These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1494 fasta sequence [TGTCTGAGAAGCCGAGCTGAAGAATCAGAGGGGCTCTGAAGATTCTGACAGCTAGGTTTGAATCAAGATGCATCTCACCGGCCGAATTGATTGCTGTTGATCAAACGCCTTCTTCTCTGACGAAATTTCTGATCGATGCTTTGGTAGTCGGAGAAGTTCTGCGGCGGCGATGCAGTCGGAGGAGGTGAAAATGCGGTTCGGCCGGTGTCCGTACTGCCGCGCCATGATCTACCAGAACCCCAAGGCCGTCATCTTCTACTGCAGCAGATGCCGCACTCCGATCCGAGGCAAGAACCCGGAGCCGACGGATGAGGCGGAGTACGCGCTGAGCAGGCTGGAGATCCTCTCCGCCGACACCGCGTCGGTGTTCTCCGACGAGCCGGAGGACGCCGGGTCGGACCGGCGCGCCGACGAGGTCCGGCCGTTGTCGAGGCGGACGAGGCGGCCGTCGAGCTCGTCTGACTGGACGACGACGACGGATTCGGAGCGGAGCGAGGAGGCGTTCTACACGCCAAGGAACGCGCAGGAGGGGCGGCCATGGCAGTCGCCGTCGCCGGTGAGCTCGCAGGAGCTCGGGGCGTCCGGTGGTGGTGGTGGCTTGCCTCGACCTCCCGATGAGCCAGGCGCCGTCGCGGCGGCGCGCCTGATGGACCCGGCGTTTCACAAGGAGCTCCTCCACGCGCTGGACAACCTCCGCAGCTTGATCGTCACCATCGAGCAGCCGCGCCCGGCGAGCGGCGGCGGCGGGAGGGCCCTGACGCGGCGCGATTCGCGGCTCTTCCGCCGGCTGGAGTCGCAGCTGGAGCGGGCGCTTCCGCCGCAGGACACCGCTTCCACGTCGGCGTCGTCATCCAGCTGCCGCGGCGACGGCGGCGGCGGGCGTCCGTCGGCGCCCGCGCGGCGGGAGGGCACCGACCCCTGCCGCCCGGTCCTGGGCGGCGCGCCATTCGTGATCTGCGGCAAGTGCTCGGAGCTTCTGCGGACGCCGCCGCCGCCGCGGCCACGGAGGAGGAGGTGGACCACCAGGATACGGTGCGGCGAGTGCAACGAAGTGCTCGAGCTGTCCCTTCCCGCCGGCGGCGTCCCGGCTCAGCACCGGCCGATCAGGACGTGCTCGGCGCCGCTGGTCTCCGACCACCACCGGCCACTGCCACGACGGCTGGAGTGAGGCGAAGAGCGCGCACGGTGGCCATGATCGATTTGTTGATGGAGGGCTCACTGCTGAGCTGAAAGGGGGAAAACCTCACGCTAAGATGGATGGATGGGATTGAGGTTCTCCGCCATCGAATGCACGTTGCCTTTGTCATTAACATGTGGGCTCAGGAATCATCGGGCTCACATGTTAGTGACAAAGTCACATGACTTCGACCTCGAAGGATGCTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGATTTTTTTTCTTTTTGTTATTATTAGTCGCTAACCCAGACGTTACAAATGCTACGAAATTGGCTA] [+] EMBL AK109153 [TGTCTGAGAAGCCGAGCTGAAGAATCAGAGGGGCTCTGAAGATTCTGACAGCTAGGTTTGAATCAAGATGCATCTCACCGGCCGAATTGATTGCTGTTGATCAAACGCCTTCTTCTCTGACGAAATTTCTGATCGATGCTTTGGTAGTCGGAGAAGTTCTGCGGCGGCGATGCAGTCGGAGGAGGTGAAAATGCGGTTCGGCCGGTGTCCGTACTGCCGCGCCATGATCTACCAGAACCCCAAGGCCGTCATCTTCTACTGCAGCAGATGCCGCACTCCGATCCGAGGCAAGAACCCGGAGCCGACGGATGAGGCGGAGTACGCGCTGAGCAGGCTGGAGATCCTCTCCGCCGACACCGCGTCGGTGTTCTCCGACGAGCCGGAGGACGCCGGGTCGGACCGGCGCGCCGACGAGGTCCGGCCGTTGTCGAGGCGGACGAGGCGGCCGTCGAGCTCGTCTGACTGGACGACGACGACGGATTCGGAGCGGAGCGAGGAGGCGTTCTACACGCCAAGGAACGCGCAGGAGGGGCGGCCATGGCAGTCGCCGTCGCCGGTGAGCTCGCAGGAGCTCGGGGCGTCCGGTGGTGGTGGTGGCTTGCCTCGACCTCCCGATGAGCCAGGCGCCGTCGCGGCGGCGCGCCTGATGGACCCGGCGTTTCACAAGGAGCTCCTCCACGCGCTGGACAACCTCCGCAGCTTGATCGTCACCATCGAGCAGCCGCGCCCGGCGAGCGGCGGCGGCGGGAGGGCCCTGACGCGGCGCGATTCGCGGCTCTTCCGCCGGCTGGAGTCGCAGCTGGAGCGGGCGCTTCCGCCGCAGGACACCGCTTCCACGTCGGCGTCGTCATCCAGCTGCCGCGGCGACGGCGGCGGCGGGCGTCCGTCGGCGCCCGCGCGGCGGGAGGGCACCGACCCCTGCCGCCCGGTCCTGGGCGGCGCGCCATTCGTGATCTGCGGCAAGTGCTCGGAGCTTCTGCGGACGCCGCCGCCGCCGCGGCCACGGAGGAGGAGGTGGACCACCAGGATACGGTGCGGCGAGTGCAACGAAGTGCTCGAGCTGTCCCTTCCCGCCGGCGGCGTCCCGGCTCAGCACCGGCCGATCAGGACGTGCTCGGCGCCGCTGGTCTCCGACCACCACCGGCCACTGCCACGACGGCTGGAGTGAGGCGAAGAGCGCGCACGGTGGCCATGATCGATTTGTTGATGGAGGGCTCACTGCTGAGCTGAAAGGGGGAAAACCTCACGCTAAGATGGATGGATGGGATTGAGGTTCTCCGCCATCGAATGCACGTTGCCTTTGTCATTAACATGTGGGCTCAGGAATCATCGGGCTCACATGTTAGTGACAAAGTCACATGACTTCGACCTCGAAGGATGCTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGATTTTTTTTCTTTTTGTTATTATTAGTCGCTAACCCAGACGTTACAAATGCTACGAAATTGGCTA] consensusID : consensus_5010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 287 fasta sequence [CNTGANCGATTTGTTGATGGAGGGCNNACTGCTGANCTGAAAGGGGGAAAACCTCACNCTNANATGGATGGATGGGATTGAGGTTCCCCGCCATCGAATGCNCGTTGCCTTTGTCATTAACATNTGGGCTCAGGAATCATCGGGCTCACATNTTAGTGACAAANTCACATGACTTCGACCNCGAAGGATGNTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGATTTTTTTTCTTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU197404 [CNTGANCGATTTGTTGATGGAGGGCNNACTGCTGANCTGAAAGGGGGAAAACCTCACNCTNANATGGATGGATGGGATTGAGGTTCCCCGCCATCGAATGCNCGTTGCCTTTGTCATTAACATNTGGGCTCAGGAATCATCGGGCTCACATNTTAGTGACAAANTCACATGACTTCGACCNCGAAGGATGNTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGATTTTTTTTCTTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU197403 [ ATTTGTTGATGGAGGGCTCACTGNTGAGCTGAAAGGGGGAAAACCTCACGCTAANATGGATGGATGGGATTGAGGTTCNCCNCCATCGAATGCNCGTTGCCTTTGTCATTAACATGTGGGCTCAGGAATCANCGGGCTCACATGTTAGTGACAAAGTCACATGACTTCGACCNCGAAGGATGCTGANCTGGATTGTTGATGGAAGTTTTGAANAGTTGTTTTTGAANAATGATTTTTTTTCTTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5010#0 TGTCTGAGAAGCCGAGCTGAAGAATCAGAGGGGCTCTGAAGATTCTGACAGCTAGGTTTG 60 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 AATCAAGATGCATCTCACCGGCCGAATTGATTGCTGTTGATCAAACGCCTTCTTCTCTGA 120 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 CGAAATTTCTGATCGATGCTTTGGTAGTCGGAGAAGTTCTGCGGCGGCGATGCAGTCGGA 180 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 GGAGGTGAAAATGCGGTTCGGCCGGTGTCCGTACTGCCGCGCCATGATCTACCAGAACCC 240 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 CAAGGCCGTCATCTTCTACTGCAGCAGATGCCGCACTCCGATCCGAGGCAAGAACCCGGA 300 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 GCCGACGGATGAGGCGGAGTACGCGCTGAGCAGGCTGGAGATCCTCTCCGCCGACACCGC 360 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 GTCGGTGTTCTCCGACGAGCCGGAGGACGCCGGGTCGGACCGGCGCGCCGACGAGGTCCG 420 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 GCCGTTGTCGAGGCGGACGAGGCGGCCGTCGAGCTCGTCTGACTGGACGACGACGACGGA 480 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 TTCGGAGCGGAGCGAGGAGGCGTTCTACACGCCAAGGAACGCGCAGGAGGGGCGGCCATG 540 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 GCAGTCGCCGTCGCCGGTGAGCTCGCAGGAGCTCGGGGCGTCCGGTGGTGGTGGTGGCTT 600 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 GCCTCGACCTCCCGATGAGCCAGGCGCCGTCGCGGCGGCGCGCCTGATGGACCCGGCGTT 660 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 TCACAAGGAGCTCCTCCACGCGCTGGACAACCTCCGCAGCTTGATCGTCACCATCGAGCA 720 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 GCCGCGCCCGGCGAGCGGCGGCGGCGGGAGGGCCCTGACGCGGCGCGATTCGCGGCTCTT 780 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 CCGCCGGCTGGAGTCGCAGCTGGAGCGGGCGCTTCCGCCGCAGGACACCGCTTCCACGTC 840 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 GGCGTCGTCATCCAGCTGCCGCGGCGACGGCGGCGGCGGGCGTCCGTCGGCGCCCGCGCG 900 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 GCGGGAGGGCACCGACCCCTGCCGCCCGGTCCTGGGCGGCGCGCCATTCGTGATCTGCGG 960 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 CAAGTGCTCGGAGCTTCTGCGGACGCCGCCGCCGCCGCGGCCACGGAGGAGGAGGTGGAC 1020 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 CACCAGGATACGGTGCGGCGAGTGCAACGAAGTGCTCGAGCTGTCCCTTCCCGCCGGCGG 1080 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 CGTCCCGGCTCAGCACCGGCCGATCAGGACGTGCTCGGCGCCGCTGGTCTCCGACCACCA 1140 consensus_5010#1 ------------------------------------------------------------ consensus_5010#0 CCGGCCACTGCCACGACGGCTGGAGTGAGGCGAAGAGCGCGCACGGTGGCCATGATCGAT 1200 consensus_5010#1 --------------------------------------------------CNTGANCGAT 10 * *** **** consensus_5010#0 TTGTTGATGGAGGGCTCACTGCTGAGCTGAAAGGGGGAAAACCTCACGCTAAGATGGATG 1260 consensus_5010#1 TTGTTGATGGAGGGCNNACTGCTGANCTGAAAGGGGGAAAACCTCACNCTNANATGGATG 70 *************** ******** ********************* ** * ******* consensus_5010#0 GATGGGATTGAGGTTCTCCGCCATCGAATGCACGTTGCCTTTGTCATTAACATGTGGGCT 1320 consensus_5010#1 GATGGGATTGAGGTTCCCCGCCATCGAATGCNCGTTGCCTTTGTCATTAACATNTGGGCT 130 **************** ************** ********************* ****** consensus_5010#0 CAGGAATCATCGGGCTCACATGTTAGTGACAAAGTCACATGACTTCGACCTCGAAGGATG 1380 consensus_5010#1 CAGGAATCATCGGGCTCACATNTTAGTGACAAANTCACATGACTTCGACCNCGAAGGATG 190 ********************* *********** **************** ********* consensus_5010#0 CTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGATTTTTTTTCT 1440 consensus_5010#1 NTGATCTGGATTGTTGATGGAAGTTTTGAATAGTTGTTTTTGAAGAATGATTTTTTTTCT 250 *********************************************************** consensus_5010#0 TTTTGTTATTATTAGTCGCTAACCCAGACGTTACAAATGCTACGAAATTGGCTA 1494 consensus_5010#1 TTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------- 287 ******** * * ** * * * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||