These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1403 fasta sequence [CCGTATCCAATGGCAGTCTCCTCTTTGGCCTTCGCTAGAGTCCTCGTCCCGCCATCTCCAAGAACAGCATTAGCTTCGGCTTGCTCCCATTCTATCAAGATGTGCGCTTCTTCAGCCTCACCGTCGGAGTCAAAGAAGACCGTCTGGGTGTGGACAACAAATCGGCAGGTGATGACGGCAGCCGTGGAGAGGGGCTGGAGCACTTTCCTCTTTGGATCCAAAGATCTTGGCAAGGATTGGTCATCTACTGCTCGCATCAATCCTCTTTTTATCGATGGCCTGGAGATATTCGATGAGAAAAAACAAAAGATTGCTGTAATTTCTGAAGTCTCTTCCCCAGGAGAGCTGGAACTCATACAACCAGACAATGTGGAAGTGGAAAACATCGTGATAGACTTCCGAGGTGGATGGCAGGTTATACCAGCAGAAAATATAGTTGCTGCATTCCAGGGATGTAGAGGAACTGTATTGGCTGTTTCAACAAACTCAACTGAGGCTCAGGTTTTTCTTGAGGCCTTGGAGCAAGGGCTTGATGGAGTTATACTTAAAGTAGAGGACATGGATGATATTATCAAACTCAAGGATTATTTTGACAGAAGGAACGAGGCAAAGAGCCAGTTAATGTTGACAAAGGCTACTGTGTCAAAGGTTGAAGTTGTTGGTATGGGTGATCGTGTTTGTGTGGATCTTTGCAGTATGATGCGACCTGGTGAAGGCCTTCTGGTTGGCTCCTATGCAAGAGGAATGTTTCTTGTTCACTCTGAATGCCTGGAGACAAATTATATTGCAAGCAGGCCTTTCAGGGTCAATGCGGGCCCTGTTCATGCATATGTTGCAGTCCCTGGTGGCCGAACTAGTTACCTCTCAGAGCTGCAATCAGGTCGGGAAGTAATAGTTGTTGATCAAAATGGTTTGTGGCGTACTGCGATTGTTGGTCGTGTTAAGATTGAATCAAGGCCTCTAATCCTTGTAGAAGCAAAGGAGAACGGTGGAGATGATACTTACAGCATTTTCCTGCAAAATGCCGAGACAGTTGCACTTATCACTCCTGAAAAAGGATCTAGTGGAAGAACTGCTATACCTGTGACTTCACTGAAAGTTGGTGATGAGGTTTTGGTGAGGAAACAGGGCGGTGCCCGTCACACTGGAATAGAGATTCAGGAGTTTATTGTTGAGAAATGAGACTGC-GTCAGTTATTC-AGTTACCTGCTAGCAGG-CCAGTCTTTGTTCTTC-CCAAACAATTCTTTTGCTAATTC-ATGGGAGTGAAAATTCAC-ACCAACTTATGATA-GGGGACTATCTGAATCATCATTGAATTCGAGCCATGTACATCTGTATATACTATAGTACTAGTAACTTTTAAGTCAAGGAGGAAATTTCCATTTGGATGTNAAAAAAAAAAAAAAA] [+] EMBL AK067530 [CCGTATCCAATGGCAGTCTCCTCTTTGGCCTTCGCTAGAGTCCTCGTCCCGCCATCTCCAAGAACAGCATTAGCTTCGGCTTGCTCCCATTCTATCAAGATGTGCGCTTCTTCAGCCTCACCGTCGGAGTCAAAGAAGACCGTCTGGGTGTGGACAACAAATCGGCAGGTGATGACGGCAGCCGTGGAGAGGGGCTGGAGCACTTTCCTCTTTGGATCCAAAGATCTTGGCAAGGATTGGTCATCTACTGCTCGCATCAATCCTCTTTTTATCGATGGCCTGGAGATATTCGATGAGAAAAAACAAAAGATTGCTGTAATTTCTGAAGTCTCTTCCCCAGGAGAGCTGGAACTCATACAACCAGACAATGTGGAAGTGGAAAACATCGTGATAGACTTCCGAGGTGGATGGCAGGTTATACCAGCAGAAAATATAGTTGCTGCATTCCAGGGATGTAGAGGAACTGTATTGGCTGTTTCAACAAACTCAACTGAGGCTCAGGTTTTTCTTGAGGCCTTGGAGCAAGGGCTTGATGGAGTTATACTTAAAGTAGAGGACATGGATGATATTATCAAACTCAAGGATTATTTTGACAGAAGGAACGAGGCAAAGAGCCAGTTAATGTTGACAAAGGCTACTGTGTCAAAGGTTGAAGTTGTTGGTATGGGTGATCGTGTTTGTGTGGATCTTTGCAGTATGATGCGACCTGGTGAAGGCCTTCTGGTTGGCTCCTATGCAAGAGGAATGTTTCTTGTTCACTCTGAATGCCTGGAGACAAATTATATTGCAAGCAGGCCTTTCAGGGTCAATGCGGGCCCTGTTCATGCATATGTTGCAGTCCCTGGTGGCCGAACTAGTTACCTCTCAGAGCTGCAATCAGGTCGGGAAGTAATAGTTGTTGATCAAAATGGTTTGTGGCGTACTGCGATTGTTGGTCGTGTTAAGATTGAATCAAGGCCTCTAATCCTTGTAGAAGCAAAGGAGAACGGTGGAGATGATACTTACAGCATTTTCCTGCAAAATGCCGAGACAGTTGCACTTATCACTCCTGAAAAAGGATCTAGTGGAAGAACTGCTATACCTGTGACTTCACTGAAAGTTGGTGATGAGGTTTTGGTGAGGAAACAGGGCGGTGCCCGTCACACTGGAATAGAGATTCAGGAGTTTATTGTTGAGAAATGAGACTGC GTCAGTTATTC AGTTACCTGCTAGCAGG CCAGTCTTTGTTCTTC CCAAACAATTCTTTTGCTAATTC ATGGGAGTGAAAATTCAC ACCAACTTATGATA GGGGACTATCTGAATCATCATTGAATTCGAGCCATGTACATCTGTATATACTATAGTACTAGTAACTTTTAAGTCAAGGAGGAAATTTCCA ] [+] EMBL AU166453 [ GAAGCAAAGGAGAACGGTGGAGATGANACTTNCAGCATTTTCCTGCAAAANGCCGAGACAGTTGCACTTATCACTCCTNAAAAAGGATCTAGTGGAAGAACTGCTANACCTGTGACTTCACTNAAAGTTGGTGATGAGGTTTTGGTGAGGAAACAGGGCGGTGCCCGTCACACTGGAATAGAGATTCAGGAGTTTATTGTTNAGAAATGAGACTGCGGCCAGTTATTCNAGTTACCTGCTAGCAGGCCCAGTCTTTGTTCTTCNCCCAACAATTCTTTTGCTAATTCNATGGGAGTGAAAATTCCCNCCCCACTTATGATAGGGGGNCTATTTGAATCATCATTGAANTCGAGCCATGTACATCTGTATATACTATAGTACTAGTAACTTTTAAGTCAAGGAGGGAATTTCCNTTTGGATGTNAAAAAAAAAAAAAAA] consensusID : consensus_4983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [CTCATACAACCAGACAATGTGGAAGTGGAAAACATCGTGATAGACTTCCGAGGTGGATGGCAGGTTAGATATTCGAATATTGGACTATCAGCAAATTACTTCCATGACATATGAATTAATTTCAATTGTCATAGTGAGATAAGTCATCATACTTGCATTTTTGTAATGCATTCTATGCTGTTTAGTCATCTTGAGTGTCTTTTTGTTTGTGTGAATAGCTTATTTGAATTCCATCAATGGTTTGAATGAGTGTCCAGTATACGTTTTTTCTGTGTTGTTAGGATCATTGGCTTGACATGCTGTACTGTTTCATATTTGAGCCGCAACTTGCAAAGTACACTTGACAAAACCCAACAAGCGTTAACAGGTGCCTCCTTTGTCCTCCTGAATTTCGTAGGTTATACCAGCAGAAAATATAGTTGCTGCATTCCAGGGATGTAGAGGAACTGTATTGGCTGTTTCAACAAACTCAACTGAGGCTCAGGTTTTTCTTGAGGTAACTGTCAAGATGTTTCAACATACAATAGAAGTTCCTGTGTATAATGATGTATCGTGTTCCTATCAATTATCTTTTGTGAAGTTGTTCCCCCAGTTACTTAGTTACTTTACAGGCCTTGGAGCAAGGGCTTGATGGAGTTATACTTAAAGTAGAGGACATGGATG] [-] EMBL CA998193 [CTCATACAACCAGACAATGTGGAAGTGGAAAACATCGTGATAGACTTCCGAGGTGGATGGCAGGTTAGATATTCGAATATTGGACTATCAGCAAATTACTTCCATGACATATGAATTAATTTCAATTGTCATAGTGAGATAAGTCATCATACTTGCATTTTTGTAATGCATTCTATGCTGTTTAGTCATCTTGAGTGTCTTTTTGTTTGTGTGAATAGCTTATTTGAATTCCATCAATGGTTTGAATGAGTGTCCAGTATACGTTTTTTCTGTGTTGTTAGGATCATTGGCTTGACATGCTGTACTGTTTCATATTTGAGCCGCAACTTGCAAAGTACACTTGACAAAACCCAACAAGCGTTAACAGGTGCCTCCTTTGTCCTCCTGAATTTCGTAGGTTATACCAGCAGAAAATATAGTTGCTGCATTCCAGGGATGTAGAGGAACTGTATTGGCTGTTTCAACAAACTCAACTGAGGCTCAGGTTTTTCTTGAGGTAACTGTCAAGATGTTTCAACATACAATAGAAGTTCCTGTGTATAATGATGTATCGTGTTCCTATCAATTATCTTTTGTGAAGTTGTTCCCCCAGTTACTTAGTTACTTTACAGGCCTTGGAGCAAGGGCTTGATGGAGTTATACTTAAAGTAGAGGACATGGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4983#0 CCGTATCCAATGGCAGTCTCCTCTTTGGCCTTCGCTAGAGTCCTCGTCCCGCCATCTCCA 60 consensus_4983#1 ------CTCATACAACCAGACAATGTGGAAGTGGAAAACATCGTGATAG----ACTTCCG 50 * ** * * * *** * * * ** * * * *** consensus_4983#0 AGAACAGCATTAGCTTCGGCTTGCTCCCATT---CTATCAAGATGTGCGCTTCTTCAGCC 117 consensus_4983#1 AGGTGGATGGCAGGTTAGATATTCGAATATTGGACTATCAGCAAAT-TACTTCCATGACA 109 ** ** ** * * * *** ****** * * **** * consensus_4983#0 TCACCGTCGGAGTCAAAGAAGACCGTCTGGGTGTGGACAACAAATCGGCAGGTG-ATGAC 176 consensus_4983#1 TATGAATTAATTTCAATTGTCATAG--TGAGATAAGTCATCATACTTGCATTTTTGTAAT 167 * * **** * * ** * * ** ** * *** * * * consensus_4983#0 GGCAGCCGTGGAGAGGGG----CTGGAGCACTTTCCTCTTTGGATCCAAAGATCTTGGCA 232 consensus_4983#1 GCATTCTATGCTGTTTAGTCATCTTGAGTGTCTTTTTGTTTG--TGTGAATAGCTTATTT 225 * * ** * * ** *** ** * **** * ** * *** consensus_4983#0 AGGATTGGTCATCTACTGCTCGCATCAATCCTCTTTTTATCGATGGCCTGGAGATATTCG 292 consensus_4983#1 -GAATT--CCATCAATGGTTTGAATGAGTGTCCAGTATA-CGTTTTTTCTGTGTTGTTAG 281 * *** **** * * * * ** * * * * ** ** * * * * ** * consensus_4983#0 ATGAGAAAAAACAAAAGATTGCTGTAATTTCTGAAGTCTCTTCCCCAG---GAGAGCTGG 349 consensus_4983#1 --GATCATTGGCTTGACAT-GCTGTACTGTTTCATATTTGAGCCGCAACTTGCAAAGTAC 338 ** * * * ** ****** * * * * * * ** ** * * * consensus_4983#0 AACTCATACAACCAGACAATGTGGAAGTGGAAAACATCGTGATAGACTTCCGAGGTGGAT 409 consensus_4983#1 ACTTGACAAAACCCAACAA-GCGTTAACAGGTGCCTCCTTTGTC--CTCCTGAATT---T 392 * * * * **** **** * * * * * * * * ** * ** * * consensus_4983#0 GGCAGGTTATACCAGCAGAAAATATAGTTGCTGCATTCCAGGGATGTAGAGGAACTGTAT 469 consensus_4983#1 CGTAGGTTATACCAGCAGAAAATATAGTTGCTGCATTCCAGGGATGTAGAGGAACTGTAT 452 * ********************************************************* consensus_4983#0 TGGCTGTTTCAACAAACTCAACTGAGGCTCAGGTTTTTCTTGAGGCCTTGGAGCAAGGGC 529 consensus_4983#1 TGGCTGTTTCAACAAACTCAACTGAGGCTCAGGTTTTTCTTGAGGTAACTGTCAAGATGT 512 ********************************************* * * * consensus_4983#0 TTGATGGAGTTATACTTAAAGTAGAGGACATGGATGATATTATCAAACTC--AAGGATTA 587 consensus_4983#1 TTCA---ACATACAATAGAAGTTCCTGTGTATAATGATGT-ATCGTGTTCCTATCAATTA 568 ** * * ** * * **** * ***** * *** ** * **** consensus_4983#0 TTTTGACAGAAGGAACGAGGCAAAGAGCCAGTTAATGTTGACAAAGGCTACTGTGTCAAA 647 consensus_4983#1 TCTTTTGTGAAG---TTGTTCCCCCAGTTACTTAGTTACTTTACAGGCCTTGGAGCAAGG 625 * ** **** * ** * *** * * **** * * * consensus_4983#0 GGTTGAAGTTGTTGGTATGGGTGATCGTGTTTGTGTGGATCTTTGCAGTATGATGCGACC 707 consensus_4983#1 GCTTGA---TGGAGTTATACTTAAAGTAGAGGACATGGATG------------------- 663 * **** ** * *** * * * ***** consensus_4983#0 TGGTGAAGGCCTTCTGGTTGGCTCCTATGCAAGAGGAATGTTTCTTGTTCACTCTGAATG 767 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 CCTGGAGACAAATTATATTGCAAGCAGGCCTTTCAGGGTCAATGCGGGCCCTGTTCATGC 827 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 ATATGTTGCAGTCCCTGGTGGCCGAACTAGTTACCTCTCAGAGCTGCAATCAGGTCGGGA 887 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 AGTAATAGTTGTTGATCAAAATGGTTTGTGGCGTACTGCGATTGTTGGTCGTGTTAAGAT 947 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 TGAATCAAGGCCTCTAATCCTTGTAGAAGCAAAGGAGAACGGTGGAGATGATACTTACAG 1007 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 CATTTTCCTGCAAAATGCCGAGACAGTTGCACTTATCACTCCTGAAAAAGGATCTAGTGG 1067 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 AAGAACTGCTATACCTGTGACTTCACTGAAAGTTGGTGATGAGGTTTTGGTGAGGAAACA 1127 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 GGGCGGTGCCCGTCACACTGGAATAGAGATTCAGGAGTTTATTGTTGAGAAATGAGACTG 1187 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 CGTCAGTTATTCAGTTACCTGCTAGCAGGCCAGTCTTTGTTCTTCCCAAACAATTCTTTT 1247 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 GCTAATTCATGGGAGTGAAAATTCACACCAACTTATGATAGGGGACTATCTGAATCATCA 1307 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 TTGAATTCGAGCCATGTACATCTGTATATACTATAGTACTAGTAACTTTTAAGTCAAGGA 1367 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 GGAAATTTCCATTTGGATGTNAAAAAAAAAAAAAAA 1403 consensus_4983#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||