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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4980#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1138 fasta sequence
[TCAATTCCCATCCTAGCAAGCATGGCCGGCTCCTCCTCTCTTGCATCGCCTCACTCACTGCTGCTACCACTCCTCCTTCTTTTCCTCCTCGTTGCCGCTGCCATAGGCAGCTA-CGACCCCAAGGCGTTCTGCTCCAAGACGACAGACATAGCATCGTGCCTTAGGGTGTTCCCGACACTCCCAGACATCGTCACCAAGGCGCAGGACAACAAAGAGTTGTACAAACGGCTGGTCCGCTACTGCTCTTTCAAGACCTACGAGGCCACGTCGCTCGCGGAATCCATGATTGCCACCACCACCGCTGCCGACCCCAAGATCAGCGCCCCCTTCTTCCCGCAGTGGAAAAGGGACGAGGCGATGACGACAAAAACACCTCCAGGCAAGTGCCTCCTGAGCTGCAACAAGACCATCGGCGAAG-TTGACGCCATCCTAACCTGCGGACACACCTACATGGAAGACAGGCCCCCCATCATCCACCAGAACCTCACCGTCTTGTTCCATGGCGGCCACCCGCCGTCACTCTGCAAGAGTGGATGCCTTGACGGCTCGTCGTCAGAGGGTGAGGCCCTCCTCGCCACCAAGTTCAACTATATATGGAGCTTGTTGGATCTCATGAAAGCTGTCCTACCGGAATATCTTTCTGAGACTGGGACTGCGACGACGACGGTACCATCTCCCTACGTCGCTGCTGCGGCGGCCCCGGCGCCATGAGCAACTACAAGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCTTGGAATCCCTATATACACGCATATACTATGTATCTAAGAAATAATCAAGATTTCACAGAGAGCATTTAAGAATCATGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCATCCATCAGTTAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATACACATACTTGCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCATTTATACAGCAAGCATATATCATAACCAAACTTATGTTTTTTTTTTGGCATGTAAAGATTGAATTTAGTTTTTTAGGCATAATTGTATTCTTGCCTTTAATTACTTGCTGCAATTGTGATTTTTCC]
[+] EMBL AK071532 [TCAATTCCCATCCTAGCAAGCATGGCCGGCTCCTCCTCTCTTGCATCGCCTCACTCACTGCTGCTACCACTCCTCCTTCTTTTCCTCCTCGTTGCCGCTGCCATAGGCAGCTA CGACCCCAAGGCGTTCTGCTCCAAGACGACAGACATAGCATCGTGCCTTAGGGTGTTCCCGACACTCCCAGACATCGTCACCAAGGCGCAGGACAACAAAGAGTTGTACAAACGGCTGGTCCGCTACTGCTCTTTCAAGACCTACGAGGCCACGTCGCTCGCGGAATCCATGATTGCCACCACCACCGCTGCCGACCCCAAGATCAGCGCCCCCTTCTTCCCGCAGTGGAAAAGGGACGAGGCGATGACGACAAAAACACCTCCAGGCAAGTGCCTCCTGAGCTGCAACAAGACCATCGGCGAAG TTGACGCCATCCTAACCTGCGGACACACCTACATGGAAGACAGGCCCCCCATCATCCACCAGAACCTCACCGTCTTGTTCCATGGCGGCCACCCGCCGTCACTCTGCAAGAGTGGATGCCTTGACGGCTCGTCGTCAGAGGGTGAGGCCCTCCTCGCCACCAAGTTCAACTATATATGGAGCTTGTTGGATCTCATGAAAGCTGTCCTACCGGAATATCTTTCTGAGACTGGGACTGCGACGACGACGGTACCATCTCCCTACGTCGCTGCTGCGGCGGCCCCGGCGCCATGAGCAACTACAAGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCTTGGAATCCCTATATACACGCATATACTATGTATCTAAGAAATAATCAAGATTTCACAGAGAGCATTTAAGAATCATGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCATCCATCAGTTAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATACACATACTTGCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCATTTATACAGCAAGCATATATCATAACCAAACTTATGTTTTTTTTTTGGCATGTAAAGATTGAATTTAGTTTTTTAGGCATAATTGTATTCTTGCCTTTAATTACTTGCTGCAATTGTGATTTTTCC]
[+] EMBL C73072 [ CCTCTCTTGCATCGCCTCACTCACTGCTGCTACCACTCCTCCTTCTTTTCCTCCTCGTTGCCGCTGCCATAGGCANTTANCGACCCCAAGGCGTTCTGCTCCAAGACGACAGACATAGCATCGTGCCTTAGGGTGTTCCCGACACTCCCAGACATCGTCACCAAGGCGCAGGACAACAAAGAGTTGTACAAACGGCTGGTCCGCTACTGCTCTTTCAAGACCTACGAGGCCACGTCGCTCGCGGAATCCATGATTGCCACCACCACCGCTGCCGACCCCAAGATCAGCGCCCCCTTCTTCCCGCAGTGGAAAAGGGACGAGGCGATGACGACAAAAACACCTCCAGGCAAGTGCCTCCTGAGCTGCAACAAGACCATCGGCGAAGTTTGACGNNAT CTAA CTGCGGACACA CTACATGG ]
consensusID : consensus_4980#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[GGGCGGCCACCNGCCGTCACTCTGCAAGAGTGGATGCCTTGACGGCTCGTCGTCAGAGGGTGAGGCCCTCCTCNCCACCAAGTTCAACTATNTATGGAGCTTGTTGGATCTCATGAAAGCTNTCCTACCGGAATATCTTTCTGAGACTGGGACTGCGACGACGACGGTACCATCTCCCTACGTCGCTGCTGCGGCGGCCCCGGCGCCATGAGCAACTACAAGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCTTGGAATCCCTATATACACGCATATACTATGTATCTAAGAAATAATCAAGATTTCACAGAGAGCATTTAAGAATCATGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCATCCATCAGTTAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATACACATACTTGCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCATTTATACAGCAAGCATATATCATAACCAAACTTATGTTTTTTTTTTTGGCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU085929 [GGGCGGCCACCNGCCGTCACTCTGCAAGAGTGGATGCCTTGACGGCTCGTCGTCAGAGGGTGAGGCCCTCCTCNCCACCAAGTTCAACTATNTATGGAGCTTGTTGGATCTCATGAAAGCTNTCCTACCGGAATATCTTTCTGAGACTGGGACTGCGACGACGACGGTACCATCTCCCTACGTCGCTGCTGCGGCGGCCCCGGCGCCATGAGCAACTACAAGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCTTGGAATCCCTATATACACGCATATACTATGTATCTAAGAAATAATCAAGATTTCACAGAGAGCATTTAAGAATCATGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCATCCATCAGTTAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATACACATACTTGCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCATTTATACAGCAAGCATATATCATAACCAAACTTATGTTTTTTTTTTTGGCAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4980#0 TCAATTCCCATCCTAGCAAGCATGGCCGGCTCCTCCTCTCTTGCATCGCCTCACTCACTG 60
consensus_4980#1 ------------------------------------------------------------
consensus_4980#0 CTGCTACCACTCCTCCTTCTTTTCCTCCTCGTTGCCGCTGCCATAGGCAGCTACGACCCC 120
consensus_4980#1 ------------------------------------------------------------
consensus_4980#0 AAGGCGTTCTGCTCCAAGACGACAGACATAGCATCGTGCCTTAGGGTGTTCCCGACACTC 180
consensus_4980#1 ------------------------------------------------------------
consensus_4980#0 CCAGACATCGTCACCAAGGCGCAGGACAACAAAGAGTTGTACAAACGGCTGGTCCGCTAC 240
consensus_4980#1 ------------------------------------------------------------
consensus_4980#0 TGCTCTTTCAAGACCTACGAGGCCACGTCGCTCGCGGAATCCATGATTGCCACCACCACC 300
consensus_4980#1 ------------------------------------------------------------
consensus_4980#0 GCTGCCGACCCCAAGATCAGCGCCCCCTTCTTCCCGCAGTGGAAAAGGGACGAGGCGATG 360
consensus_4980#1 ------------------------------------------------------------
consensus_4980#0 ACGACAAAAACACCTCCAGGCAAGTGCCTCCTGAGCTGCAACAAGACCATCGGCGAAGTT 420
consensus_4980#1 ------------------------------------------------------------
consensus_4980#0 GACGCCATCCTAACCTGCGGACACACCTACATGGAAGACAGGCCCCCCATCATCCACCAG 480
consensus_4980#1 ------------------------------------------------------------
consensus_4980#0 AACCTCACCGTCTTGTTCCATGGCGGCCACCCGCCGTCACTCTGCAAGAGTGGATGCCTT 540
consensus_4980#1 --------------------GGGCGGCCACCNGCCGTCACTCTGCAAGAGTGGATGCCTT 40
********** ****************************
consensus_4980#0 GACGGCTCGTCGTCAGAGGGTGAGGCCCTCCTCGCCACCAAGTTCAACTATATATGGAGC 600
consensus_4980#1 GACGGCTCGTCGTCAGAGGGTGAGGCCCTCCTCNCCACCAAGTTCAACTATNTATGGAGC 100
********************************* ***************** ********
consensus_4980#0 TTGTTGGATCTCATGAAAGCTGTCCTACCGGAATATCTTTCTGAGACTGGGACTGCGACG 660
consensus_4980#1 TTGTTGGATCTCATGAAAGCTNTCCTACCGGAATATCTTTCTGAGACTGGGACTGCGACG 160
********************* **************************************
consensus_4980#0 ACGACGGTACCATCTCCCTACGTCGCTGCTGCGGCGGCCCCGGCGCCATGAGCAACTACA 720
consensus_4980#1 ACGACGGTACCATCTCCCTACGTCGCTGCTGCGGCGGCCCCGGCGCCATGAGCAACTACA 220
************************************************************
consensus_4980#0 AGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCTTGGAATCC 780
consensus_4980#1 AGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCTTGGAATCC 280
************************************************************
consensus_4980#0 CTATATACACGCATATACTATGTATCTAAGAAATAATCAAGATTTCACAGAGAGCATTTA 840
consensus_4980#1 CTATATACACGCATATACTATGTATCTAAGAAATAATCAAGATTTCACAGAGAGCATTTA 340
************************************************************
consensus_4980#0 AGAATCATGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCATCCATCAGT 900
consensus_4980#1 AGAATCATGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCATCCATCAGT 400
************************************************************
consensus_4980#0 TAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATACACATACTT 960
consensus_4980#1 TAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATACACATACTT 460
************************************************************
consensus_4980#0 GCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCATTTATACA 1020
consensus_4980#1 GCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCATTTATACA 520
************************************************************
consensus_4980#0 GCAAGCATATATCATAACCAAACTTATGTTTTTTTTTT-GGCATGTAAAGATTGAATTTA 1079
consensus_4980#1 GCAAGCATATATCATAACCAAACTTATGTTTTTTTTTTTGGCAAAAAAAAAAAAAAAAAA 580
************************************** **** *** * ** *
consensus_4980#0 GTTTTTTAGGCATAATTGTATTCTTGCCTTTAATTACTTGCTGCAATTGTGATTTTTCC 1138
consensus_4980#1 A---------------------------------------------------------- 581
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||