These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [GAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGCGGCGGCCAANAAANGANAANGANGAAGAAGAAGAAGCGTCTAAACTCCANCTGAAACCGGCGGGGANCAAAGTGTTCTCCAACTGCTGTCCACGGGANANCGCCCCCCCCGGGGCCCGTCCTTCAAGGTGTTCTACCGGGTCTCCTCCCNCNGGGCTCCGTGCCCTTCCTGTTGGGAATCCACCCGGGCACCCCCAAAAACCCATGTCCNAACCNTGTTGCCGCCGCTCANCCGCCGCCGTCCTACTACACCCCCGGCAAGGTTCCCCCCGCGGCGGCGGCGCGGAGAAGAAGAATTTTGGAACNCGGCTCCCNGTTNTTCTNCTGCCCAAAATCTGCTCCGAAAAGCGGCCGGCCGGTNTCNGGCTCCCAANTCTCCTGCNCCCCCCCACCTCNTCTCNCNTCNTCGGCNCNTTCTANTCTCTATCNCTGTCNTTCANGAACCCCCNNTTCCCCNACTTGTTCNTCAANTAAA] [+] EMBL BE229734 [GAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGCGGCGGCCAANAAANGANAANGANGAAGAAGAAGAAGCGTCTAAACTCCANCTGAAACCGGCGGGGANCAAAGTGTTCTCCAACTGCTGTCCACGGGANANCGCCCCCCCCGGGGCCCGTCCTTCAAGGTGTTCTACCGGGTCTCCTCCCNCNGGGCTCCGTGCCCTTCCTGTTGGGAATCCACCCGGGCACCCCCAAAAACCCATGTCCNAACCNTGTTGCCGCCGCTCANCCGCCGCCGTCCTACTACACCCCCGGCAAGGTTCCCCCCGCGGCGGCGGCGCGGAGAAGAAGAATTTTGGAACNCGGCTCCCNGTTNTTCTNCTGCCCAAAATCTGCTCCGAAAAGCGGCCGGCCGGTNTCNGGCTCCCAANTCTCCTGCNCCCCCCCACCTCNTCTCNCNTCNTCGGCNCNTTCTANTCTCTATCNCTGTCNTTCANGAACCCCCNNTTCCCCNACTTGTTCNTCAANTAAA] consensusID : consensus_4966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [CCGAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGGCGGCGGGCCAANAAAGGAAAAGGANGAAGAAGAAGAANGCNTCTAANCTCCACCTGAAAACCGGCGGGGAACAAGGTGTTCTCCAACTGCTNTCCAGGGAAAANCGCCNCCCCGGCNCCNNCTTTCAGGGTTTACTACGGNTTCCCCNCCCCGGGCNCCGTGCCCTNCCTTTGGNATTCCCAACCGGGNACCCCCAAAAACCCCATTTCCAANNCCTTGTTGCCGCCGTTCACCCGCCGCCNTCNTATTNAACCCCCGGGAAGGTTTCCC] [+] EMBL BE229719 [CCGAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGGCGGCGGGCCAANAAAGGAAAAGGANGAAGAAGAAGAANGCNTCTAANCTCCACCTGAAAACCGGCGGGGAACAAGGTGTTCTCCAACTGCTNTCCAGGGAAAANCGCCNCCCCGGCNCCNNCTTTCAGGGTTTACTACGGNTTCCCCNCCCCGGGCNCCGTGCCCTNCCTTTGGNATTCCCAACCGGGNACCCCCAAAAACCCCATTTCCAANNCCTTGTTGCCGCCGTTCACCCGCCGCCNTCNTATTNAACCCCCGGGAAGGTTTCCC] consensusID : consensus_4966#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [TCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGCGGCGGCAAGNAAGGAGAAGGAGGAGGAGGAGGAGGCGTCTAAGCTCCAGCTGAAGCCGGCGGGGAGAAGGTGTTCTCCAAGCTGCTGTCCAGGGAGAGCGCCGNCGGCTGTNCGTTTCAGGGTGTACTACGGCGTCGCTCCGCGGGCTC] [+] EMBL C27031 [TCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGCGGCGGCAAGNAAGGAGAAGGAGGAGGAGGAGGAGGCGTCTAAGCTCCAGCTGAAGCCGGCGGGGAGAAGGTGTTCTCCAAGCTGCTGTCCAGGGAGAGCGCCGNCGGCTGTNCGTTTCAGGGTGTACTACGGCGTCGCTCCGCGGGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4966#1 CCGAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGGG 60 consensus_4966#2 --------TCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGG- 51 consensus_4966#0 --GAGTCCTCTCCTCGAGCTCGAGATCTCTTCCTCCTCCTCGATCGCGTCCATCCATGG- 57 *************************************************** consensus_4966#1 CGGCGGGCCAANAAAGGAAAAGGANGAAGAAGAAGAANGCNTCTAANCTCCACCTGAAAA 120 consensus_4966#2 CGGCGG--CAAGNAAGGAGAAGGAGGAGGAGGAGGA-GGCGTCTAAGCTCCAGCTGAAG- 107 consensus_4966#0 CGGCGG-CCAANAAANGANAANGANGAAGAAGAAGA-AGCGTCTAAACTCCANCTGAAA- 114 ****** *** ** ** ** ** ** ** ** ** ** ***** ***** ***** consensus_4966#1 CCGGCGGGGAACAAGGTGTTCTCCAA-CTGCTNTCCAGGGAAAANCGCCNCCCC--GGCN 177 consensus_4966#2 CCGGCGGGGAG-AAGGTGTTCTCCAAGCTGCTGTCCAGGGAGA-GCGCCGNC----GGCT 161 consensus_4966#0 CCGGCGGGGANCAAAGTGTTCTCCAA-CTGCTGTCCACGGGANANCGCCCCCCCCGGGGC 173 ********** ** *********** ***** **** ** **** * ** consensus_4966#1 CCNNCTTTCAGGGTTTACTAC--GGNTTCCCCNCCCCGGGCNCCGTGCCCTNCCTTTGGN 235 consensus_4966#2 GTNCGTTTCAGGGTGTACTAC--GGCGTCGC-TCCGCGGGCTC----------------- 201 consensus_4966#0 CCGTCCTTCAAGGTGTTCTACCGGGTCTCCTCCCNCNGGGCTCCGTGCCCTTCCTGTTGG 233 **** *** * **** ** ** * **** * consensus_4966#1 ATTCCCAACCGGGNACCCCCAAAAACCCCATTTCCAANNCCTTGTTGCCGCCGTTCACCC 295 consensus_4966#2 ------------------------------------------------------------ consensus_4966#0 GAATCCACCCGGGCACCCCCAAAAACCCA--TGTCCNAACCNTGTTGCCGCCGCTCANCC 291 consensus_4966#1 GCCGCCNTCNTATTNAACCCCCGGGAAGGTTTCCC------------------------- 330 consensus_4966#2 ------------------------------------------------------------ consensus_4966#0 GCCGCCGTCCTACTACACCCCCGGCAAGGTTCCCCCCGCGGCGGCGGCGCGGAGAAGAAG 351 consensus_4966#1 ------------------------------------------------------------ consensus_4966#2 ------------------------------------------------------------ consensus_4966#0 AATTTTGGAACNCGGCTCCCNGTTNTTCTNCTGCCCAAAATCTGCTCCGAAAAGCGGCCG 411 consensus_4966#1 ------------------------------------------------------------ consensus_4966#2 ------------------------------------------------------------ consensus_4966#0 GCCGGTNTCNGGCTCCCAANTCTCCTGCNCCCCCCCACCTCNTCTCNCNTCNTCGGCNCN 471 consensus_4966#1 ------------------------------------------------------------ consensus_4966#2 ------------------------------------------------------------ consensus_4966#0 TTCTANTCTCTATCNCTGTCNTTCANGAACCCCCNNTTCCCCNACTTGTTCNTCAANTAA 531 consensus_4966#1 - consensus_4966#2 - consensus_4966#0 A 532 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||