cluster # 4990

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Oryza sativa
cluster # 4990 cluster # 4990 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4990#0 length = 1087 sequences # 2

consensus_4990#1 length = 428 sequences # 1

consensusID : consensus_4990#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1087
fasta sequence

                              [TTCTCTATCTTCTCCGCCTCCGGGAAGAAGGACAAGAGGAGTAGGAGCTCCAGTTGCATGGACAAGGGCCACCTCGGTGGTGGCGGAGGAGGAGGAGGTGGGCTGCTCGCTCTGGACGCGTCGCCGCGCCCGCTCGGCTTCTTGAACCTGCTCTCCCCGCCGCCGTTCCACAGGTCGACCATGGAGGCCGACGACAGCGGCGGTGGCGGCGGCAGGGCACGCAGGTCCGTCGAGGTGGACTTCTTCTCCGACGAGAAGAAGAACATGAAGAAGAGCCGTGTCTCGGGCGGCGTCGCCGCCGAGGCGGACGACGCCAAGGGACCCGCCGCCGCCGGCCTCGCCATCAAGAAGGAGGACCTCACCATTAACCTTCTTCCCGCCGGGAACAACGCGAGGAGCGACCGGTCGATGGTGGTCGACGACGACGCGGCGTCGCGGCCGGATCACGAGGAGAAGAGCCGGAGCAGCAACGAGCTCGCGGCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTGACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAAAGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCTCACCAGGATGGCAAGGCCGAGGGCGCGGTCGTGCCGAGGCAATTCCTCGATCTGGGCCCGTCCTCCGGCGCCGGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGTCGACGGAGGCCGGCAGCCCGCGTCGGTCGTCGTCTACCGGCAACAAGGACCAAGAACGTGGTGACAGCCCGGACGCGCCGCCGGGCGCGCCGAACGCCGTGCCGCTCAACGCCGCGCGGCCGGGCGCGCCGGCGCCGCAGTTCCAGGTGCCGCTGCCAGGCGGAGGGATGGCGCCGGCGTTCGCCGTGCCGCCGCAGGTGCTGTACAACCAGTCCAAGTTCTCCGGCCTGCAGATGTCCTCCGATTCAGCCGAGGCCGCCGCCGCCGCCGCCGCCGCCGCGCAGTTCGCGCAACCGAGGCCGCCGATCGGGCAGCTGCCTGGCCCTCTCTCCG]

[+] EMBL AK105509             [TTCTCTATCTTCTCCGCCTCCGGGAAGAAGGACAAGAGGAGTAGGAGCTCCAGTTGCATGGACAAGGGCCACCTCGGTGGTGGCGGAGGAGGAGGAGGTGGGCTGCTCGCTCTGGACGCGTCGCCGCGCCCGCTCGGCTTCTTGAACCTGCTCTCCCCGCCGCCGTTCCACAGGTCGACCATGGAGGCCGACGACAGCGGCGGTGGCGGCGGCAGGGCACGCAGGTCCGTCGAGGTGGACTTCTTCTCCGACGAGAAGAAGAACATGAAGAAGAGCCGTGTCTCGGGCGGCGTCGCCGCCGAGGCGGACGACGCCAAGGGACCCGCCGCCGCCGGCCTCGCCATCAAGAAGGAGGACCTCACCATTAACCTTCTTCCCGCCGGGAACAACGCGAGGAGCGACCGGTCGATGGTGGTCGACGACGACGCGGCGTCGCGGCCGGATCACGAGGAGAAGAGCCGGAGCAGCAACGAGCTCGCGGCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTGACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAAAGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCTCACCAGGATGGCAAGGCCGAGGGCGCGGTCGTGCCGAGGCAATTCCTCGATCTGGGCCCGTCCTCCGGCGCCGGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGTCGACGGAGGCCGGCAGCCCGCGTCGGTCGTCGTCTACCGGCAACAAGGACCAAGAACGTGGTGACAGCCCGGACGCGCCGCCGGGCGCGCCGAACGCCGTGCCGCTCAACGCCGCGCGGCCGGGCGCGCCGGCGCCGCAGTTCCAGGTGCCGCTGCCAGGCGGAGGGATGGCGCCGGCGTTCGCCGTGCCGCCGCAGGTGCTGTACAACCAGTCCAAGTTCTCCGGCCTGCAGATGTCCTCCGATTCAGCCGAGGCCGCCGCCGCCGCCGCCGCCGCCGCGCAGTTCGCGCAACCGAGGCCGCCGATCGGGCAGCTGCCTGGCCCTCTCTCCG]
[+] EMBL C26525               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AACGAGCTCGCGGCGATGCAGGCGGAG TGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTGACCCAGGTNACCACCAGCTACCAGGCGCTGCAGATGCATCTNGTCGCGCTCATGCAGCAAAGGCCTCAAATNATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGTCTCACCAGGATGGCAAGGCCGAGGGCGCGGTCGTNCCGAGGCAATTCCTCGATC                                                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_4990#0
TTCTCTATCTTCTCCGCCTCCGGGAAGAAGGACAAGAGGAGTAGGAGCTCCAGTTGCATG
GACAAGGGCCACCTCGGTGGTGGCGGAGGAGGAGGAGGTGGGCTGCTCGCTCTGGACGCG
TCGCCGCGCCCGCTCGGCTTCTTGAACCTGCTCTCCCCGCCGCCGTTCCACAGGTCGACC
ATGGAGGCCGACGACAGCGGCGGTGGCGGCGGCAGGGCACGCAGGTCCGTCGAGGTGGAC
TTCTTCTCCGACGAGAAGAAGAACATGAAGAAGAGCCGTGTCTCGGGCGGCGTCGCCGCC
GAGGCGGACGACGCCAAGGGACCCGCCGCCGCCGGCCTCGCCATCAAGAAGGAGGACCTC
ACCATTAACCTTCTTCCCGCCGGGAACAACGCGAGGAGCGACCGGTCGATGGTGGTCGAC
GACGACGCGGCGTCGCGGCCGGATCACGAGGAGAAGAGCCGGAGCAGCAACGAGCTCGCG
GCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTG
ACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAA
AGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCTCACCAGGATGGC
AAGGCCGAGGGCGCGGTCGTGCCGAGGCAATTCCTCGATCTGGGCCCGTCCTCCGGCGCC
GGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGTCGACGGAGGCCGGCAGCCCGCGTCGG
TCGTCGTCTACCGGCAACAAGGACCAAGAACGTGGTGACAGCCCGGACGCGCCGCCGGGC
GCGCCGAACGCCGTGCCGCTCAACGCCGCGCGGCCGGGCGCGCCGGCGCCGCAGTTCCAG
GTGCCGCTGCCAGGCGGAGGGATGGCGCCGGCGTTCGCCGTGCCGCCGCAGGTGCTGTAC
AACCAGTCCAAGTTCTCCGGCCTGCAGATGTCCTCCGATTCAGCCGAGGCCGCCGCCGCC
GCCGCCGCCGCCGCGCAGTTCGCGCAACCGAGGCCGCCGATCGGGCAGCTGCCTGGCCCT
CTCTCCG

consensusID : consensus_4990#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [AACGAGCTCGCGGCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTGACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAAAGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCTCACCAGGATGGCAAGGCCGAGGGCGCGGTCGTGCCCGAGGCAATTCCTCGATCTGGGCCCGTCCTCCGGCGCCGGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGTTCGACGGAGGCCGGCAGCCCCGCGTTCGGTCGTTCGTCTACCCGGGAACAAGGACCAAAGAAACGTGGTTGACAGCCCCGGACGCCGCCGTCCAACGGGCGGGCNGGCGTTGGTTTGCCNGGAACGCCGCCCATTGGCGCC]

[+] EMBL AU166479             [AACGAGCTCGCGGCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTGACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAAAGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCTCACCAGGATGGCAAGGCCGAGGGCGCGGTCGTGCCCGAGGCAATTCCTCGATCTGGGCCCGTCCTCCGGCGCCGGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGTTCGACGGAGGCCGGCAGCCCCGCGTTCGGTCGTTCGTCTACCCGGGAACAAGGACCAAAGAAACGTGGTTGACAGCCCCGGACGCCGCCGTCCAACGGGCGGGCNGGCGTTGGTTTGCCNGGAACGCCGCCCATTGGCGCC]




>consensus_4990#1
AACGAGCTCGCGGCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTC
CGGGGGATGCTGACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCG
CTCATGCAGCAAAGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCT
CACCAGGATGGCAAGGCCGAGGGCGCGGTCGTGCCCGAGGCAATTCCTCGATCTGGGCCC
GTCCTCCGGCGCCGGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGTTCGACGGAGGCCG
GCAGCCCCGCGTTCGGTCGTTCGTCTACCCGGGAACAAGGACCAAAGAAACGTGGTTGAC
AGCCCCGGACGCCGCCGTCCAACGGGCGGGCNGGCGTTGGTTTGCCNGGAACGCCGCCCA
TTGGCGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4990#0      TTCTCTATCTTCTCCGCCTCCGGGAAGAAGGACAAGAGGAGTAGGAGCTCCAGTTGCATG 60
consensus_4990#1      ------------------------------------------------------------
                                                                                  

consensus_4990#0      GACAAGGGCCACCTCGGTGGTGGCGGAGGAGGAGGAGGTGGGCTGCTCGCTCTGGACGCG 120
consensus_4990#1      ------------------------------------------------------------
                                                                                  

consensus_4990#0      TCGCCGCGCCCGCTCGGCTTCTTGAACCTGCTCTCCCCGCCGCCGTTCCACAGGTCGACC 180
consensus_4990#1      ------------------------------------------------------------
                                                                                  

consensus_4990#0      ATGGAGGCCGACGACAGCGGCGGTGGCGGCGGCAGGGCACGCAGGTCCGTCGAGGTGGAC 240
consensus_4990#1      ------------------------------------------------------------
                                                                                  

consensus_4990#0      TTCTTCTCCGACGAGAAGAAGAACATGAAGAAGAGCCGTGTCTCGGGCGGCGTCGCCGCC 300
consensus_4990#1      ------------------------------------------------------------
                                                                                  

consensus_4990#0      GAGGCGGACGACGCCAAGGGACCCGCCGCCGCCGGCCTCGCCATCAAGAAGGAGGACCTC 360
consensus_4990#1      ------------------------------------------------------------
                                                                                  

consensus_4990#0      ACCATTAACCTTCTTCCCGCCGGGAACAACGCGAGGAGCGACCGGTCGATGGTGGTCGAC 420
consensus_4990#1      ------------------------------------------------------------
                                                                                  

consensus_4990#0      GACGACGCGGCGTCGCGGCCGGATCACGAGGAGAAGAGCCGGAGCAGCAACGAGCTCGCG 480
consensus_4990#1      ------------------------------------------------AACGAGCTCGCG 12
                                                                      ************

consensus_4990#0      GCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTG 540
consensus_4990#1      GCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTG 72
                      ************************************************************

consensus_4990#0      ACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAA 600
consensus_4990#1      ACCCAGGTGACCACCAGCTACCAGGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAA 132
                      ************************************************************

consensus_4990#0      AGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCTCACCAGGATGGC 660
consensus_4990#1      AGGCCTCAAATGATGCAGCCTCCGACCCAGCCGGAGCCACCTCCGCCTCACCAGGATGGC 192
                      ************************************************************

consensus_4990#0      AAGGCCGAGGGCGCGGTCGTGCC-GAGGCAATTCCTCGATCTGGGCCCGTCCTCCGGCGC 719
consensus_4990#1      AAGGCCGAGGGCGCGGTCGTGCCCGAGGCAATTCCTCGATCTGGGCCCGTCCTCCGGCGC 252
                      *********************** ************************************

consensus_4990#0      CGGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGT-CGACGGAGGCCGGCAGCCC-GCGT 777
consensus_4990#1      CGGCGGCGAGGCGGCGGAGGAGCCGTCCAACTCGTTCGACGGAGGCCGGCAGCCCCGCGT 312
                      *********************************** ******************* ****

consensus_4990#0      -CGGTCGT-CGTCTACC-GGCAACAAGGACCAAG--AACGTGGT-GACAGCCCGGACGCG 831
consensus_4990#1      TCGGTCGTTCGTCTACCCGGGAACAAGGACCAAAGAAACGTGGTTGACAGCCCCGG-ACG 371
                       ******* ******** ** ************   ******** ******** *   **

consensus_4990#0      CCGCCGGGCGCGCCGAACGCCGTGCCGCTCAACGCCGCGCGGCCGGGCGCGCCGGCGCCG 891
consensus_4990#1      CCGCC--GTCCAACGGGCGGGCNGGCGTTGGTTTGCCNGGAACGCCGCCCATTGGCGCC- 428
                      *****  *  *  **  **    * ** *      *  *   *   ** *   ****** 

consensus_4990#0      CAGTTCCAGGTGCCGCTGCCAGGCGGAGGGATGGCGCCGGCGTTCGCCGTGCCGCCGCAG 951
consensus_4990#1      ------------------------------------------------------------
                                                                                  

consensus_4990#0      GTGCTGTACAACCAGTCCAAGTTCTCCGGCCTGCAGATGTCCTCCGATTCAGCCGAGGCC 1011
consensus_4990#1      ------------------------------------------------------------
                                                                                  

consensus_4990#0      GCCGCCGCCGCCGCCGCCGCCGCGCAGTTCGCGCAACCGAGGCCGCCGATCGGGCAGCTG 1071
consensus_4990#1      ------------------------------------------------------------
                                                                                  

consensus_4990#0      CCTGGCCCTCTCTCCG 1087
consensus_4990#1      ----------------