These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4990#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1087 fasta sequence [TTCTCTATCTTCTCCGCCTCCGGGAAGAAGGACAAGAGGAGTAGGAGCTCCAGTTGCATGGACAAGGGCCACCTCGGTGGTGGCGGAGGAGGAGGAGGTGGGCTGCTCGCTCTGGACGCGTCGCCGCGCCCGCTCGGCTTCTTGAACCTGCTCTCCCCGCCGCCGTTCCACAGGTCGACCATGGAGGCCGACGACAGCGGCGGTGGCGGCGGCAGGGCACGCAGGTCCGTCGAGGTGGACTTCTTCTCCGACGAGAAGAAGAACATGAAGAAGAGCCGTGTCTCGGGCGGCGTCGCCGCCGAGGCGGACGACGCCAAGGGACCCGCCGCCGCCGGCCTCGCCATCAAGAAGGAGGACCTCACCATTAACCTTCTTCCCGCCGGGAACAACGCGAGGAGCGACCGGTCGATGGTGGTCGACGACGACGCGGCGTCGCGGCCGGATCACGAGGAGAAGAGCCGGAGCAGCAACGAGCTCGCGGCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTGACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAAAGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCTCACCAGGATGGCAAGGCCGAGGGCGCGGTCGTGCCGAGGCAATTCCTCGATCTGGGCCCGTCCTCCGGCGCCGGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGTCGACGGAGGCCGGCAGCCCGCGTCGGTCGTCGTCTACCGGCAACAAGGACCAAGAACGTGGTGACAGCCCGGACGCGCCGCCGGGCGCGCCGAACGCCGTGCCGCTCAACGCCGCGCGGCCGGGCGCGCCGGCGCCGCAGTTCCAGGTGCCGCTGCCAGGCGGAGGGATGGCGCCGGCGTTCGCCGTGCCGCCGCAGGTGCTGTACAACCAGTCCAAGTTCTCCGGCCTGCAGATGTCCTCCGATTCAGCCGAGGCCGCCGCCGCCGCCGCCGCCGCCGCGCAGTTCGCGCAACCGAGGCCGCCGATCGGGCAGCTGCCTGGCCCTCTCTCCG] [+] EMBL AK105509 [TTCTCTATCTTCTCCGCCTCCGGGAAGAAGGACAAGAGGAGTAGGAGCTCCAGTTGCATGGACAAGGGCCACCTCGGTGGTGGCGGAGGAGGAGGAGGTGGGCTGCTCGCTCTGGACGCGTCGCCGCGCCCGCTCGGCTTCTTGAACCTGCTCTCCCCGCCGCCGTTCCACAGGTCGACCATGGAGGCCGACGACAGCGGCGGTGGCGGCGGCAGGGCACGCAGGTCCGTCGAGGTGGACTTCTTCTCCGACGAGAAGAAGAACATGAAGAAGAGCCGTGTCTCGGGCGGCGTCGCCGCCGAGGCGGACGACGCCAAGGGACCCGCCGCCGCCGGCCTCGCCATCAAGAAGGAGGACCTCACCATTAACCTTCTTCCCGCCGGGAACAACGCGAGGAGCGACCGGTCGATGGTGGTCGACGACGACGCGGCGTCGCGGCCGGATCACGAGGAGAAGAGCCGGAGCAGCAACGAGCTCGCGGCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTGACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAAAGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCTCACCAGGATGGCAAGGCCGAGGGCGCGGTCGTGCCGAGGCAATTCCTCGATCTGGGCCCGTCCTCCGGCGCCGGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGTCGACGGAGGCCGGCAGCCCGCGTCGGTCGTCGTCTACCGGCAACAAGGACCAAGAACGTGGTGACAGCCCGGACGCGCCGCCGGGCGCGCCGAACGCCGTGCCGCTCAACGCCGCGCGGCCGGGCGCGCCGGCGCCGCAGTTCCAGGTGCCGCTGCCAGGCGGAGGGATGGCGCCGGCGTTCGCCGTGCCGCCGCAGGTGCTGTACAACCAGTCCAAGTTCTCCGGCCTGCAGATGTCCTCCGATTCAGCCGAGGCCGCCGCCGCCGCCGCCGCCGCCGCGCAGTTCGCGCAACCGAGGCCGCCGATCGGGCAGCTGCCTGGCCCTCTCTCCG] [+] EMBL C26525 [ AACGAGCTCGCGGCGATGCAGGCGGAG TGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTGACCCAGGTNACCACCAGCTACCAGGCGCTGCAGATGCATCTNGTCGCGCTCATGCAGCAAAGGCCTCAAATNATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGTCTCACCAGGATGGCAAGGCCGAGGGCGCGGTCGTNCCGAGGCAATTCCTCGATC ] consensusID : consensus_4990#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [AACGAGCTCGCGGCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTGACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAAAGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCTCACCAGGATGGCAAGGCCGAGGGCGCGGTCGTGCCCGAGGCAATTCCTCGATCTGGGCCCGTCCTCCGGCGCCGGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGTTCGACGGAGGCCGGCAGCCCCGCGTTCGGTCGTTCGTCTACCCGGGAACAAGGACCAAAGAAACGTGGTTGACAGCCCCGGACGCCGCCGTCCAACGGGCGGGCNGGCGTTGGTTTGCCNGGAACGCCGCCCATTGGCGCC] [+] EMBL AU166479 [AACGAGCTCGCGGCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTGACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAAAGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCTCACCAGGATGGCAAGGCCGAGGGCGCGGTCGTGCCCGAGGCAATTCCTCGATCTGGGCCCGTCCTCCGGCGCCGGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGTTCGACGGAGGCCGGCAGCCCCGCGTTCGGTCGTTCGTCTACCCGGGAACAAGGACCAAAGAAACGTGGTTGACAGCCCCGGACGCCGCCGTCCAACGGGCGGGCNGGCGTTGGTTTGCCNGGAACGCCGCCCATTGGCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4990#0 TTCTCTATCTTCTCCGCCTCCGGGAAGAAGGACAAGAGGAGTAGGAGCTCCAGTTGCATG 60 consensus_4990#1 ------------------------------------------------------------ consensus_4990#0 GACAAGGGCCACCTCGGTGGTGGCGGAGGAGGAGGAGGTGGGCTGCTCGCTCTGGACGCG 120 consensus_4990#1 ------------------------------------------------------------ consensus_4990#0 TCGCCGCGCCCGCTCGGCTTCTTGAACCTGCTCTCCCCGCCGCCGTTCCACAGGTCGACC 180 consensus_4990#1 ------------------------------------------------------------ consensus_4990#0 ATGGAGGCCGACGACAGCGGCGGTGGCGGCGGCAGGGCACGCAGGTCCGTCGAGGTGGAC 240 consensus_4990#1 ------------------------------------------------------------ consensus_4990#0 TTCTTCTCCGACGAGAAGAAGAACATGAAGAAGAGCCGTGTCTCGGGCGGCGTCGCCGCC 300 consensus_4990#1 ------------------------------------------------------------ consensus_4990#0 GAGGCGGACGACGCCAAGGGACCCGCCGCCGCCGGCCTCGCCATCAAGAAGGAGGACCTC 360 consensus_4990#1 ------------------------------------------------------------ consensus_4990#0 ACCATTAACCTTCTTCCCGCCGGGAACAACGCGAGGAGCGACCGGTCGATGGTGGTCGAC 420 consensus_4990#1 ------------------------------------------------------------ consensus_4990#0 GACGACGCGGCGTCGCGGCCGGATCACGAGGAGAAGAGCCGGAGCAGCAACGAGCTCGCG 480 consensus_4990#1 ------------------------------------------------AACGAGCTCGCG 12 ************ consensus_4990#0 GCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTG 540 consensus_4990#1 GCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTG 72 ************************************************************ consensus_4990#0 ACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAA 600 consensus_4990#1 ACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAA 132 ************************************************************ consensus_4990#0 AGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCTCACCAGGATGGC 660 consensus_4990#1 AGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCTCACCAGGATGGC 192 ************************************************************ consensus_4990#0 AAGGCCGAGGGCGCGGTCGTGCC-GAGGCAATTCCTCGATCTGGGCCCGTCCTCCGGCGC 719 consensus_4990#1 AAGGCCGAGGGCGCGGTCGTGCCCGAGGCAATTCCTCGATCTGGGCCCGTCCTCCGGCGC 252 *********************** ************************************ consensus_4990#0 CGGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGT-CGACGGAGGCCGGCAGCCC-GCGT 777 consensus_4990#1 CGGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGTTCGACGGAGGCCGGCAGCCCCGCGT 312 *********************************** ******************* **** consensus_4990#0 -CGGTCGT-CGTCTACC-GGCAACAAGGACCAAG--AACGTGGT-GACAGCCCGGACGCG 831 consensus_4990#1 TCGGTCGTTCGTCTACCCGGGAACAAGGACCAAAGAAACGTGGTTGACAGCCCCGG-ACG 371 ******* ******** ** ************ ******** ******** * ** consensus_4990#0 CCGCCGGGCGCGCCGAACGCCGTGCCGCTCAACGCCGCGCGGCCGGGCGCGCCGGCGCCG 891 consensus_4990#1 CCGCC--GTCCAACGGGCGGGCNGGCGTTGGTTTGCCNGGAACGCCGCCCATTGGCGCC- 428 ***** * * ** ** * ** * * * * ** * ****** consensus_4990#0 CAGTTCCAGGTGCCGCTGCCAGGCGGAGGGATGGCGCCGGCGTTCGCCGTGCCGCCGCAG 951 consensus_4990#1 ------------------------------------------------------------ consensus_4990#0 GTGCTGTACAACCAGTCCAAGTTCTCCGGCCTGCAGATGTCCTCCGATTCAGCCGAGGCC 1011 consensus_4990#1 ------------------------------------------------------------ consensus_4990#0 GCCGCCGCCGCCGCCGCCGCCGCGCAGTTCGCGCAACCGAGGCCGCCGATCGGGCAGCTG 1071 consensus_4990#1 ------------------------------------------------------------ consensus_4990#0 CCTGGCCCTCTCTCCG 1087 consensus_4990#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||