cluster # 5010

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Oryza sativa
cluster # 5010 cluster # 5010 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5010#0 length = 1494 sequences # 1

consensus_5010#1 length = 287 sequences # 2

consensusID : consensus_5010#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1494
fasta sequence

                              [TGTCTGAGAAGCCGAGCTGAAGAATCAGAGGGGCTCTGAAGATTCTGACAGCTAGGTTTGAATCAAGATGCATCTCACCGGCCGAATTGATTGCTGTTGATCAAACGCCTTCTTCTCTGACGAAATTTCTGATCGATGCTTTGGTAGTCGGAGAAGTTCTGCGGCGGCGATGCAGTCGGAGGAGGTGAAAATGCGGTTCGGCCGGTGTCCGTACTGCCGCGCCATGATCTACCAGAACCCCAAGGCCGTCATCTTCTACTGCAGCAGATGCCGCACTCCGATCCGAGGCAAGAACCCGGAGCCGACGGATGAGGCGGAGTACGCGCTGAGCAGGCTGGAGATCCTCTCCGCCGACACCGCGTCGGTGTTCTCCGACGAGCCGGAGGACGCCGGGTCGGACCGGCGCGCCGACGAGGTCCGGCCGTTGTCGAGGCGGACGAGGCGGCCGTCGAGCTCGTCTGACTGGACGACGACGACGGATTCGGAGCGGAGCGAGGAGGCGTTCTACACGCCAAGGAACGCGCAGGAGGGGCGGCCATGGCAGTCGCCGTCGCCGGTGAGCTCGCAGGAGCTCGGGGCGTCCGGTGGTGGTGGTGGCTTGCCTCGACCTCCCGATGAGCCAGGCGCCGTCGCGGCGGCGCGCCTGATGGACCCGGCGTTTCACAAGGAGCTCCTCCACGCGCTGGACAACCTCCGCAGCTTGATCGTCACCATCGAGCAGCCGCGCCCGGCGAGCGGCGGCGGCGGGAGGGCCCTGACGCGGCGCGATTCGCGGCTCTTCCGCCGGCTGGAGTCGCAGCTGGAGCGGGCGCTTCCGCCGCAGGACACCGCTTCCACGTCGGCGTCGTCATCCAGCTGCCGCGGCGACGGCGGCGGCGGGCGTCCGTCGGCGCCCGCGCGGCGGGAGGGCACCGACCCCTGCCGCCCGGTCCTGGGCGGCGCGCCATTCGTGATCTGCGGCAAGTGCTCGGAGCTTCTGCGGACGCCGCCGCCGCCGCGGCCACGGAGGAGGAGGTGGACCACCAGGATACGGTGCGGCGAGTGCAACGAAGTGCTCGAGCTGTCCCTTCCCGCCGGCGGCGTCCCGGCTCAGCACCGGCCGATCAGGACGTGCTCGGCGCCGCTGGTCTCCGACCACCACCGGCCACTGCCACGACGGCTGGAGTGAGGCGAAGAGCGCGCACGGTGGCCATGATCGATTTGTTGATGGAGGGCTCACTGCTGAGCTGAAAGGGGGAAAACCTCACGCTAAGATGGATGGATGGGATTGAGGTTCTCCGCCATCGAATGCACGTTGCCTTTGTCATTAACATGTGGGCTCAGGAATCATCGGGCTCACATGTTAGTGACAAAGTCACATGACTTCGACCTCGAAGGATGCTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGATTTTTTTTCTTTTTGTTATTATTAGTCGCTAACCCAGACGTTACAAATGCTACGAAATTGGCTA]

[+] EMBL AK109153             [TGTCTGAGAAGCCGAGCTGAAGAATCAGAGGGGCTCTGAAGATTCTGACAGCTAGGTTTGAATCAAGATGCATCTCACCGGCCGAATTGATTGCTGTTGATCAAACGCCTTCTTCTCTGACGAAATTTCTGATCGATGCTTTGGTAGTCGGAGAAGTTCTGCGGCGGCGATGCAGTCGGAGGAGGTGAAAATGCGGTTCGGCCGGTGTCCGTACTGCCGCGCCATGATCTACCAGAACCCCAAGGCCGTCATCTTCTACTGCAGCAGATGCCGCACTCCGATCCGAGGCAAGAACCCGGAGCCGACGGATGAGGCGGAGTACGCGCTGAGCAGGCTGGAGATCCTCTCCGCCGACACCGCGTCGGTGTTCTCCGACGAGCCGGAGGACGCCGGGTCGGACCGGCGCGCCGACGAGGTCCGGCCGTTGTCGAGGCGGACGAGGCGGCCGTCGAGCTCGTCTGACTGGACGACGACGACGGATTCGGAGCGGAGCGAGGAGGCGTTCTACACGCCAAGGAACGCGCAGGAGGGGCGGCCATGGCAGTCGCCGTCGCCGGTGAGCTCGCAGGAGCTCGGGGCGTCCGGTGGTGGTGGTGGCTTGCCTCGACCTCCCGATGAGCCAGGCGCCGTCGCGGCGGCGCGCCTGATGGACCCGGCGTTTCACAAGGAGCTCCTCCACGCGCTGGACAACCTCCGCAGCTTGATCGTCACCATCGAGCAGCCGCGCCCGGCGAGCGGCGGCGGCGGGAGGGCCCTGACGCGGCGCGATTCGCGGCTCTTCCGCCGGCTGGAGTCGCAGCTGGAGCGGGCGCTTCCGCCGCAGGACACCGCTTCCACGTCGGCGTCGTCATCCAGCTGCCGCGGCGACGGCGGCGGCGGGCGTCCGTCGGCGCCCGCGCGGCGGGAGGGCACCGACCCCTGCCGCCCGGTCCTGGGCGGCGCGCCATTCGTGATCTGCGGCAAGTGCTCGGAGCTTCTGCGGACGCCGCCGCCGCCGCGGCCACGGAGGAGGAGGTGGACCACCAGGATACGGTGCGGCGAGTGCAACGAAGTGCTCGAGCTGTCCCTTCCCGCCGGCGGCGTCCCGGCTCAGCACCGGCCGATCAGGACGTGCTCGGCGCCGCTGGTCTCCGACCACCACCGGCCACTGCCACGACGGCTGGAGTGAGGCGAAGAGCGCGCACGGTGGCCATGATCGATTTGTTGATGGAGGGCTCACTGCTGAGCTGAAAGGGGGAAAACCTCACGCTAAGATGGATGGATGGGATTGAGGTTCTCCGCCATCGAATGCACGTTGCCTTTGTCATTAACATGTGGGCTCAGGAATCATCGGGCTCACATGTTAGTGACAAAGTCACATGACTTCGACCTCGAAGGATGCTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGATTTTTTTTCTTTTTGTTATTATTAGTCGCTAACCCAGACGTTACAAATGCTACGAAATTGGCTA]




>consensus_5010#0
TGTCTGAGAAGCCGAGCTGAAGAATCAGAGGGGCTCTGAAGATTCTGACAGCTAGGTTTG
AATCAAGATGCATCTCACCGGCCGAATTGATTGCTGTTGATCAAACGCCTTCTTCTCTGA
CGAAATTTCTGATCGATGCTTTGGTAGTCGGAGAAGTTCTGCGGCGGCGATGCAGTCGGA
GGAGGTGAAAATGCGGTTCGGCCGGTGTCCGTACTGCCGCGCCATGATCTACCAGAACCC
CAAGGCCGTCATCTTCTACTGCAGCAGATGCCGCACTCCGATCCGAGGCAAGAACCCGGA
GCCGACGGATGAGGCGGAGTACGCGCTGAGCAGGCTGGAGATCCTCTCCGCCGACACCGC
GTCGGTGTTCTCCGACGAGCCGGAGGACGCCGGGTCGGACCGGCGCGCCGACGAGGTCCG
GCCGTTGTCGAGGCGGACGAGGCGGCCGTCGAGCTCGTCTGACTGGACGACGACGACGGA
TTCGGAGCGGAGCGAGGAGGCGTTCTACACGCCAAGGAACGCGCAGGAGGGGCGGCCATG
GCAGTCGCCGTCGCCGGTGAGCTCGCAGGAGCTCGGGGCGTCCGGTGGTGGTGGTGGCTT
GCCTCGACCTCCCGATGAGCCAGGCGCCGTCGCGGCGGCGCGCCTGATGGACCCGGCGTT
TCACAAGGAGCTCCTCCACGCGCTGGACAACCTCCGCAGCTTGATCGTCACCATCGAGCA
GCCGCGCCCGGCGAGCGGCGGCGGCGGGAGGGCCCTGACGCGGCGCGATTCGCGGCTCTT
CCGCCGGCTGGAGTCGCAGCTGGAGCGGGCGCTTCCGCCGCAGGACACCGCTTCCACGTC
GGCGTCGTCATCCAGCTGCCGCGGCGACGGCGGCGGCGGGCGTCCGTCGGCGCCCGCGCG
GCGGGAGGGCACCGACCCCTGCCGCCCGGTCCTGGGCGGCGCGCCATTCGTGATCTGCGG
CAAGTGCTCGGAGCTTCTGCGGACGCCGCCGCCGCCGCGGCCACGGAGGAGGAGGTGGAC
CACCAGGATACGGTGCGGCGAGTGCAACGAAGTGCTCGAGCTGTCCCTTCCCGCCGGCGG
CGTCCCGGCTCAGCACCGGCCGATCAGGACGTGCTCGGCGCCGCTGGTCTCCGACCACCA
CCGGCCACTGCCACGACGGCTGGAGTGAGGCGAAGAGCGCGCACGGTGGCCATGATCGAT
TTGTTGATGGAGGGCTCACTGCTGAGCTGAAAGGGGGAAAACCTCACGCTAAGATGGATG
GATGGGATTGAGGTTCTCCGCCATCGAATGCACGTTGCCTTTGTCATTAACATGTGGGCT
CAGGAATCATCGGGCTCACATGTTAGTGACAAAGTCACATGACTTCGACCTCGAAGGATG
CTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGATTTTTTTTCT
TTTTGTTATTATTAGTCGCTAACCCAGACGTTACAAATGCTACGAAATTGGCTA

consensusID : consensus_5010#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 287
fasta sequence

                              [CNTGANCGATTTGTTGATGGAGGGCNNACTGCTGANCTGAAAGGGGGAAAACCTCACNCTNANATGGATGGATGGGATTGAGGTTCCCCGCCATCGAATGCNCGTTGCCTTTGTCATTAACATNTGGGCTCAGGAATCATCGGGCTCACATNTTAGTGACAAANTCACATGACTTCGACCNCGAAGGATGNTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGATTTTTTTTCTTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU197404             [CNTGANCGATTTGTTGATGGAGGGCNNACTGCTGANCTGAAAGGGGGAAAACCTCACNCTNANATGGATGGATGGGATTGAGGTTCCCCGCCATCGAATGCNCGTTGCCTTTGTCATTAACATNTGGGCTCAGGAATCATCGGGCTCACATNTTAGTGACAAANTCACATGACTTCGACCNCGAAGGATGNTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGATTTTTTTTCTTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU197403             [        ATTTGTTGATGGAGGGCTCACTGNTGAGCTGAAAGGGGGAAAACCTCACGCTAANATGGATGGATGGGATTGAGGTTCNCCNCCATCGAATGCNCGTTGCCTTTGTCATTAACATGTGGGCTCAGGAATCANCGGGCTCACATGTTAGTGACAAAGTCACATGACTTCGACCNCGAAGGATGCTGANCTGGATTGTTGATGGAAGTTTTGAANAGTTGTTTTTGAANAATGATTTTTTTTCTTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5010#1
CNTGANCGATTTGTTGATGGAGGGCNNACTGCTGANCTGAAAGGGGGAAAACCTCACNCT
NANATGGATGGATGGGATTGAGGTTCCCCGCCATCGAATGCNCGTTGCCTTTGTCATTAA
CATNTGGGCTCAGGAATCATCGGGCTCACATNTTAGTGACAAANTCACATGACTTCGACC
NCGAAGGATGNTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGA
TTTTTTTTCTTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5010#0      TGTCTGAGAAGCCGAGCTGAAGAATCAGAGGGGCTCTGAAGATTCTGACAGCTAGGTTTG 60
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      AATCAAGATGCATCTCACCGGCCGAATTGATTGCTGTTGATCAAACGCCTTCTTCTCTGA 120
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      CGAAATTTCTGATCGATGCTTTGGTAGTCGGAGAAGTTCTGCGGCGGCGATGCAGTCGGA 180
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      GGAGGTGAAAATGCGGTTCGGCCGGTGTCCGTACTGCCGCGCCATGATCTACCAGAACCC 240
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      CAAGGCCGTCATCTTCTACTGCAGCAGATGCCGCACTCCGATCCGAGGCAAGAACCCGGA 300
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      GCCGACGGATGAGGCGGAGTACGCGCTGAGCAGGCTGGAGATCCTCTCCGCCGACACCGC 360
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      GTCGGTGTTCTCCGACGAGCCGGAGGACGCCGGGTCGGACCGGCGCGCCGACGAGGTCCG 420
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      GCCGTTGTCGAGGCGGACGAGGCGGCCGTCGAGCTCGTCTGACTGGACGACGACGACGGA 480
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      TTCGGAGCGGAGCGAGGAGGCGTTCTACACGCCAAGGAACGCGCAGGAGGGGCGGCCATG 540
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      GCAGTCGCCGTCGCCGGTGAGCTCGCAGGAGCTCGGGGCGTCCGGTGGTGGTGGTGGCTT 600
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      GCCTCGACCTCCCGATGAGCCAGGCGCCGTCGCGGCGGCGCGCCTGATGGACCCGGCGTT 660
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      TCACAAGGAGCTCCTCCACGCGCTGGACAACCTCCGCAGCTTGATCGTCACCATCGAGCA 720
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      GCCGCGCCCGGCGAGCGGCGGCGGCGGGAGGGCCCTGACGCGGCGCGATTCGCGGCTCTT 780
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      CCGCCGGCTGGAGTCGCAGCTGGAGCGGGCGCTTCCGCCGCAGGACACCGCTTCCACGTC 840
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      GGCGTCGTCATCCAGCTGCCGCGGCGACGGCGGCGGCGGGCGTCCGTCGGCGCCCGCGCG 900
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      GCGGGAGGGCACCGACCCCTGCCGCCCGGTCCTGGGCGGCGCGCCATTCGTGATCTGCGG 960
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      CAAGTGCTCGGAGCTTCTGCGGACGCCGCCGCCGCCGCGGCCACGGAGGAGGAGGTGGAC 1020
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      CACCAGGATACGGTGCGGCGAGTGCAACGAAGTGCTCGAGCTGTCCCTTCCCGCCGGCGG 1080
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      CGTCCCGGCTCAGCACCGGCCGATCAGGACGTGCTCGGCGCCGCTGGTCTCCGACCACCA 1140
consensus_5010#1      ------------------------------------------------------------
                                                                                  

consensus_5010#0      CCGGCCACTGCCACGACGGCTGGAGTGAGGCGAAGAGCGCGCACGGTGGCCATGATCGAT 1200
consensus_5010#1      --------------------------------------------------CNTGANCGAT 10
                                                                        * *** ****

consensus_5010#0      TTGTTGATGGAGGGCTCACTGCTGAGCTGAAAGGGGGAAAACCTCACGCTAAGATGGATG 1260
consensus_5010#1      TTGTTGATGGAGGGCNNACTGCTGANCTGAAAGGGGGAAAACCTCACNCTNANATGGATG 70
                      ***************  ******** ********************* ** * *******

consensus_5010#0      GATGGGATTGAGGTTCTCCGCCATCGAATGCACGTTGCCTTTGTCATTAACATGTGGGCT 1320
consensus_5010#1      GATGGGATTGAGGTTCCCCGCCATCGAATGCNCGTTGCCTTTGTCATTAACATNTGGGCT 130
                      **************** ************** ********************* ******

consensus_5010#0      CAGGAATCATCGGGCTCACATGTTAGTGACAAAGTCACATGACTTCGACCTCGAAGGATG 1380
consensus_5010#1      CAGGAATCATCGGGCTCACATNTTAGTGACAAANTCACATGACTTCGACCNCGAAGGATG 190
                      ********************* *********** **************** *********

consensus_5010#0      CTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGATTTTTTTTCT 1440
consensus_5010#1      NTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGATTTTTTTTCT 250
                       ***********************************************************

consensus_5010#0      TTTTGTTATTATTAGTCGCTAACCCAGACGTTACAAATGCTACGAAATTGGCTA 1494
consensus_5010#1      TTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------- 287
                      ********  *  *      **   * *    * ***