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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5000#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1749 fasta sequence
[CCTCTACCTCTCCGCATCACCTCGGGCCGCCGCCGCCGCCGCTTCGTCGCCGGCCTCGCCCACTCGGAAATGGCGGAAATGGGCGCCGCCGCCGCCGCCGCGGTGCCGGTTATTCCGGAGGACGTCGTCATCGAGATCCTCGCGCGGGTGCCGGACCCGACGTCCCTCTTCCGCTGCGCCGCAGCGTGCAAGCGGTGGCTCCGCCTCATCGCCGACCAGGCCTTACTCCGCCGCCGCTGGCCGCCGGGCACCCGGGTGCCCTCCCTCCTCGGCTTCTTCGCGCAGCGCCACCAGATCCAGGCCAACGCGAGGCGGAAGCTCACCAAGCTCTTCCCGACCCGCGCGCCGCCGCTCGTCGCAGCGCCGAGCAGGGGCACAGGTGACCCACCCGTTAGCACCGGGCGGCGGCGGCGGCTGTTCCTCACCGACTTCGTCCGCAACGCCGCCGGCGCCGGCCTCTTCGACC-AGGCCAAGCCGTTGGCGGCGCGCGGCGGGCTCCTCCTCGTGCGCGTCCTCCCCTCGCCCTCGCCGGCGCCGCAGAACGCGCTCCACCTCTGCGTCTGCAACCTGCTCACCGGCAGCCACGACGTCCTGCCCCCTCTACCCATGGATTGCTTCGAGAAAGACGGCGCCAGAGGCTACGCCATCCTCACAGCCGCCGACCACCGCGTCAGCCGCAACCCATCAGGTGGCTACAACACCTTCTTCCAGGTGCTCCTCCTCAGCATCCACCATGGCAACCATCAGGTATACCTCCACAGATTCTCCTCAGCCGCTGCCAGTGCCGCCGCGGCGGCGGTCATTTTTGAGATATCCTGGAGCACGCCCAGAAATTGCTCTGAACAAATCCGGGGCTATGTCTGGGGTCCCTCTGGAAACAGAGTTGCAGCTGTCAGCCATGGCGGCGCACACTGGCTCTTCAGTTGGGGAGAAGAAAGCCTCTACACCCTTGATGTGAGCATTGACACAGACAACATCGGCGCAACCAATATCCCAATTGATCCTCCCCCCACTGTCTTCCACCAATCTTGGTTGTACGTAAGCGTCGACGAGAGGCTTTCGCTTCTTTATCTTTGTGACAACAAACTTCATATTTGGACCAAGCTAGAAACACAGGAGAGTGGTCGTTTGCTCTGGAATTGCACCCAATCGATTTGTGTTGGCGTGAAGATGGGGTTGTTTGGAACGGAGTCGCTTTCCACTGTGTGCATAGGGGAGGAGAGTGGCACCATGCTCACCCTCTACCTTTCGGACCCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACGCTGGTTCAACTACATGACGGCTGTGTCCTTTGAGATCAACTGGCATTCATTCTTCTTGACTCGGCTAGGGGACTTCTGTGGAAGATTCTGCTGAAGCTGGAAGAAGTACCTACCCTGGAACAAACAACTAAGGCGATTCAGGAAGCAATTGATGCCCTGCGACCTTCGTGAGCTGGAATTGGTTAGCCTTCTCTTTAGGATCTGTTTTTTTTTTCTCCTTCCTGTTAGTGTGTTTTGCTGCTGCTCAGTCAGTTTGTTCTGAAAGGTTGTGATGTTGTGAGGGTTGATCCCTTTCACCCTTCTGCTTTTGTTTTCTGTGCCTATATGTCAAGCTGGCGACCCCAGCGCTATATAAGGATCAGTTTGCAAATACTTCATGCTTTCTATAAAATGCAGGGCCTCGCGTGGCCTTTCCTCTAAAAAAAAAAAA]
[+] EMBL AK106289 [CCTCTACCTCTCCGCATCACCTCGGGCCGCCGCCGCCGCCGCTTCGTCGCCGGCCTCGCCCACTCGGAAATGGCGGAAATGGGCGCCGCCGCCGCCGCCGCGGTGCCGGTTATTCCGGAGGACGTCGTCATCGAGATCCTCGCGCGGGTGCCGGACCCGACGTCCCTCTTCCGCTGCGCCGCAGCGTGCAAGCGGTGGCTCCGCCTCATCGCCGACCAGGCCTTACTCCGCCGCCGCTGGCCGCCGGGCACCCGGGTGCCCTCCCTCCTCGGCTTCTTCGCGCAGCGCCACCAGATCCAGGCCAACGCGAGGCGGAAGCTCACCAAGCTCTTCCCGACCCGCGCGCCGCCGCTCGTCGCAGCGCCGAGCAGGGGCACAGGTGACCCACCCGTTAGCACCGGGCGGCGGCGGCGGCTGTTCCTCACCGACTTCGTCCGCAACGCCGCCGGCGCCGGCCTCTTCGACC AGGCCAAGCCGTTGGCGGCGCGCGGCGGGCTCCTCCTCGTGCGCGTCCTCCCCTCGCCCTCGCCGGCGCCGCAGAACGCGCTCCACCTCTGCGTCTGCAACCTGCTCACCGGCAGCCACGACGTCCTGCCCCCTCTACCCATGGATTGCTTCGAGAAAGACGGCGCCAGAGGCTACGCCATCCTCACAGCCGCCGACCACCGCGTCAGCCGCAACCCATCAGGTGGCTACAACACCTTCTTCCAGGTGCTCCTCCTCAGCATCCACCATGGCAACCATCAGGTATACCTCCACAGATTCTCCTCAGCCGCTGCCAGTGCCGCCGCGGCGGCGGTCATTTTTGAGATATCCTGGAGCACGCCCAGAAATTGCTCTGAACAAATCCGGGGCTATGTCTGGGGTCCCTCTGGAAACAGAGTTGCAGCTGTCAGCCATGGCGGCGCACACTGGCTCTTCAGTTGGGGAGAAGAAAGCCTCTACACCCTTGATGTGAGCATTGACACAGACAACATCGGCGCAACCAATATCCCAATTGATCCTCCCCCCACTGTCTTCCACCAATCTTGGTTGTACGTAAGCGTCGACGAGAGGCTTTCGCTTCTTTATCTTTGTGACAACAAACTTCATATTTGGACCAAGCTAGAAACACAGGAGAGTGGTCGTTTGCTCTGGAATTGCACCCAATCGATTTGTGTTGGCGTGAAGATGGGGTTGTTTGGAACGGAGTCGCTTTCCACTGTGTGCATAGGGGAGGAGAGTGGCACCATGCTCACCCTCTACCTTTCGGACCCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACGCTGGTTCAACTACATGACGGCTGTGTCCTTTGAGATCAACTGGCATTCATTCTTCTTGACTCGGCTAGGGGACTTCTGTGGAAGATTCTGCTGAAGCTGGAAGAAGTACCTACCCTGGAACAAACAACTAAGGCGATTCAGGAAGCAATTGATGCCCTGCGACCTTCGTGAGCTGGAATTGGTTAGCCTTCTCTTTAGGATCTGTTTTTTTTTTCTCCTTCCTGTTAGTGTGTTTTGCTGCTGCTCAGTCAGTTTGTTCTGAAAGGTTGTGATGTTGTGAGGGTTGATCCCTTTCACCCTTCTGCTTTTGTTTTCTGTGCCTATATGTCAAGCTGGCGACCCCAGCGCTATATAAGGATCAGTTTGCAAATACTTCATGCTTTCTATAAAATGCAGGGCCTCGCGTGGCCTTTCCTCTAAAAAAAAAAAA]
[-] EMBL C74279 [ cnTCTTAGACCAAGGCCANACCGTTGGCGGCGNGCGGCGGGCTCCTCCTNGTGNGCGTCCTCCCNTCGCCCTCGCCGGCGCCGCAGAACGCGCTCCACCTCTGCGTCTGCAACCTGCTCACCGGCAGCCACGACGTCCTGCCCCCTCTACCCATGGATTGCTTCGAGAAAGACGGCGCCA AGAGTACGCCATCCTCACAGCCGCCGACCACCGCGTCAGCCGCAACCCATCAGGTGGCTACAACACCTT ]
consensusID : consensus_5000#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence
[CTAGAACCCAGGAGATGTCATTTTCGGATGCACCCACTCGATTGTGTTGGCTGAAATGGGGTTGTTTGGACCGGAGTCGCTTTCCCACTGTGGTGCATAAGGGGACGGAGAGTGGCACCATGGCTCACCCTGCTACCTTTCGGACCCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACCCTGGTTCAAACTACATGACGGCTGTGGTCCTCTTGAGATCAACTGCATTCATTCTTCTTGACTCGGCTAGGGGGACTTCTTGGTGGAAGATTCTGCTGAAGCTGGGAAGAAAGGTACCCTACCCCTGGAACACAACACAACTAAAGGCCGATTTCCAGGGAAACCACATTGGATGCCCTGCCGACCTTTGCCGTTGAAGGCCTGGGAAATTTG]
[-] EMBL BU667312 [CTAGAACCCAGGAGATGTCATTTTCGGATGCACCCACTCGATTGTGTTGGCTGAAATGGGGTTGTTTGGACCGGAGTCGCTTTCCCACTGTGGTGCATAAGGGGACGGAGAGTGGCACCATGGCTCACCCTGCTACCTTTCGGACCCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACCCTGGTTCAAACTACATGACGGCTGTGGTCCTCTTGAGATCAACTGCATTCATTCTTCTTGACTCGGCTAGGGGGACTTCTTGGTGGAAGATTCTGCTGAAGCTGGGAAGAAAGGTACCCTACCCCTGGAACACAACACAACTAAAGGCCGATTTCCAGGGAAACCACATTGGATGCCCTGCCGACCTTTGCCGTTGAAGGCCTGGGAAATTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5000#0 CCTCTACCTCTCCGCATCACCTCGGGCCGCCGCCGCCGCCGCTTCGTCGCCGGCCTCGCC 60
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 CACTCGGAAATGGCGGAAATGGGCGCCGCCGCCGCCGCCGCGGTGCCGGTTATTCCGGAG 120
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 GACGTCGTCATCGAGATCCTCGCGCGGGTGCCGGACCCGACGTCCCTCTTCCGCTGCGCC 180
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 GCAGCGTGCAAGCGGTGGCTCCGCCTCATCGCCGACCAGGCCTTACTCCGCCGCCGCTGG 240
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 CCGCCGGGCACCCGGGTGCCCTCCCTCCTCGGCTTCTTCGCGCAGCGCCACCAGATCCAG 300
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 GCCAACGCGAGGCGGAAGCTCACCAAGCTCTTCCCGACCCGCGCGCCGCCGCTCGTCGCA 360
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 GCGCCGAGCAGGGGCACAGGTGACCCACCCGTTAGCACCGGGCGGCGGCGGCGGCTGTTC 420
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 CTCACCGACTTCGTCCGCAACGCCGCCGGCGCCGGCCTCTTCGACCAGGCCAAGCCGTTG 480
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 GCGGCGCGCGGCGGGCTCCTCCTCGTGCGCGTCCTCCCCTCGCCCTCGCCGGCGCCGCAG 540
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 AACGCGCTCCACCTCTGCGTCTGCAACCTGCTCACCGGCAGCCACGACGTCCTGCCCCCT 600
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 CTACCCATGGATTGCTTCGAGAAAGACGGCGCCAGAGGCTACGCCATCCTCACAGCCGCC 660
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 GACCACCGCGTCAGCCGCAACCCATCAGGTGGCTACAACACCTTCTTCCAGGTGCTCCTC 720
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 CTCAGCATCCACCATGGCAACCATCAGGTATACCTCCACAGATTCTCCTCAGCCGCTGCC 780
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 AGTGCCGCCGCGGCGGCGGTCATTTTTGAGATATCCTGGAGCACGCCCAGAAATTGCTCT 840
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 GAACAAATCCGGGGCTATGTCTGGGGTCCCTCTGGAAACAGAGTTGCAGCTGTCAGCCAT 900
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 GGCGGCGCACACTGGCTCTTCAGTTGGGGAGAAGAAAGCCTCTACACCCTTGATGTGAGC 960
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 ATTGACACAGACAACATCGGCGCAACCAATATCCCAATTGATCCTCCCCCCACTGTCTTC 1020
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 CACCAATCTTGGTTGTACGTAAGCGTCGACGAGAGGCTTTCGCTTCTTTATCTTTGTGAC 1080
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 AACAAACTTCATATTTGGACCAAGCTAGAAACACAGGAGAGTGGTCGTTTGCTCTGGAAT 1140
consensus_5000#1 ------------------------CTAGAACC-CAGGAGA--TGTCATTTTC---GGA-- 28
****** * ******* *** *** * ***
consensus_5000#0 TGCACCCAATCGATTTGTGTTGGCGTGAAGATGGGGTTGTTTGGAACGGAGTCGCTTTCC 1200
consensus_5000#1 TGCACCCACTCGATT-GTGTTGGC-TGAA-ATGGGGTTGTTTGGACCGGAGTCGCTTTCC 85
******** ****** ******** **** *************** **************
consensus_5000#0 -ACTGTG-TGCATAGGGGA--GGAGAGTGGCACCATG-CTCACCCT-CTACCTTTCGGAC 1254
consensus_5000#1 CACTGTGGTGCATAAGGGGACGGAGAGTGGCACCATGGCTCACCCTGCTACCTTTCGGAC 145
****** ****** *** **************** ******** *************
consensus_5000#0 CCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGG 1314
consensus_5000#1 CCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGG 205
************************************************************
consensus_5000#0 AAACGCTGGTTCAA-CTACATGACGGCTGTG--TCCTTTGAGATCAACTGGCATTCATTC 1371
consensus_5000#1 AAACCCTGGTTCAAACTACATGACGGCTGTGGTCCTCTTGAGATCAACTG-CATTCATTC 264
**** ********* **************** * ************* *********
consensus_5000#0 TTCTTGACTCGGCTAGGGG-ACTTCT--GTGGAAGATTCTGCTGAAGCTGGAAGAA---G 1425
consensus_5000#1 TTCTTGACTCGGCTAGGGGGACTTCTTGGTGGAAGATTCTGCTGAAGCTGGGAAGAAAGG 324
******************* ****** *********************** * * *
consensus_5000#0 TACCTA--CCCTGGAACAAA---CAACTAAGG--CGATT--CAGGAAG----CAATTGAT 1472
consensus_5000#1 TACCCTACCCCTGGAACACAACACAACTAAAGGCCGATTTCCAGGGAAACCACATTGGAT 384
**** ********** * ******* * ***** **** * ** * ***
consensus_5000#0 GCCCTGC-GACCTTCGTGAGCTGGAATTGGTTAGCCTTCTCTTTAGGATCTGTTTTTTTT 1531
consensus_5000#1 GCCCTGCCGACCTTTGCCGTTGAAGGCCTGGGAAATTTG--------------------- 423
******* ****** * * * **
consensus_5000#0 TTCTCCTTCCTGTTAGTGTGTTTTGCTGCTGCTCAGTCAGTTTGTTCTGAAAGGTTGTGA 1591
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 TGTTGTGAGGGTTGATCCCTTTCACCCTTCTGCTTTTGTTTTCTGTGCCTATATGTCAAG 1651
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 CTGGCGACCCCAGCGCTATATAAGGATCAGTTTGCAAATACTTCATGCTTTCTATAAAAT 1711
consensus_5000#1 ------------------------------------------------------------
consensus_5000#0 GCAGGGCCTCGCGTGGCCTTTCCTCTAAAAAAAAAAAA 1749
consensus_5000#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||