
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 CGCCGGATCGCCCCGAGGGCCTCGCCTTCCCCACCTCGTACCGCGCGCTCTACGACCTGC 180
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 CCACCTCGCCGGAGTGCCTCTTCGAGGAGGACAAGTTCCGGCAGACCCGCACCTGGGG-C 239
consensus_4963#1 ----------------------------GGGCGAG--CGGGCGAGCGCGACCTCGCTGTC 30
** * ** * *** * ** * * * *
consensus_4963#0 GAGAACCTCACGTTCTACACCGGCGTCAGCTACCTCGCCGGCGCCACGTCCGGCGCGCTC 299
consensus_4963#1 GCCAGCCACCCAGCCTCCAC-GGTGCCGTGCACCTCCTCAGCGCGACACCGGCGGAGGAT 89
* * ** * * ** *** ** * * ***** * **** ** * * * *
consensus_4963#0 GTGG----GCCTCCGCCGCGCCG--CCGCCG-AGGCCGAGCGCGGGGAGTCCGCCAAGCT 352
consensus_4963#1 GCGGAGGAGCGGCCCACCCGCCAGCCCGCCGCAGGCCGAGCGCAGGGAGTCCGCCAAGCT 149
* ** ** ** * **** ****** *********** ****************
consensus_4963#0 GCGCATCAACC-GCGCCCTCAACCAGAGCGGCTCCGTCGGCCGCGCCTTCGGCAACCGGT 411
consensus_4963#1 GCGCATCAACCAGCGCCCTCAACCAGA-CGGCTCTGTCGGCCGCGCCTTCGGCAGCCGGT 208
*********** *************** ****** ******************* *****
consensus_4963#0 TCGGCATCGTCGCGATGCTCTTCGCCGGGACCGAGAGCTTCGTCCGCGACCAGCGCGACG 471
consensus_4963#1 TCGGCATCGTTGTGATGCTCTTCACCAGGACCGAGAGCTTCATTCGCGACCAGTGCGACG 268
********** * ********** ** ************** * ********* ******
consensus_4963#0 GCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGC-GCCGGGGC-GCTCTACCG 529
consensus_4963#1 TCGCCGACGACTGGGTCAACACCGTCGCCGCGGGGGCCAGCAGCCGGGGCAGCTCTACCG 328
**************************************** ******** *********
consensus_4963#0 CATCGCGTCCGGCCCAAGGTCGATGATCGTCGCCGGCATCCTCGGCGGAGTCCTGTCCGG 589
consensus_4963#1 CATCGCGTCCGGCCCAAGGTCGATGATCATCGCCGACATCCTCGGCGGAGTCCTGTCCGG 388
**************************** ****** ************************
consensus_4963#0 CGC-AGCTGTCGCGGGTAAGCCGATGCTTCAGAGATTCGCGCCGAAGCTATCCGCCAGAT 648
consensus_4963#1 CGCCAGCCGTCGCGGGGAAGCCGATGCTTCAGAGATTCGCACCGAAGCTATCCGCCAGAT 448
*** *** ******** *********************** *******************
consensus_4963#0 TGGATTATTTACGCTGAGTAAAATTTCAGGCTGAATTACTACTCAACATGGTGTGCGCCT 708
consensus_4963#1 TGGACTATTTACTTTGAGTAAAATTTCAGGTT-AATTACTACTCCAAAAAAAAAA----- 502
**** ******* **************** * *********** * *
consensus_4963#0 GGAGAAGTTTTTATTCGTAGTATCTAGCTAGCAACTCTGATCTCAATTAATAGTTTGTAA 768
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 CTGTTCATATTTGGTGTCCTGCAAATTAATGGACAAAAAAATGCTAATCTTTTCGTTGAG 828
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 AATCATATTTATACTAATACTATATACACTTTAAAAAATAAAACATAGTGGTGACGGTAA 888
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 CTCCATCCCTAACCGACCAATCGTTAGATCTTGATATGGGTCGGTTCATATACATCACGC 948
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 ACTTCAATCTTGGCAGACACGCCGATTCTTCAACTAATCGTTAGATCTCGGTATCGGATG 1008
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 CATATCCTTCCCACGAAGCTGAGTGCAATTTATTTGCCAGGTTGAACTACTACTCAATGT 1068
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 GGAGTTCCTGCCTCTCCCACGAAGCTGAGTGCAATTTGTTTATCAGGTTGAATTACTACT 1128
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 CAATGTGATCTCAGGAAAAGTTTTTATTCCTAGTATCTATAGGAAAGTGATCTTAATCTC 1188
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 GAGCTTAATCGTCCATGGCCAATGCCGGATTCATAGTTCATATATTTTTCATATTTGTGT 1248
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 TGTTATTCGTGAAGTTTGATTTCACTATATGTTTGCACCTTGTGAAACCTGTTAACGCTA 1308
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 AATTTTAGCGATATGTTAAACAAGCCCTCTCGGCAAGATCATTTGGAAATCCCGCGCGCC 1368
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 GGCGAGATACAAGTTATTCATGTTTCTTGCCGTCCGCAATGCTTGTTTAACAACTGACAA 1428
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 CCTGTAGCGGCGAGGTTGGAAGCTCGCGCCAATTTGTCACCTATGCTCCAATGATGGCCA 1488
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 GTCATACTAACACATCTTCCAGGGTTGCCCCTTCTCAACCCTTCTCGCAACAGGTTTGGG 1548
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 TACAGATTCGGACTCGTTTGAGTCTCTCCTGTTCTCCATCGTCTTCGGACTTTCCCAGTT 1608
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 GGTGGCTTACTGCCTAGCACTCCGTTTCCAAGGTCGACCGTGGGACGTTCGACGCCGGAG 1668
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 TCATCCTCGTAACTTGGTAGATCTAGAAAGAGCGCAACATGTGGGTATTCGATGGAACAA 1728
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 CCTCGTCGGTCCCTTAGTTGTGTGCAATCATGTGTGATGAGTGGGAAACTTGAAAATCAA 1788
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 AGGCTCTTTAGTTTGTTGAGTATTGCCACAACACCAGTTTCAGAGAGATTTCAACCTATT 1848
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 GTAATTTCTTAATGTTGTAAAGGCGATGTACCGACGCACTGTATTTGCGCTCCCTCTAGA 1908
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 GAGGGTATGTTCGTAAAGTTTTCTCCCTTCTCCTTAATATACATCAGTCGGCATCTTCAT 1968
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 CGACCCAACGATAAACAACATCAATCTCTTTATATATTTGTAAGGTTTCAAAAACATGAG 2028
consensus_4963#1 ------------------------------------------------------------
consensus_4963#0 TCGGATCGTGTGGTTGTTGTGTA 2051
consensus_4963#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||