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Oryza sativa
cluster # 4998 cluster # 4998       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4998#0 length = 1937 sequences # 3  

consensusID : consensus_4998#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1937
fasta sequence
                              [GATCGCTCGCCTGCCTTGCCTGCCCGTCCGCCTAACCGACACCGCAACAAACCACAGCCACACAGCTTCTCTCTGTTGCTCGCTTTACTGTGCGTGCTGTATATACACCCGGTGGATGAGGGATCTAGCTAACTAGCTTAGCTAGACAGCGTGTGTTGGTGGTNGTGGTGGTGTGTGTGTGTGTGAGGAGGGTGATCGATCGATCGAGCGATGGAGAGCCCGGACTCGTCGTCCNGCTCGGCGCCACCGCGAGTACTACGGCGGCAACAGCAGCAGCCGGGCTCGGCGCCGGAGCTGCCGCCGGGGTTCCGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCACTACCTCAAGAAGAAGGCCGCCTCCGTTCCGCTCCCCGTCACCATCATCGCCGAGGTCGATCTCTACAAGTTCGATCCCTGGGATCTCCCCGAGAAGGCGAACTTCGGGGAGCAGGAGTGGTATTTCTTCAGCCCGAGGGACCACAAGTACCCGAACGGGGCGCGGCCGAACCGGGCGGCGACGTCGGGGTACTGGAAGGCCACCGGCACCGACAAGCCCATCATGTCGTCGGGGAGCACCCGCGAGAAGGTCGGCGTGAAGAAGGCGCTCGTGTTCTACCGGGGCAAGCCACCCAAGGGCGTCAAGACTAACTGGATCATGCACGAGTACCGTCTCACGGACACGTCTAGCTCCGCCGCCGCCGTCGCTACGACCAGGCGGCCGCCGCCGCCCATCACCGGCGGTAGCAAGGGCGCCGTCTCTCTCAGGCTGGATGACTGGGTGCTGTGCCGCATATACAAGAAGACGAACAAGGCCGGTGCGGGGCAGAGGAGCATGGAGTGCGAGGACTCCGTGGAGGACGCGGTGGCCGCGTACGCGCCGTCGTCGCAGCAGCATGCCACGGCTGCTGCTGGCATGGCCGGTTCGGACGGCGCCGGAGGAGTTGCTGCAGCGCACGGCGGCGACTACAGTTCACTGCTCCATCACGACAGCCACGAGGACACCTTCCTCGTAAACGGCCTGCTCACCGCGGAGGACGCCGCCGGCCTCTCGACCGGCGCCAGCTCTCTCAGCCAGCTCGCCGCGGCGGCGAGGGCGGCGGCGACACCGTGCGACGCCACCAAGCAGCTTCTTGCTCCGTCTCCAACCCCATTCAACTGGTTCGAGGCATTCCTTCCACGGGCCAAGGAGTTTCCTAGTGGGCTAAGCAGGAGTAGCAGAGACATCGGCGACATGTCGCTGTCATCGACGGTGGACAGGAGCCTGTCTGAGGCTGGCGCCGTGGCCATTGACACCGGCGACGCCGCCAATGGCGCAAACACTATGCCTGCATTTATCAATCCTCTCGGCGTGCAGGGTGCAACCTACCAACAACACCAAGCCATCATGGGTGCCTCGTTGCCATCGGAGTCAGCAGCAGCAGCAGCCGCCTGCAATTTCCAGCATCCGTTCCAACTCTCCAGGGTGAATTGGGATTCCTGAATAAAAGGTGCCGGCATTATGCATACACATATATGCACATGCATACATGCATGGCTTTTCAAGTAGTAGCACAACATTACTAGTAATTAATCACACTAATGTGTGTGGCAGTCGCATTCAGTGAGCACTGATCGAGTAGTTGCATGAACACAACACTAATGCATGCACTACATATATATGGCCGCATTGCTCCTAGGGCACGTACCTGTACGAACTAGGTAAGTGACCTAACCAGCTAGATCATGTTCAGAATAAGGAGAAGAAGCCGCATGCAAACACGTAGATCATATGGCTTTGCCTTCACATGCGTTTGCATCATATATATCGCATTCAGAAAGTAGTGCTGCAGCTAACACATAGATATGGTGTTAGCTTCATGCGTTTGTACCATATATAGCGGATGCAGAAAGTAGCTAGTTGCACTGTTCATCATTATCCCATGAGATATG]

[+] EMBL OSC637               [GATCGCTCGCCTGCCTTGCCTGCCCGTCCGCCTAACCGACACCGCAACAAACCACAGCCACACAGCTTCTCTCTGTTGCTCGCTTTACTGTGCGTGCTGTATATACACCCGGTGGATGAGGGATCTAGCTAACTAGCTTAGCTAGACAGCGTGTGTTGGTGGTNGTGGTGGTGTGTGTGTGTGTGAGGAGGGTGATCGATCGATCGAGCGATGGAGAGCCCGGACTCGTCGTCCNGCTCGGCGCCACCGCGAGTACTACGGCGGCAACAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK063406             [                                                                                                                                           AGCTAGACAGCGTGTGTTGGTGGTGGTGGTGGTGTGTGTGTGTGTGAGGAGGGTGATCGATCGATCGAGCGATGGAGAGCCCGGACTCGTCGTCCGGCTCGGCGCCACCGCGAGTACTACGGCGGCAACAGCAGCAGCCGGGCTCGGCGCCGGAGCTGCCGCCGGGGTTCCGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCACTACCTCAAGAAGAAGGCCGCCTCCGTTCCGCTCCCCGTCACCATCATCGCCGAGGTCGATCTCTACAAGTTCGATCCCTGGGATCTCCCCGAGAAGGCGAACTTCGGGGAGCAGGAGTGGTATTTCTTCAGCCCGAGGGACCACAAGTACCCGAACGGGGCGCGGCCGAACCGGGCGGCGACGTCGGGGTACTGGAAGGCCACCGGCACCGACAAGCCCATCATGTCGTCGGGGAGCACCCGCGAGAAGGTCGGCGTGAAGAAGGCGCTCGTGTTCTACCGGGGCAAGCCACCCAAGGGCGTCAAGACTAACTGGATCATGCACGAGTACCGTCTCACGGACACGTCTAGCTCCGCCGCCGCCGTCGCTACGACCAGGCGGCCGCCGCCGCCCATCACCGGCGGTAGCAAGGGCGCCGTCTCTCTCAGGCTGGATGACTGGGTGCTGTGCCGCATATACAAGAAGACGAACAAGGCCGGTGCGGGGCAGAGGAGCATGGAGTGCGAGGACTCCGTGGAGGACGCGGTGGCCGCGTACGCGCCGTCGTCGCAGCAGCATGCCACGGCTGCTGCTGGCATGGCCGGTTCGGACGGCGCCGGAGGAGTTGCTGCAGCGCACGGCGGCGACTACAGTTCACTGCTCCATCACGACAGCCACGAGGACACCTTCCTCGTAAACGGCCTGCTCACCGCGGAGGACGCCGCCGGCCTCTCGACCGGCGCCAGCTCTCTCAGCCAGCTCGCCGCGGCGGCGAGGGCGGCGGCGACACCGTGCGACGCCACCAAGCAGCTTCTTGCTCCGTCTCCAACCCCATTCAACTGGTTCGAGGCATTCCTTCCACGGGCCAAGGAGTTTCCTAGTGGGCTAAGCAGGAGTAGCAGAGACATCGGCGACATGTCGCTGTCATCGACGGTGGACAGGAGCCTGTCTGAGGCTGGCGCCGTGGCCATTGACACCGGCGACGCCGCCAATGGCGCAAACACTATGCCTGCATTTATCAATCCTCTCGGCGTGCAGGGTGCAACCTACCAACAACACCAAGCCATCATGGGTGCCTCGTTGCCATCGGAGTCAGCAGCAGCAGCAGCCGCCTGCAATTTCCAGCATCCGTTCCAACTCTCCAGGGTGAATTGGGATTCCTGAATAAAAGGTGCCGGCATTATGCATACACATATATGCACATGCATACATGCATGGCTTTTCAAGTAGTAGCACAACATTACTAGTAATTAATCACACTAATGTGTGTGGCAGTCGCATTCAGTGAGCACTGATCGAGTAGTTGCATGAACACAACACTAATGCATGCACTACATATATATGGCCGCATTGCTCCTAGGGCACGTACCTGTACGAACTAGGTAAGTGACCTAACCAGCTAGATCATGTTCAGAATAAGGAGAAGAAGCCGCATGCAAACACGTAGATCATATGGCTTTGCCTTCACATGCGTTTGCATCATATATATCGCATTCAGAAAGTAGTGCTGCAGCTAACACATAGATATGGTGTTAGCTTCATGCGTTTGTACCATATATAGCGGATGCAGAAAGTAGCTAGTTGCACTGTTCATCATTATCCCATGAGATATG]
[+] EMBL C99336               [                                                                                                                                                                                                                                                                                                                                                                                                 CCATCATCGCCGAGGTCGATCTCTACAAGTTCGATCCCTGGGATCTCCCCGAGAAGGCGAACTTCGGGGAGCAGGAGTGGTATTTCTTCAGCCCGAGGGACCGCAAGTACCCGAACGGGGCGCGGCCGAACCGGGCGGCGACGTCGGGGTACTGGAAGGCCACCGGCACCGACAAGCCCATCATGTCGTCGGGGAGCACCCGCGAGAAGGTCGGCGTGAAGAAGGCGCTCGTGTTCTACCGGGGCAAGCCACCCAAGAGCGTCAAGACTAACTGGATCATGCACGAGTACCGTCTCACGGACACGTCTAG TCCGCCGCCGCCGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]


>consensus_4998#0 GATCGCTCGCCTGCCTTGCCTGCCCGTCCGCCTAACCGACACCGCAACAAACCACAGCCA CACAGCTTCTCTCTGTTGCTCGCTTTACTGTGCGTGCTGTATATACACCCGGTGGATGAG GGATCTAGCTAACTAGCTTAGCTAGACAGCGTGTGTTGGTGGTNGTGGTGGTGTGTGTGT GTGTGAGGAGGGTGATCGATCGATCGAGCGATGGAGAGCCCGGACTCGTCGTCCNGCTCG GCGCCACCGCGAGTACTACGGCGGCAACAGCAGCAGCCGGGCTCGGCGCCGGAGCTGCCG CCGGGGTTCCGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCACTACCTCAAGAAGAAG GCCGCCTCCGTTCCGCTCCCCGTCACCATCATCGCCGAGGTCGATCTCTACAAGTTCGAT CCCTGGGATCTCCCCGAGAAGGCGAACTTCGGGGAGCAGGAGTGGTATTTCTTCAGCCCG AGGGACCACAAGTACCCGAACGGGGCGCGGCCGAACCGGGCGGCGACGTCGGGGTACTGG AAGGCCACCGGCACCGACAAGCCCATCATGTCGTCGGGGAGCACCCGCGAGAAGGTCGGC GTGAAGAAGGCGCTCGTGTTCTACCGGGGCAAGCCACCCAAGGGCGTCAAGACTAACTGG ATCATGCACGAGTACCGTCTCACGGACACGTCTAGCTCCGCCGCCGCCGTCGCTACGACC AGGCGGCCGCCGCCGCCCATCACCGGCGGTAGCAAGGGCGCCGTCTCTCTCAGGCTGGAT GACTGGGTGCTGTGCCGCATATACAAGAAGACGAACAAGGCCGGTGCGGGGCAGAGGAGC ATGGAGTGCGAGGACTCCGTGGAGGACGCGGTGGCCGCGTACGCGCCGTCGTCGCAGCAG CATGCCACGGCTGCTGCTGGCATGGCCGGTTCGGACGGCGCCGGAGGAGTTGCTGCAGCG CACGGCGGCGACTACAGTTCACTGCTCCATCACGACAGCCACGAGGACACCTTCCTCGTA AACGGCCTGCTCACCGCGGAGGACGCCGCCGGCCTCTCGACCGGCGCCAGCTCTCTCAGC CAGCTCGCCGCGGCGGCGAGGGCGGCGGCGACACCGTGCGACGCCACCAAGCAGCTTCTT GCTCCGTCTCCAACCCCATTCAACTGGTTCGAGGCATTCCTTCCACGGGCCAAGGAGTTT CCTAGTGGGCTAAGCAGGAGTAGCAGAGACATCGGCGACATGTCGCTGTCATCGACGGTG GACAGGAGCCTGTCTGAGGCTGGCGCCGTGGCCATTGACACCGGCGACGCCGCCAATGGC GCAAACACTATGCCTGCATTTATCAATCCTCTCGGCGTGCAGGGTGCAACCTACCAACAA CACCAAGCCATCATGGGTGCCTCGTTGCCATCGGAGTCAGCAGCAGCAGCAGCCGCCTGC AATTTCCAGCATCCGTTCCAACTCTCCAGGGTGAATTGGGATTCCTGAATAAAAGGTGCC GGCATTATGCATACACATATATGCACATGCATACATGCATGGCTTTTCAAGTAGTAGCAC AACATTACTAGTAATTAATCACACTAATGTGTGTGGCAGTCGCATTCAGTGAGCACTGAT CGAGTAGTTGCATGAACACAACACTAATGCATGCACTACATATATATGGCCGCATTGCTC CTAGGGCACGTACCTGTACGAACTAGGTAAGTGACCTAACCAGCTAGATCATGTTCAGAA TAAGGAGAAGAAGCCGCATGCAAACACGTAGATCATATGGCTTTGCCTTCACATGCGTTT GCATCATATATATCGCATTCAGAAAGTAGTGCTGCAGCTAACACATAGATATGGTGTTAG CTTCATGCGTTTGTACCATATATAGCGGATGCAGAAAGTAGCTAGTTGCACTGTTCATCA TTATCCCATGAGATATG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)