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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1660 fasta sequence
[GAAGCACCCAATACATGCTGTTTAGCTCCACACAAATAGTTAGAAAATGAATCATTGTCTTGTAGTATCCCACAAAAAACTCCAAACTTTCCGCACATTTGCAGCTAGCAAGTTCTCTTCTTTTACCAAATCTGCACAGAAGTCTATAAAATACTCCTTCCAGTTCATCTACCAAAACAATCCACTCTTTGTCCATGTAGCTTACTTTGCCCTGATCTCCTTTGCTGGATATGGATCTCTAAAGGTCCTCAAGCCACGAGACAAGTCAAATACTCTGAAAGACTTGGACGTGCTATTTACTTCCGTATCTGCATCAACTGTTTCAAGCATGGCTACTGTTGAAATGGAGGATTTCTCAAGCGCTCAACTCTGGGTTTTGACTATTTTAATGCTGATTGGTGGTGAGGTATTCACTTCAATGCTTGGCATTCACTTTATGAGAGCCGAATTTGGTACAAAAGAGTCAGTCAGCACAAGGGATCACTCACCTTGCATTGATATTGAGTCTATTACTTCCACAAAATTTGGTCCCAGCACCCAGGGCACAAAAGTTACAGTTTCATTTTCTGAACTCCGCATGGAAAATGGAGGACATGTAGAGCCCAAGACGATTAAATTTTTAGGTTTTGTAGTGATGGGATATCTTCTAATAACAAACTTAGGCGGCTCCCTACTTATTTACCTCTACCTTAACCTGGTACCAAGTGCACATAAAATTCTAAAGAGAAAAGGCATTGGGATCATCGTATTCTCAGTATTTACAGCCATCTCCTCAGTTGGAAATTGTGGCTTCACTCCAGTAAATGAGAATATGATTATCTTTCAGAAGAACTCCATTCTTCTATTGCTAATTCTTCCTCAGATACTAGCAGGAAATACATTATTTGCACCATGCTTGAGATTAATGGTGTGGTCACTTGAGAAGATTACCGGAAAAAAGGATTGTCGTTACATTCTTGAATATCCAAAGGCCATTGGATATAAACATCTTATGAGTACCAGGGAAAGTGTTTATTTGACTTTAACAGTTGTGAGCTTGATCATTCTGCAAACCGTATTGTTCCTCTCTTTGGAGTGGAGCTCGGTAGCTTTGGATGGAATGAGCAACTATCAAAAGATAGTATCCGCTCTATTTCAGTCGGTCAATGCTAGGCATGCAGGTGAATCTGTTACAGATCTGTCAAACCTCTCTTCAGCAATCCTAGTCCTATACACCATCATGATGTATCTCCCTGGTTACACTTCGTTTTTACCCAGACATGATGGTGAGGATTCTAAGACCGAGAAGATAAACAAAAGAAAAGGGCTATTGGAGAACTGGATCTTCTCACATATGTCTTATTTGGCTATCTTTGTAATGCTAATTTGCATCACAGAACGGGACTCGATGGCTACAGATCCACTTAATTTCAATGTTTTCAGCATATTGTTTGAAGTCGTCAGTGCATATGGAAATGTGGGGTTCTCGGTTGGCTACAGCTGCAAGAGGCTACTGAACCATGATGCACGCTGCAAGGATGCCTCGTACGGGTTTGCGGGGAAATGGAGCGACAATGGGAAAGCGATCCTGATCATCGTCATGCTTTTCGGGAGGCTTAAAACGTTTAACATGAAGGGTGGAAGAGCCTGGAAGCTTAGATAACATCTAACCAATTTCAGA]
[+] EMBL OSA491818 [GAAGCACCCAATACATGCTGTTTAGCTCCACACAAATAGTTAGAAAATGAATCATTGTCTTGTAGTATCCCACAAAAAACTCCAAACTTTCCGCACATTTGCAGCTAGCAAGTTCTCTTCTTTTACCAAATCTGCACAGAAGTCTATAAAATACTCCTTCCAGTTCATCTACCAAAACAATCCACTCTTTGTCCATGTAGCTTACTTTGCCCTGATCTCCTTTGCTGGATATGGATCTCTAAAGGTCCTCAAGCCACGAGACAAGTCAAATACTCTGAAAGACTTGGACGTGCTATTTACTTCCGTATCTGCATCAACTGTTTCAAGCATGGCTACTGTTGAAATGGAGGATTTCTCAAGCGCTCAACTCTGGGTTTTGACTATTTTAATGCTGATTGGTGGTGAGGTATTCACTTCAATGCTTGGCATTCACTTTATGAGAGCCGAATTTGGTACAAAAGAGTCAGTCAGCACAAGGGATCACTCACCTTGCATTGATATTGAGTCTATTACTTCCACAAAATTTGGTCCCAGCACCCAGGGCACAAAAGTTACAGTTTCATTTTCTGAACTCCGCATGGAAAATGGAGGACATGTAGAGCCCAAGACGATTAAATTTTTAGGTTTTGTAGTGATGGGATATCTTCTAATAACAAACTTAGGCGGCTCCCTACTTATTTACCTCTACCTTAACCTGGTACCAAGTGCACATAAAATTCTAAAGAGAAAAGGCATTGGGATCATCGTATTCTCAGTATTTACAGCCATCTCCTCAGTTGGAAATTGTGGCTTCACTCCAGTAAATGAGAATATGATTATCTTTCAGAAGAACTCCATTCTTCTATTGCTAATTCTTCCTCAGATACTAGCAGGAAATACATTATTTGCACCATGCTTGAGATTAATGGTGTGGTCACTTGAGAAGATTACCGGAAAAAAGGATTGTCGTTACATTCTTGAATATCCAAAGGCCATTGGATATAAACATCTTATGAGTACCAGGGAAAGTGTTTATTTGACTTTAACAGTTGTGAGCTTGATCATTCTGCAAACCGTATTGTTCCTCTCTTTGGAGTGGAGCTCGGTAGCTTTGGATGGAATGAGCAACTATCAAAAGATAGTATCCGCTCTATTTCAGTCGGTCAATGCTAGGCATGCAGGTGAATCTGTTACAGATCTGTCAAACCTCTCTTCAGCAATCCTAGTCCTATACACCATCATGATGTATCTCCCTGGTTACACTTCGTTTTTACCCAGACATGATGGTGAGGATTCTAAGACCGAGAAGATAAACAAAAGAAAAGGGCTATTGGAGAACTGGATCTTCTCACATATGTCTTATTTGGCTATCTTTGTAATGCTAATTTGCATCACAGAACGGGACTCGATGGCTACAGATCCACTTAATTTCAATGTTTTCAGCATATTGTTTGAAGTCGTCAGTGCATATGGAAATGTGGGGTTCTCGGTTGGCTACAGCTGCAAGAGGCTACTGAACCATGATGCACGCTGCAAGGATGCCTCGTACGGGTTTGCGGGGAAATGGAGCGACAATGGGAAAGCGATCCTGATCATCGTCATGCTTTTCGGGAGGCTTAAAACGTTTAACATGAAGGGTGGAAGAGCCTGGAAGCTTAGATAACATCTAACCAATTTCAGA]
consensusID : consensus_497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1362 fasta sequence
[ATATTTTTTTCCCTATATAAATGGACAAACATCAGTACATTGATGCAAATAAGGAAGCACCCAATACATGCTGTTTAGCTCCACACAAATAGTTAGAAAATGAATCATTGTCTTGTAGTATCCCACAAAAAACTCCAAACTTTCCGCACATTTGCAGCTAGCAAGTTCTCTTCTTTTACCAAATCTGCACAGAAGTCTATAAAATACTCCTTCCAGTTCATCTACCAAAACAATCCACTCTTTGTCCATGTAGCTTACTTTGCCCTGATCTCCTTTGCTGGATATGGATCTCTAAAGGTCCTCAAGCCACGAGACAAGTCAAATACTCTGAAAGACTTGGACGTGCTATTTACTTCCGTATCTGCATCAACTGTTTCAAGCATGGCTACTGTTGAAATGGAGGATTTCTCAAGCGCTCAACTCTGGGTTTTGACTATTTTAATGCTGATTGGTGGTGAGGTATTCACTTCAATGCTTGGCATTCACTTTATGAGAGCCGAATTTGGTACAAAAGAGTCAGTCAGCACAAGGGATCACTCACCTTGCATTGATATTGAGTCTATTACTTCCACAAAATTTGGTCCCAGCACCCAGGGCACAAAAGTTACAGTTTCATTTTCTGAACTCCGCATGGAAAATGGAGGACATGTAGAGCCCAAGACGATTAAATTTTTAGGTTTTGTAGTGATGGGATATCTTCTAATAACAAACTTAGGCGGCTCCCTACTTATTTACCTCTACCTTAACCTGGTACCAAGTGCACATAAAATTCTAAAGAGAAAAGGCATTGGGATCATCGTATTCTCAGTATTTACAGCCATCTCCTCAGTTGGAAATTGTGGCTTCACTCCAGTAAATGAGAATATGATTATCTTTCAGAAGAACTCCATTCTTCTATTGCTAATTCTTCCTCAGATACTAGCAGGAAATACATTATTTGCACCATGCTTGAGATTAATGGTGTGGTCACTTGAGAAGATTACCGGAAAAAAGGATTGTCGTTACATTCTTGAATATCCAAAGGCCATTGGATATAAACATCTTATGAGTACCAGGGAAAGTGTTTATTTGACTTTAACAGTTGTGAGCTTGATCATTCTGCAAACCGTATTGTTCCTCTCTTTGGAGTGGAGCTCGGTAGCTTTGGATGGAATGAGCAACTATCAAAAGATAGTATCCGCTCTATTTCAGTCGGTCAATGCTAGGCATGCAGGTGAATCTGTTACAGATCTGTCAAACCTCTCTTCAGCAATCCTAGTCATACATCTCGTCGGGCGGCGAAGGGAAGCTCTCGCATGGCGGCGGCGGCGCGAGCCGGCGACCTCGATAGCGAGCGGGCGGTCGCCGACGACGGCGATGATG]
[-] EMBL AK121973 [ATATTTTTTTCCCTATATAAATGGACAAACATCAGTACATTGATGCAAATAAGGAAGCACCCAATACATGCTGTTTAGCTCCACACAAATAGTTAGAAAATGAATCATTGTCTTGTAGTATCCCACAAAAAACTCCAAACTTTCCGCACATTTGCAGCTAGCAAGTTCTCTTCTTTTACCAAATCTGCACAGAAGTCTATAAAATACTCCTTCCAGTTCATCTACCAAAACAATCCACTCTTTGTCCATGTAGCTTACTTTGCCCTGATCTCCTTTGCTGGATATGGATCTCTAAAGGTCCTCAAGCCACGAGACAAGTCAAATACTCTGAAAGACTTGGACGTGCTATTTACTTCCGTATCTGCATCAACTGTTTCAAGCATGGCTACTGTTGAAATGGAGGATTTCTCAAGCGCTCAACTCTGGGTTTTGACTATTTTAATGCTGATTGGTGGTGAGGTATTCACTTCAATGCTTGGCATTCACTTTATGAGAGCCGAATTTGGTACAAAAGAGTCAGTCAGCACAAGGGATCACTCACCTTGCATTGATATTGAGTCTATTACTTCCACAAAATTTGGTCCCAGCACCCAGGGCACAAAAGTTACAGTTTCATTTTCTGAACTCCGCATGGAAAATGGAGGACATGTAGAGCCCAAGACGATTAAATTTTTAGGTTTTGTAGTGATGGGATATCTTCTAATAACAAACTTAGGCGGCTCCCTACTTATTTACCTCTACCTTAACCTGGTACCAAGTGCACATAAAATTCTAAAGAGAAAAGGCATTGGGATCATCGTATTCTCAGTATTTACAGCCATCTCCTCAGTTGGAAATTGTGGCTTCACTCCAGTAAATGAGAATATGATTATCTTTCAGAAGAACTCCATTCTTCTATTGCTAATTCTTCCTCAGATACTAGCAGGAAATACATTATTTGCACCATGCTTGAGATTAATGGTGTGGTCACTTGAGAAGATTACCGGAAAAAAGGATTGTCGTTACATTCTTGAATATCCAAAGGCCATTGGATATAAACATCTTATGAGTACCAGGGAAAGTGTTTATTTGACTTTAACAGTTGTGAGCTTGATCATTCTGCAAACCGTATTGTTCCTCTCTTTGGAGTGGAGCTCGGTAGCTTTGGATGGAATGAGCAACTATCAAAAGATAGTATCCGCTCTATTTCAGTCGGTCAATGCTAGGCATGCAGGTGAATCTGTTACAGATCTGTCAAACCTCTCTTCAGCAATCCTAGTCATACATCTCGTCGGGCGGCGAAGGGAAGCTCTCGCATGGCGGCGGCGGCGCGAGCCGGCGACCTCGATAGCGAGCGGGCGGTCGCCGACGACGGCGATGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_497#0 -----------------------------------------------------GAAGCAC 7
consensus_497#1 ATATTTTTTTCCCTATATAAATGGACAAACATCAGTACATTGATGCAAATAAGGAAGCAC 60
*******
consensus_497#0 CCAATACATGCTGTTTAGCTCCACACAAATAGTTAGAAAATGAATCATTGTCTTGTAGTA 67
consensus_497#1 CCAATACATGCTGTTTAGCTCCACACAAATAGTTAGAAAATGAATCATTGTCTTGTAGTA 120
************************************************************
consensus_497#0 TCCCACAAAAAACTCCAAACTTTCCGCACATTTGCAGCTAGCAAGTTCTCTTCTTTTACC 127
consensus_497#1 TCCCACAAAAAACTCCAAACTTTCCGCACATTTGCAGCTAGCAAGTTCTCTTCTTTTACC 180
************************************************************
consensus_497#0 AAATCTGCACAGAAGTCTATAAAATACTCCTTCCAGTTCATCTACCAAAACAATCCACTC 187
consensus_497#1 AAATCTGCACAGAAGTCTATAAAATACTCCTTCCAGTTCATCTACCAAAACAATCCACTC 240
************************************************************
consensus_497#0 TTTGTCCATGTAGCTTACTTTGCCCTGATCTCCTTTGCTGGATATGGATCTCTAAAGGTC 247
consensus_497#1 TTTGTCCATGTAGCTTACTTTGCCCTGATCTCCTTTGCTGGATATGGATCTCTAAAGGTC 300
************************************************************
consensus_497#0 CTCAAGCCACGAGACAAGTCAAATACTCTGAAAGACTTGGACGTGCTATTTACTTCCGTA 307
consensus_497#1 CTCAAGCCACGAGACAAGTCAAATACTCTGAAAGACTTGGACGTGCTATTTACTTCCGTA 360
************************************************************
consensus_497#0 TCTGCATCAACTGTTTCAAGCATGGCTACTGTTGAAATGGAGGATTTCTCAAGCGCTCAA 367
consensus_497#1 TCTGCATCAACTGTTTCAAGCATGGCTACTGTTGAAATGGAGGATTTCTCAAGCGCTCAA 420
************************************************************
consensus_497#0 CTCTGGGTTTTGACTATTTTAATGCTGATTGGTGGTGAGGTATTCACTTCAATGCTTGGC 427
consensus_497#1 CTCTGGGTTTTGACTATTTTAATGCTGATTGGTGGTGAGGTATTCACTTCAATGCTTGGC 480
************************************************************
consensus_497#0 ATTCACTTTATGAGAGCCGAATTTGGTACAAAAGAGTCAGTCAGCACAAGGGATCACTCA 487
consensus_497#1 ATTCACTTTATGAGAGCCGAATTTGGTACAAAAGAGTCAGTCAGCACAAGGGATCACTCA 540
************************************************************
consensus_497#0 CCTTGCATTGATATTGAGTCTATTACTTCCACAAAATTTGGTCCCAGCACCCAGGGCACA 547
consensus_497#1 CCTTGCATTGATATTGAGTCTATTACTTCCACAAAATTTGGTCCCAGCACCCAGGGCACA 600
************************************************************
consensus_497#0 AAAGTTACAGTTTCATTTTCTGAACTCCGCATGGAAAATGGAGGACATGTAGAGCCCAAG 607
consensus_497#1 AAAGTTACAGTTTCATTTTCTGAACTCCGCATGGAAAATGGAGGACATGTAGAGCCCAAG 660
************************************************************
consensus_497#0 ACGATTAAATTTTTAGGTTTTGTAGTGATGGGATATCTTCTAATAACAAACTTAGGCGGC 667
consensus_497#1 ACGATTAAATTTTTAGGTTTTGTAGTGATGGGATATCTTCTAATAACAAACTTAGGCGGC 720
************************************************************
consensus_497#0 TCCCTACTTATTTACCTCTACCTTAACCTGGTACCAAGTGCACATAAAATTCTAAAGAGA 727
consensus_497#1 TCCCTACTTATTTACCTCTACCTTAACCTGGTACCAAGTGCACATAAAATTCTAAAGAGA 780
************************************************************
consensus_497#0 AAAGGCATTGGGATCATCGTATTCTCAGTATTTACAGCCATCTCCTCAGTTGGAAATTGT 787
consensus_497#1 AAAGGCATTGGGATCATCGTATTCTCAGTATTTACAGCCATCTCCTCAGTTGGAAATTGT 840
************************************************************
consensus_497#0 GGCTTCACTCCAGTAAATGAGAATATGATTATCTTTCAGAAGAACTCCATTCTTCTATTG 847
consensus_497#1 GGCTTCACTCCAGTAAATGAGAATATGATTATCTTTCAGAAGAACTCCATTCTTCTATTG 900
************************************************************
consensus_497#0 CTAATTCTTCCTCAGATACTAGCAGGAAATACATTATTTGCACCATGCTTGAGATTAATG 907
consensus_497#1 CTAATTCTTCCTCAGATACTAGCAGGAAATACATTATTTGCACCATGCTTGAGATTAATG 960
************************************************************
consensus_497#0 GTGTGGTCACTTGAGAAGATTACCGGAAAAAAGGATTGTCGTTACATTCTTGAATATCCA 967
consensus_497#1 GTGTGGTCACTTGAGAAGATTACCGGAAAAAAGGATTGTCGTTACATTCTTGAATATCCA 1020
************************************************************
consensus_497#0 AAGGCCATTGGATATAAACATCTTATGAGTACCAGGGAAAGTGTTTATTTGACTTTAACA 1027
consensus_497#1 AAGGCCATTGGATATAAACATCTTATGAGTACCAGGGAAAGTGTTTATTTGACTTTAACA 1080
************************************************************
consensus_497#0 GTTGTGAGCTTGATCATTCTGCAAACCGTATTGTTCCTCTCTTTGGAGTGGAGCTCGGTA 1087
consensus_497#1 GTTGTGAGCTTGATCATTCTGCAAACCGTATTGTTCCTCTCTTTGGAGTGGAGCTCGGTA 1140
************************************************************
consensus_497#0 GCTTTGGATGGAATGAGCAACTATCAAAAGATAGTATCCGCTCTATTTCAGTCGGTCAAT 1147
consensus_497#1 GCTTTGGATGGAATGAGCAACTATCAAAAGATAGTATCCGCTCTATTTCAGTCGGTCAAT 1200
************************************************************
consensus_497#0 GCTAGGCATGCAGGTGAATCTGTTACAGATCTGTCAAACCTCTCTTCAGCAATCCTAGTC 1207
consensus_497#1 GCTAGGCATGCAGGTGAATCTGTTACAGATCTGTCAAACCTCTCTTCAGCAATCCTAGTC 1260
************************************************************
consensus_497#0 CTATACACCATCATGATGTATCTCCCTGGTTACACTTCGTTTTTACCCAGACATGATGGT 1267
consensus_497#1 ATACATCTCGTCGGGCGGCGAAGGGAAGCTCTCGCATGGCGGCGGC---GGCGCGA-GCC 1316
** * * ** * * * * * * * * * * * ** *
consensus_497#0 GAGGATTCTAAGACCGAGAAGATAAACAAAAGAAAAGGGCTATTGGAGAACTGGATCTTC 1327
consensus_497#1 GGCGACCTCGATAGCGAGCGGGCGGTCGCC-GACGACGGCGATGATG------------- 1362
* ** * * **** * * ** * *** **
consensus_497#0 TCACATATGTCTTATTTGGCTATCTTTGTAATGCTAATTTGCATCACAGAACGGGACTCG 1387
consensus_497#1 ------------------------------------------------------------
consensus_497#0 ATGGCTACAGATCCACTTAATTTCAATGTTTTCAGCATATTGTTTGAAGTCGTCAGTGCA 1447
consensus_497#1 ------------------------------------------------------------
consensus_497#0 TATGGAAATGTGGGGTTCTCGGTTGGCTACAGCTGCAAGAGGCTACTGAACCATGATGCA 1507
consensus_497#1 ------------------------------------------------------------
consensus_497#0 CGCTGCAAGGATGCCTCGTACGGGTTTGCGGGGAAATGGAGCGACAATGGGAAAGCGATC 1567
consensus_497#1 ------------------------------------------------------------
consensus_497#0 CTGATCATCGTCATGCTTTTCGGGAGGCTTAAAACGTTTAACATGAAGGGTGGAAGAGCC 1627
consensus_497#1 ------------------------------------------------------------
consensus_497#0 TGGAAGCTTAGATAACATCTAACCAATTTCAGA 1660
consensus_497#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||