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Oryza sativa
cluster # 5000 cluster # 5000       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5000#0 length = 1749 sequences # 2  
consensus_5000#1 length = 423 sequences # 1  

consensusID : consensus_5000#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1749
fasta sequence
                              [CCTCTACCTCTCCGCATCACCTCGGGCCGCCGCCGCCGCCGCTTCGTCGCCGGCCTCGCCCACTCGGAAATGGCGGAAATGGGCGCCGCCGCCGCCGCCGCGGTGCCGGTTATTCCGGAGGACGTCGTCATCGAGATCCTCGCGCGGGTGCCGGACCCGACGTCCCTCTTCCGCTGCGCCGCAGCGTGCAAGCGGTGGCTCCGCCTCATCGCCGACCAGGCCTTACTCCGCCGCCGCTGGCCGCCGGGCACCCGGGTGCCCTCCCTCCTCGGCTTCTTCGCGCAGCGCCACCAGATCCAGGCCAACGCGAGGCGGAAGCTCACCAAGCTCTTCCCGACCCGCGCGCCGCCGCTCGTCGCAGCGCCGAGCAGGGGCACAGGTGACCCACCCGTTAGCACCGGGCGGCGGCGGCGGCTGTTCCTCACCGACTTCGTCCGCAACGCCGCCGGCGCCGGCCTCTTCGACC-AGGCCAAGCCGTTGGCGGCGCGCGGCGGGCTCCTCCTCGTGCGCGTCCTCCCCTCGCCCTCGCCGGCGCCGCAGAACGCGCTCCACCTCTGCGTCTGCAACCTGCTCACCGGCAGCCACGACGTCCTGCCCCCTCTACCCATGGATTGCTTCGAGAAAGACGGCGCCAGAGGCTACGCCATCCTCACAGCCGCCGACCACCGCGTCAGCCGCAACCCATCAGGTGGCTACAACACCTTCTTCCAGGTGCTCCTCCTCAGCATCCACCATGGCAACCATCAGGTATACCTCCACAGATTCTCCTCAGCCGCTGCCAGTGCCGCCGCGGCGGCGGTCATTTTTGAGATATCCTGGAGCACGCCCAGAAATTGCTCTGAACAAATCCGGGGCTATGTCTGGGGTCCCTCTGGAAACAGAGTTGCAGCTGTCAGCCATGGCGGCGCACACTGGCTCTTCAGTTGGGGAGAAGAAAGCCTCTACACCCTTGATGTGAGCATTGACACAGACAACATCGGCGCAACCAATATCCCAATTGATCCTCCCCCCACTGTCTTCCACCAATCTTGGTTGTACGTAAGCGTCGACGAGAGGCTTTCGCTTCTTTATCTTTGTGACAACAAACTTCATATTTGGACCAAGCTAGAAACACAGGAGAGTGGTCGTTTGCTCTGGAATTGCACCCAATCGATTTGTGTTGGCGTGAAGATGGGGTTGTTTGGAACGGAGTCGCTTTCCACTGTGTGCATAGGGGAGGAGAGTGGCACCATGCTCACCCTCTACCTTTCGGACCCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACGCTGGTTCAACTACATGACGGCTGTGTCCTTTGAGATCAACTGGCATTCATTCTTCTTGACTCGGCTAGGGGACTTCTGTGGAAGATTCTGCTGAAGCTGGAAGAAGTACCTACCCTGGAACAAACAACTAAGGCGATTCAGGAAGCAATTGATGCCCTGCGACCTTCGTGAGCTGGAATTGGTTAGCCTTCTCTTTAGGATCTGTTTTTTTTTTCTCCTTCCTGTTAGTGTGTTTTGCTGCTGCTCAGTCAGTTTGTTCTGAAAGGTTGTGATGTTGTGAGGGTTGATCCCTTTCACCCTTCTGCTTTTGTTTTCTGTGCCTATATGTCAAGCTGGCGACCCCAGCGCTATATAAGGATCAGTTTGCAAATACTTCATGCTTTCTATAAAATGCAGGGCCTCGCGTGGCCTTTCCTCTAAAAAAAAAAAA]

[+] EMBL AK106289             [CCTCTACCTCTCCGCATCACCTCGGGCCGCCGCCGCCGCCGCTTCGTCGCCGGCCTCGCCCACTCGGAAATGGCGGAAATGGGCGCCGCCGCCGCCGCCGCGGTGCCGGTTATTCCGGAGGACGTCGTCATCGAGATCCTCGCGCGGGTGCCGGACCCGACGTCCCTCTTCCGCTGCGCCGCAGCGTGCAAGCGGTGGCTCCGCCTCATCGCCGACCAGGCCTTACTCCGCCGCCGCTGGCCGCCGGGCACCCGGGTGCCCTCCCTCCTCGGCTTCTTCGCGCAGCGCCACCAGATCCAGGCCAACGCGAGGCGGAAGCTCACCAAGCTCTTCCCGACCCGCGCGCCGCCGCTCGTCGCAGCGCCGAGCAGGGGCACAGGTGACCCACCCGTTAGCACCGGGCGGCGGCGGCGGCTGTTCCTCACCGACTTCGTCCGCAACGCCGCCGGCGCCGGCCTCTTCGACC AGGCCAAGCCGTTGGCGGCGCGCGGCGGGCTCCTCCTCGTGCGCGTCCTCCCCTCGCCCTCGCCGGCGCCGCAGAACGCGCTCCACCTCTGCGTCTGCAACCTGCTCACCGGCAGCCACGACGTCCTGCCCCCTCTACCCATGGATTGCTTCGAGAAAGACGGCGCCAGAGGCTACGCCATCCTCACAGCCGCCGACCACCGCGTCAGCCGCAACCCATCAGGTGGCTACAACACCTTCTTCCAGGTGCTCCTCCTCAGCATCCACCATGGCAACCATCAGGTATACCTCCACAGATTCTCCTCAGCCGCTGCCAGTGCCGCCGCGGCGGCGGTCATTTTTGAGATATCCTGGAGCACGCCCAGAAATTGCTCTGAACAAATCCGGGGCTATGTCTGGGGTCCCTCTGGAAACAGAGTTGCAGCTGTCAGCCATGGCGGCGCACACTGGCTCTTCAGTTGGGGAGAAGAAAGCCTCTACACCCTTGATGTGAGCATTGACACAGACAACATCGGCGCAACCAATATCCCAATTGATCCTCCCCCCACTGTCTTCCACCAATCTTGGTTGTACGTAAGCGTCGACGAGAGGCTTTCGCTTCTTTATCTTTGTGACAACAAACTTCATATTTGGACCAAGCTAGAAACACAGGAGAGTGGTCGTTTGCTCTGGAATTGCACCCAATCGATTTGTGTTGGCGTGAAGATGGGGTTGTTTGGAACGGAGTCGCTTTCCACTGTGTGCATAGGGGAGGAGAGTGGCACCATGCTCACCCTCTACCTTTCGGACCCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACGCTGGTTCAACTACATGACGGCTGTGTCCTTTGAGATCAACTGGCATTCATTCTTCTTGACTCGGCTAGGGGACTTCTGTGGAAGATTCTGCTGAAGCTGGAAGAAGTACCTACCCTGGAACAAACAACTAAGGCGATTCAGGAAGCAATTGATGCCCTGCGACCTTCGTGAGCTGGAATTGGTTAGCCTTCTCTTTAGGATCTGTTTTTTTTTTCTCCTTCCTGTTAGTGTGTTTTGCTGCTGCTCAGTCAGTTTGTTCTGAAAGGTTGTGATGTTGTGAGGGTTGATCCCTTTCACCCTTCTGCTTTTGTTTTCTGTGCCTATATGTCAAGCTGGCGACCCCAGCGCTATATAAGGATCAGTTTGCAAATACTTCATGCTTTCTATAAAATGCAGGGCCTCGCGTGGCCTTTCCTCTAAAAAAAAAAAA]
[-] EMBL C74279               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       cnTCTTAGACCAAGGCCANACCGTTGGCGGCGNGCGGCGGGCTCCTCCTNGTGNGCGTCCTCCCNTCGCCCTCGCCGGCGCCGCAGAACGCGCTCCACCTCTGCGTCTGCAACCTGCTCACCGGCAGCCACGACGTCCTGCCCCCTCTACCCATGGATTGCTTCGAGAAAGACGGCGCCA AGAGTACGCCATCCTCACAGCCGCCGACCACCGCGTCAGCCGCAACCCATCAGGTGGCTACAACACCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_5000#0 CCTCTACCTCTCCGCATCACCTCGGGCCGCCGCCGCCGCCGCTTCGTCGCCGGCCTCGCC CACTCGGAAATGGCGGAAATGGGCGCCGCCGCCGCCGCCGCGGTGCCGGTTATTCCGGAG GACGTCGTCATCGAGATCCTCGCGCGGGTGCCGGACCCGACGTCCCTCTTCCGCTGCGCC GCAGCGTGCAAGCGGTGGCTCCGCCTCATCGCCGACCAGGCCTTACTCCGCCGCCGCTGG CCGCCGGGCACCCGGGTGCCCTCCCTCCTCGGCTTCTTCGCGCAGCGCCACCAGATCCAG GCCAACGCGAGGCGGAAGCTCACCAAGCTCTTCCCGACCCGCGCGCCGCCGCTCGTCGCA GCGCCGAGCAGGGGCACAGGTGACCCACCCGTTAGCACCGGGCGGCGGCGGCGGCTGTTC CTCACCGACTTCGTCCGCAACGCCGCCGGCGCCGGCCTCTTCGACCAGGCCAAGCCGTTG GCGGCGCGCGGCGGGCTCCTCCTCGTGCGCGTCCTCCCCTCGCCCTCGCCGGCGCCGCAG AACGCGCTCCACCTCTGCGTCTGCAACCTGCTCACCGGCAGCCACGACGTCCTGCCCCCT CTACCCATGGATTGCTTCGAGAAAGACGGCGCCAGAGGCTACGCCATCCTCACAGCCGCC GACCACCGCGTCAGCCGCAACCCATCAGGTGGCTACAACACCTTCTTCCAGGTGCTCCTC CTCAGCATCCACCATGGCAACCATCAGGTATACCTCCACAGATTCTCCTCAGCCGCTGCC AGTGCCGCCGCGGCGGCGGTCATTTTTGAGATATCCTGGAGCACGCCCAGAAATTGCTCT GAACAAATCCGGGGCTATGTCTGGGGTCCCTCTGGAAACAGAGTTGCAGCTGTCAGCCAT GGCGGCGCACACTGGCTCTTCAGTTGGGGAGAAGAAAGCCTCTACACCCTTGATGTGAGC ATTGACACAGACAACATCGGCGCAACCAATATCCCAATTGATCCTCCCCCCACTGTCTTC CACCAATCTTGGTTGTACGTAAGCGTCGACGAGAGGCTTTCGCTTCTTTATCTTTGTGAC AACAAACTTCATATTTGGACCAAGCTAGAAACACAGGAGAGTGGTCGTTTGCTCTGGAAT TGCACCCAATCGATTTGTGTTGGCGTGAAGATGGGGTTGTTTGGAACGGAGTCGCTTTCC ACTGTGTGCATAGGGGAGGAGAGTGGCACCATGCTCACCCTCTACCTTTCGGACCCTAAC AGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACGC TGGTTCAACTACATGACGGCTGTGTCCTTTGAGATCAACTGGCATTCATTCTTCTTGACT CGGCTAGGGGACTTCTGTGGAAGATTCTGCTGAAGCTGGAAGAAGTACCTACCCTGGAAC AAACAACTAAGGCGATTCAGGAAGCAATTGATGCCCTGCGACCTTCGTGAGCTGGAATTG GTTAGCCTTCTCTTTAGGATCTGTTTTTTTTTTCTCCTTCCTGTTAGTGTGTTTTGCTGC TGCTCAGTCAGTTTGTTCTGAAAGGTTGTGATGTTGTGAGGGTTGATCCCTTTCACCCTT CTGCTTTTGTTTTCTGTGCCTATATGTCAAGCTGGCGACCCCAGCGCTATATAAGGATCA GTTTGCAAATACTTCATGCTTTCTATAAAATGCAGGGCCTCGCGTGGCCTTTCCTCTAAA AAAAAAAAA



consensusID : consensus_5000#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence
                              [CTAGAACCCAGGAGATGTCATTTTCGGATGCACCCACTCGATTGTGTTGGCTGAAATGGGGTTGTTTGGACCGGAGTCGCTTTCCCACTGTGGTGCATAAGGGGACGGAGAGTGGCACCATGGCTCACCCTGCTACCTTTCGGACCCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACCCTGGTTCAAACTACATGACGGCTGTGGTCCTCTTGAGATCAACTGCATTCATTCTTCTTGACTCGGCTAGGGGGACTTCTTGGTGGAAGATTCTGCTGAAGCTGGGAAGAAAGGTACCCTACCCCTGGAACACAACACAACTAAAGGCCGATTTCCAGGGAAACCACATTGGATGCCCTGCCGACCTTTGCCGTTGAAGGCCTGGGAAATTTG]

[-] EMBL BU667312             [CTAGAACCCAGGAGATGTCATTTTCGGATGCACCCACTCGATTGTGTTGGCTGAAATGGGGTTGTTTGGACCGGAGTCGCTTTCCCACTGTGGTGCATAAGGGGACGGAGAGTGGCACCATGGCTCACCCTGCTACCTTTCGGACCCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACCCTGGTTCAAACTACATGACGGCTGTGGTCCTCTTGAGATCAACTGCATTCATTCTTCTTGACTCGGCTAGGGGGACTTCTTGGTGGAAGATTCTGCTGAAGCTGGGAAGAAAGGTACCCTACCCCTGGAACACAACACAACTAAAGGCCGATTTCCAGGGAAACCACATTGGATGCCCTGCCGACCTTTGCCGTTGAAGGCCTGGGAAATTTG]


>consensus_5000#1 CTAGAACCCAGGAGATGTCATTTTCGGATGCACCCACTCGATTGTGTTGGCTGAAATGGG GTTGTTTGGACCGGAGTCGCTTTCCCACTGTGGTGCATAAGGGGACGGAGAGTGGCACCA TGGCTCACCCTGCTACCTTTCGGACCCTAACAGCGCATATGTGCTCGACCTCCCATCTGG GTCGATTACCAGTGTGGACGATTGGAAACCCTGGTTCAAACTACATGACGGCTGTGGTCC TCTTGAGATCAACTGCATTCATTCTTCTTGACTCGGCTAGGGGGACTTCTTGGTGGAAGA TTCTGCTGAAGCTGGGAAGAAAGGTACCCTACCCCTGGAACACAACACAACTAAAGGCCG ATTTCCAGGGAAACCACATTGGATGCCCTGCCGACCTTTGCCGTTGAAGGCCTGGGAAAT TTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5000#0      CCTCTACCTCTCCGCATCACCTCGGGCCGCCGCCGCCGCCGCTTCGTCGCCGGCCTCGCC 60
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      CACTCGGAAATGGCGGAAATGGGCGCCGCCGCCGCCGCCGCGGTGCCGGTTATTCCGGAG 120
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      GACGTCGTCATCGAGATCCTCGCGCGGGTGCCGGACCCGACGTCCCTCTTCCGCTGCGCC 180
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      GCAGCGTGCAAGCGGTGGCTCCGCCTCATCGCCGACCAGGCCTTACTCCGCCGCCGCTGG 240
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      CCGCCGGGCACCCGGGTGCCCTCCCTCCTCGGCTTCTTCGCGCAGCGCCACCAGATCCAG 300
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      GCCAACGCGAGGCGGAAGCTCACCAAGCTCTTCCCGACCCGCGCGCCGCCGCTCGTCGCA 360
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      GCGCCGAGCAGGGGCACAGGTGACCCACCCGTTAGCACCGGGCGGCGGCGGCGGCTGTTC 420
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      CTCACCGACTTCGTCCGCAACGCCGCCGGCGCCGGCCTCTTCGACCAGGCCAAGCCGTTG 480
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      GCGGCGCGCGGCGGGCTCCTCCTCGTGCGCGTCCTCCCCTCGCCCTCGCCGGCGCCGCAG 540
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      AACGCGCTCCACCTCTGCGTCTGCAACCTGCTCACCGGCAGCCACGACGTCCTGCCCCCT 600
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      CTACCCATGGATTGCTTCGAGAAAGACGGCGCCAGAGGCTACGCCATCCTCACAGCCGCC 660
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      GACCACCGCGTCAGCCGCAACCCATCAGGTGGCTACAACACCTTCTTCCAGGTGCTCCTC 720
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      CTCAGCATCCACCATGGCAACCATCAGGTATACCTCCACAGATTCTCCTCAGCCGCTGCC 780
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      AGTGCCGCCGCGGCGGCGGTCATTTTTGAGATATCCTGGAGCACGCCCAGAAATTGCTCT 840
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      GAACAAATCCGGGGCTATGTCTGGGGTCCCTCTGGAAACAGAGTTGCAGCTGTCAGCCAT 900
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      GGCGGCGCACACTGGCTCTTCAGTTGGGGAGAAGAAAGCCTCTACACCCTTGATGTGAGC 960
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      ATTGACACAGACAACATCGGCGCAACCAATATCCCAATTGATCCTCCCCCCACTGTCTTC 1020
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      CACCAATCTTGGTTGTACGTAAGCGTCGACGAGAGGCTTTCGCTTCTTTATCTTTGTGAC 1080
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      AACAAACTTCATATTTGGACCAAGCTAGAAACACAGGAGAGTGGTCGTTTGCTCTGGAAT 1140
consensus_5000#1      ------------------------CTAGAACC-CAGGAGA--TGTCATTTTC---GGA-- 28
                                              ****** * *******   *** *** *   ***  

consensus_5000#0      TGCACCCAATCGATTTGTGTTGGCGTGAAGATGGGGTTGTTTGGAACGGAGTCGCTTTCC 1200
consensus_5000#1      TGCACCCACTCGATT-GTGTTGGC-TGAA-ATGGGGTTGTTTGGACCGGAGTCGCTTTCC 85
                      ******** ****** ******** **** *************** **************

consensus_5000#0      -ACTGTG-TGCATAGGGGA--GGAGAGTGGCACCATG-CTCACCCT-CTACCTTTCGGAC 1254
consensus_5000#1      CACTGTGGTGCATAAGGGGACGGAGAGTGGCACCATGGCTCACCCTGCTACCTTTCGGAC 145
                       ****** ****** ***   **************** ******** *************

consensus_5000#0      CCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGG 1314
consensus_5000#1      CCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGG 205
                      ************************************************************

consensus_5000#0      AAACGCTGGTTCAA-CTACATGACGGCTGTG--TCCTTTGAGATCAACTGGCATTCATTC 1371
consensus_5000#1      AAACCCTGGTTCAAACTACATGACGGCTGTGGTCCTCTTGAGATCAACTG-CATTCATTC 264
                      **** ********* ****************   *  ************* *********

consensus_5000#0      TTCTTGACTCGGCTAGGGG-ACTTCT--GTGGAAGATTCTGCTGAAGCTGGAAGAA---G 1425
consensus_5000#1      TTCTTGACTCGGCTAGGGGGACTTCTTGGTGGAAGATTCTGCTGAAGCTGGGAAGAAAGG 324
                      ******************* ******  *********************** *  *   *

consensus_5000#0      TACCTA--CCCTGGAACAAA---CAACTAAGG--CGATT--CAGGAAG----CAATTGAT 1472
consensus_5000#1      TACCCTACCCCTGGAACACAACACAACTAAAGGCCGATTTCCAGGGAAACCACATTGGAT 384
                      ****    ********** *   ******* *  *****  **** *     ** * ***

consensus_5000#0      GCCCTGC-GACCTTCGTGAGCTGGAATTGGTTAGCCTTCTCTTTAGGATCTGTTTTTTTT 1531
consensus_5000#1      GCCCTGCCGACCTTTGCCGTTGAAGGCCTGGGAAATTTG--------------------- 423
                      ******* ****** *             *  *   **                      

consensus_5000#0      TTCTCCTTCCTGTTAGTGTGTTTTGCTGCTGCTCAGTCAGTTTGTTCTGAAAGGTTGTGA 1591
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      TGTTGTGAGGGTTGATCCCTTTCACCCTTCTGCTTTTGTTTTCTGTGCCTATATGTCAAG 1651
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      CTGGCGACCCCAGCGCTATATAAGGATCAGTTTGCAAATACTTCATGCTTTCTATAAAAT 1711
consensus_5000#1      ------------------------------------------------------------
                                                                                  

consensus_5000#0      GCAGGGCCTCGCGTGGCCTTTCCTCTAAAAAAAAAAAA 1749
consensus_5000#1      --------------------------------------
                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)