These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5000#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1749 fasta sequence [CCTCTACCTCTCCGCATCACCTCGGGCCGCCGCCGCCGCCGCTTCGTCGCCGGCCTCGCCCACTCGGAAATGGCGGAAATGGGCGCCGCCGCCGCCGCCGCGGTGCCGGTTATTCCGGAGGACGTCGTCATCGAGATCCTCGCGCGGGTGCCGGACCCGACGTCCCTCTTCCGCTGCGCCGCAGCGTGCAAGCGGTGGCTCCGCCTCATCGCCGACCAGGCCTTACTCCGCCGCCGCTGGCCGCCGGGCACCCGGGTGCCCTCCCTCCTCGGCTTCTTCGCGCAGCGCCACCAGATCCAGGCCAACGCGAGGCGGAAGCTCACCAAGCTCTTCCCGACCCGCGCGCCGCCGCTCGTCGCAGCGCCGAGCAGGGGCACAGGTGACCCACCCGTTAGCACCGGGCGGCGGCGGCGGCTGTTCCTCACCGACTTCGTCCGCAACGCCGCCGGCGCCGGCCTCTTCGACC-AGGCCAAGCCGTTGGCGGCGCGCGGCGGGCTCCTCCTCGTGCGCGTCCTCCCCTCGCCCTCGCCGGCGCCGCAGAACGCGCTCCACCTCTGCGTCTGCAACCTGCTCACCGGCAGCCACGACGTCCTGCCCCCTCTACCCATGGATTGCTTCGAGAAAGACGGCGCCAGAGGCTACGCCATCCTCACAGCCGCCGACCACCGCGTCAGCCGCAACCCATCAGGTGGCTACAACACCTTCTTCCAGGTGCTCCTCCTCAGCATCCACCATGGCAACCATCAGGTATACCTCCACAGATTCTCCTCAGCCGCTGCCAGTGCCGCCGCGGCGGCGGTCATTTTTGAGATATCCTGGAGCACGCCCAGAAATTGCTCTGAACAAATCCGGGGCTATGTCTGGGGTCCCTCTGGAAACAGAGTTGCAGCTGTCAGCCATGGCGGCGCACACTGGCTCTTCAGTTGGGGAGAAGAAAGCCTCTACACCCTTGATGTGAGCATTGACACAGACAACATCGGCGCAACCAATATCCCAATTGATCCTCCCCCCACTGTCTTCCACCAATCTTGGTTGTACGTAAGCGTCGACGAGAGGCTTTCGCTTCTTTATCTTTGTGACAACAAACTTCATATTTGGACCAAGCTAGAAACACAGGAGAGTGGTCGTTTGCTCTGGAATTGCACCCAATCGATTTGTGTTGGCGTGAAGATGGGGTTGTTTGGAACGGAGTCGCTTTCCACTGTGTGCATAGGGGAGGAGAGTGGCACCATGCTCACCCTCTACCTTTCGGACCCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACGCTGGTTCAACTACATGACGGCTGTGTCCTTTGAGATCAACTGGCATTCATTCTTCTTGACTCGGCTAGGGGACTTCTGTGGAAGATTCTGCTGAAGCTGGAAGAAGTACCTACCCTGGAACAAACAACTAAGGCGATTCAGGAAGCAATTGATGCCCTGCGACCTTCGTGAGCTGGAATTGGTTAGCCTTCTCTTTAGGATCTGTTTTTTTTTTCTCCTTCCTGTTAGTGTGTTTTGCTGCTGCTCAGTCAGTTTGTTCTGAAAGGTTGTGATGTTGTGAGGGTTGATCCCTTTCACCCTTCTGCTTTTGTTTTCTGTGCCTATATGTCAAGCTGGCGACCCCAGCGCTATATAAGGATCAGTTTGCAAATACTTCATGCTTTCTATAAAATGCAGGGCCTCGCGTGGCCTTTCCTCTAAAAAAAAAAAA] [+] EMBL AK106289 [CCTCTACCTCTCCGCATCACCTCGGGCCGCCGCCGCCGCCGCTTCGTCGCCGGCCTCGCCCACTCGGAAATGGCGGAAATGGGCGCCGCCGCCGCCGCCGCGGTGCCGGTTATTCCGGAGGACGTCGTCATCGAGATCCTCGCGCGGGTGCCGGACCCGACGTCCCTCTTCCGCTGCGCCGCAGCGTGCAAGCGGTGGCTCCGCCTCATCGCCGACCAGGCCTTACTCCGCCGCCGCTGGCCGCCGGGCACCCGGGTGCCCTCCCTCCTCGGCTTCTTCGCGCAGCGCCACCAGATCCAGGCCAACGCGAGGCGGAAGCTCACCAAGCTCTTCCCGACCCGCGCGCCGCCGCTCGTCGCAGCGCCGAGCAGGGGCACAGGTGACCCACCCGTTAGCACCGGGCGGCGGCGGCGGCTGTTCCTCACCGACTTCGTCCGCAACGCCGCCGGCGCCGGCCTCTTCGACC AGGCCAAGCCGTTGGCGGCGCGCGGCGGGCTCCTCCTCGTGCGCGTCCTCCCCTCGCCCTCGCCGGCGCCGCAGAACGCGCTCCACCTCTGCGTCTGCAACCTGCTCACCGGCAGCCACGACGTCCTGCCCCCTCTACCCATGGATTGCTTCGAGAAAGACGGCGCCAGAGGCTACGCCATCCTCACAGCCGCCGACCACCGCGTCAGCCGCAACCCATCAGGTGGCTACAACACCTTCTTCCAGGTGCTCCTCCTCAGCATCCACCATGGCAACCATCAGGTATACCTCCACAGATTCTCCTCAGCCGCTGCCAGTGCCGCCGCGGCGGCGGTCATTTTTGAGATATCCTGGAGCACGCCCAGAAATTGCTCTGAACAAATCCGGGGCTATGTCTGGGGTCCCTCTGGAAACAGAGTTGCAGCTGTCAGCCATGGCGGCGCACACTGGCTCTTCAGTTGGGGAGAAGAAAGCCTCTACACCCTTGATGTGAGCATTGACACAGACAACATCGGCGCAACCAATATCCCAATTGATCCTCCCCCCACTGTCTTCCACCAATCTTGGTTGTACGTAAGCGTCGACGAGAGGCTTTCGCTTCTTTATCTTTGTGACAACAAACTTCATATTTGGACCAAGCTAGAAACACAGGAGAGTGGTCGTTTGCTCTGGAATTGCACCCAATCGATTTGTGTTGGCGTGAAGATGGGGTTGTTTGGAACGGAGTCGCTTTCCACTGTGTGCATAGGGGAGGAGAGTGGCACCATGCTCACCCTCTACCTTTCGGACCCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACGCTGGTTCAACTACATGACGGCTGTGTCCTTTGAGATCAACTGGCATTCATTCTTCTTGACTCGGCTAGGGGACTTCTGTGGAAGATTCTGCTGAAGCTGGAAGAAGTACCTACCCTGGAACAAACAACTAAGGCGATTCAGGAAGCAATTGATGCCCTGCGACCTTCGTGAGCTGGAATTGGTTAGCCTTCTCTTTAGGATCTGTTTTTTTTTTCTCCTTCCTGTTAGTGTGTTTTGCTGCTGCTCAGTCAGTTTGTTCTGAAAGGTTGTGATGTTGTGAGGGTTGATCCCTTTCACCCTTCTGCTTTTGTTTTCTGTGCCTATATGTCAAGCTGGCGACCCCAGCGCTATATAAGGATCAGTTTGCAAATACTTCATGCTTTCTATAAAATGCAGGGCCTCGCGTGGCCTTTCCTCTAAAAAAAAAAAA] [-] EMBL C74279 [ cnTCTTAGACCAAGGCCANACCGTTGGCGGCGNGCGGCGGGCTCCTCCTNGTGNGCGTCCTCCCNTCGCCCTCGCCGGCGCCGCAGAACGCGCTCCACCTCTGCGTCTGCAACCTGCTCACCGGCAGCCACGACGTCCTGCCCCCTCTACCCATGGATTGCTTCGAGAAAGACGGCGCCA AGAGTACGCCATCCTCACAGCCGCCGACCACCGCGTCAGCCGCAACCCATCAGGTGGCTACAACACCTT ] consensusID : consensus_5000#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [CTAGAACCCAGGAGATGTCATTTTCGGATGCACCCACTCGATTGTGTTGGCTGAAATGGGGTTGTTTGGACCGGAGTCGCTTTCCCACTGTGGTGCATAAGGGGACGGAGAGTGGCACCATGGCTCACCCTGCTACCTTTCGGACCCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACCCTGGTTCAAACTACATGACGGCTGTGGTCCTCTTGAGATCAACTGCATTCATTCTTCTTGACTCGGCTAGGGGGACTTCTTGGTGGAAGATTCTGCTGAAGCTGGGAAGAAAGGTACCCTACCCCTGGAACACAACACAACTAAAGGCCGATTTCCAGGGAAACCACATTGGATGCCCTGCCGACCTTTGCCGTTGAAGGCCTGGGAAATTTG] [-] EMBL BU667312 [CTAGAACCCAGGAGATGTCATTTTCGGATGCACCCACTCGATTGTGTTGGCTGAAATGGGGTTGTTTGGACCGGAGTCGCTTTCCCACTGTGGTGCATAAGGGGACGGAGAGTGGCACCATGGCTCACCCTGCTACCTTTCGGACCCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGGAAACCCTGGTTCAAACTACATGACGGCTGTGGTCCTCTTGAGATCAACTGCATTCATTCTTCTTGACTCGGCTAGGGGGACTTCTTGGTGGAAGATTCTGCTGAAGCTGGGAAGAAAGGTACCCTACCCCTGGAACACAACACAACTAAAGGCCGATTTCCAGGGAAACCACATTGGATGCCCTGCCGACCTTTGCCGTTGAAGGCCTGGGAAATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5000#0 CCTCTACCTCTCCGCATCACCTCGGGCCGCCGCCGCCGCCGCTTCGTCGCCGGCCTCGCC 60 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 CACTCGGAAATGGCGGAAATGGGCGCCGCCGCCGCCGCCGCGGTGCCGGTTATTCCGGAG 120 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 GACGTCGTCATCGAGATCCTCGCGCGGGTGCCGGACCCGACGTCCCTCTTCCGCTGCGCC 180 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 GCAGCGTGCAAGCGGTGGCTCCGCCTCATCGCCGACCAGGCCTTACTCCGCCGCCGCTGG 240 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 CCGCCGGGCACCCGGGTGCCCTCCCTCCTCGGCTTCTTCGCGCAGCGCCACCAGATCCAG 300 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 GCCAACGCGAGGCGGAAGCTCACCAAGCTCTTCCCGACCCGCGCGCCGCCGCTCGTCGCA 360 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 GCGCCGAGCAGGGGCACAGGTGACCCACCCGTTAGCACCGGGCGGCGGCGGCGGCTGTTC 420 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 CTCACCGACTTCGTCCGCAACGCCGCCGGCGCCGGCCTCTTCGACCAGGCCAAGCCGTTG 480 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 GCGGCGCGCGGCGGGCTCCTCCTCGTGCGCGTCCTCCCCTCGCCCTCGCCGGCGCCGCAG 540 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 AACGCGCTCCACCTCTGCGTCTGCAACCTGCTCACCGGCAGCCACGACGTCCTGCCCCCT 600 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 CTACCCATGGATTGCTTCGAGAAAGACGGCGCCAGAGGCTACGCCATCCTCACAGCCGCC 660 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 GACCACCGCGTCAGCCGCAACCCATCAGGTGGCTACAACACCTTCTTCCAGGTGCTCCTC 720 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 CTCAGCATCCACCATGGCAACCATCAGGTATACCTCCACAGATTCTCCTCAGCCGCTGCC 780 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 AGTGCCGCCGCGGCGGCGGTCATTTTTGAGATATCCTGGAGCACGCCCAGAAATTGCTCT 840 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 GAACAAATCCGGGGCTATGTCTGGGGTCCCTCTGGAAACAGAGTTGCAGCTGTCAGCCAT 900 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 GGCGGCGCACACTGGCTCTTCAGTTGGGGAGAAGAAAGCCTCTACACCCTTGATGTGAGC 960 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 ATTGACACAGACAACATCGGCGCAACCAATATCCCAATTGATCCTCCCCCCACTGTCTTC 1020 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 CACCAATCTTGGTTGTACGTAAGCGTCGACGAGAGGCTTTCGCTTCTTTATCTTTGTGAC 1080 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 AACAAACTTCATATTTGGACCAAGCTAGAAACACAGGAGAGTGGTCGTTTGCTCTGGAAT 1140 consensus_5000#1 ------------------------CTAGAACC-CAGGAGA--TGTCATTTTC---GGA-- 28 ****** * ******* *** *** * *** consensus_5000#0 TGCACCCAATCGATTTGTGTTGGCGTGAAGATGGGGTTGTTTGGAACGGAGTCGCTTTCC 1200 consensus_5000#1 TGCACCCACTCGATT-GTGTTGGC-TGAA-ATGGGGTTGTTTGGACCGGAGTCGCTTTCC 85 ******** ****** ******** **** *************** ************** consensus_5000#0 -ACTGTG-TGCATAGGGGA--GGAGAGTGGCACCATG-CTCACCCT-CTACCTTTCGGAC 1254 consensus_5000#1 CACTGTGGTGCATAAGGGGACGGAGAGTGGCACCATGGCTCACCCTGCTACCTTTCGGAC 145 ****** ****** *** **************** ******** ************* consensus_5000#0 CCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGG 1314 consensus_5000#1 CCTAACAGCGCATATGTGCTCGACCTCCCATCTGGGTCGATTACCAGTGTGGACGATTGG 205 ************************************************************ consensus_5000#0 AAACGCTGGTTCAA-CTACATGACGGCTGTG--TCCTTTGAGATCAACTGGCATTCATTC 1371 consensus_5000#1 AAACCCTGGTTCAAACTACATGACGGCTGTGGTCCTCTTGAGATCAACTG-CATTCATTC 264 **** ********* **************** * ************* ********* consensus_5000#0 TTCTTGACTCGGCTAGGGG-ACTTCT--GTGGAAGATTCTGCTGAAGCTGGAAGAA---G 1425 consensus_5000#1 TTCTTGACTCGGCTAGGGGGACTTCTTGGTGGAAGATTCTGCTGAAGCTGGGAAGAAAGG 324 ******************* ****** *********************** * * * consensus_5000#0 TACCTA--CCCTGGAACAAA---CAACTAAGG--CGATT--CAGGAAG----CAATTGAT 1472 consensus_5000#1 TACCCTACCCCTGGAACACAACACAACTAAAGGCCGATTTCCAGGGAAACCACATTGGAT 384 **** ********** * ******* * ***** **** * ** * *** consensus_5000#0 GCCCTGC-GACCTTCGTGAGCTGGAATTGGTTAGCCTTCTCTTTAGGATCTGTTTTTTTT 1531 consensus_5000#1 GCCCTGCCGACCTTTGCCGTTGAAGGCCTGGGAAATTTG--------------------- 423 ******* ****** * * * ** consensus_5000#0 TTCTCCTTCCTGTTAGTGTGTTTTGCTGCTGCTCAGTCAGTTTGTTCTGAAAGGTTGTGA 1591 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 TGTTGTGAGGGTTGATCCCTTTCACCCTTCTGCTTTTGTTTTCTGTGCCTATATGTCAAG 1651 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 CTGGCGACCCCAGCGCTATATAAGGATCAGTTTGCAAATACTTCATGCTTTCTATAAAAT 1711 consensus_5000#1 ------------------------------------------------------------ consensus_5000#0 GCAGGGCCTCGCGTGGCCTTTCCTCTAAAAAAAAAAAA 1749 consensus_5000#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||