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Oryza sativa
cluster # 5011 cluster # 5011       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5011#0 length = 1492 sequences # 2  
consensus_5011#1 length = 176 sequences # 1  

consensusID : consensus_5011#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1492
fasta sequence
                              [CTCAATTAAACTCCACTAAACCTCCCTATGGCCTATGCCATCCACCAAACAAGCAACTGAATCGGAATCGCGTATTGCTTTCGAGCTCCAATTCAACAGATTAGCAGAACACAGGGCGCTGAGCTGATGGCGAATTGTGGCCGGAGGTTTGCCGCCGCCGGCGCTCCGGCGACGGCGAGACGGTGTAATCTGGAGCTGTTCCTCGAGGCCACCACGCCGGTTGTCCCGACGACAGCCTGCTCCTCCAAGAAGAGCATGAATGGTTGGAAGCAATCTGATGAAGAAAATGCGCTGCCATTCTTCAGTTTGGGCGACCTCTGGGATGGGTTCAGAGAGAGCAGCGCATATGGTATCGCTGTGCCAATTGTTCTGAATGGTTGCAGTGACGGTGTGGTGCAGTATTACGTCCCTTACTTATCTGCAATCCAGCTTTATGGAAGATTAAGGAGGCATTTCTACCATTCCAGGCCAAGTGGAGAAGACAGCGACGGCGACTACTGTCAAGACACAGGCAGTGAAGAGATGAGCGACCTTGAGCACGACTCATGTCCAAGCAGCACGGATGCGTTCTCAGTCCAAGATACCACCTGCGAAACCTCCACCAGCGAAGCATCGAGCGACGAAAGCGAATCAACGAGAATTTCCCACGAGCAGCTCATCTTCGAGTTTCTGGAATCCGAGCCTCCCTACCAGCGTGAACCGCTAGCTGACAAGATTTGTAGTCTTGCCAGGGGATTTCCGGAGCTGAATACTCTCAGGAGCTGTGATTTGTCGCCAACCAGTTGGATGTCCGTCGCATGGTATCCAATATACCGAATTCCGACGGGACCAACACTATGCGATCTGGACGCCTGCTTCCTCACATATCATCCCCTCTCCACGCAGCTCACAGGCGGCATCTGCCCGGAGCCAAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCCCGACGTTCGCCATGGCGTCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAGACAGGCAGCTGGTCGCCTCCCTCTCGCACGCCGCCG-ACGCCTGGCTCGGCCTCCTCGGAGTTCACCACCCGGATCACCGCTTCTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGATGAGTCGATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTTTTTTTTTGTGTGTCTCATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGTTGGATCACAAAGCGTGCATCCTGTTTTTGTTTTCCAGTAATGGTTTCAGAGAAAGATTAACCAAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAGCTGGTCTAGTGTTTATGTTTAAACGTGATATTTTGTTGTACCAAAACTCAGATACGAGTAACACTCAAGCAGCTGGTGTACTTCTGTTGTACTGCTTCTAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK073435             [CTCAATTAAACTCCACTAAACCTCCCTATGGCCTATGCCATCCACCAAACAAGCAACTGAATCGGAATCGCGTATTGCTTTCGAGCTCCAATTCAACAGATTAGCAGAACACAGGGCGCTGAGCTGATGGCGAATTGTGGCCGGAGGTTTGCCGCCGCCGGCGCTCCGGCGACGGCGAGACGGTGTAATCTGGAGCTGTTCCTCGAGGCCACCACGCCGGTTGTCCCGACGACAGCCTGCTCCTCCAAGAAGAGCATGAATGGTTGGAAGCAATCTGATGAAGAAAATGCGCTGCCATTCTTCAGTTTGGGCGACCTCTGGGATGGGTTCAGAGAGAGCAGCGCATATGGTATCGCTGTGCCAATTGTTCTGAATGGTTGCAGTGACGGTGTGGTGCAGTATTACGTCCCTTACTTATCTGCAATCCAGCTTTATGGAAGATTAAGGAGGCATTTCTACCATTCCAGGCCAAGTGGAGAAGACAGCGACGGCGACTACTGTCAAGACACAGGCAGTGAAGAGATGAGCGACCTTGAGCACGACTCATGTCCAAGCAGCACGGATGCGTTCTCAGTCCAAGATACCACCTGCGAAACCTCCACCAGCGAAGCATCGAGCGACGAAAGCGAATCAACGAGAATTTCCCACGAGCAGCTCATCTTCGAGTTTCTGGAATCCGAGCCTCCCTACCAGCGTGAACCGCTAGCTGACAAGATTTGTAGTCTTGCCAGGGGATTTCCGGAGCTGAATACTCTCAGGAGCTGTGATTTGTCGCCAACCAGTTGGATGTCCGTCGCATGGTATCCAATATACCGAATTCCGACGGGACCAACACTATGCGATCTGGACGCCTGCTTCCTCACATATCATCCCCTCTCCACGCAGCTCACAGGCGGCATCTGCCCGGAGCCAAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCCCGACGTTCGCCATGGCGTCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAGACAGGCAGCTGGTCGCCTCCCTCTCGCACGCCGCCG ACGCCTGGCTCGGCCTCCTCGGAGTTCACCACCCGGATCACCGCTTCTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGATGAGTCGATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTTTTTTTTTGTGTGTCTCATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGTTGGATCACAAAGCGTGCATCCTGTTTTTGTTTTCCAGTAATGGTTTCAGAGAAAGATTAACCAAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAGCTGGTCTAGTGTTTATGTTTAAACGTGATATTTTGTTGT                                                                               ]
[-] EMBL CF304104             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCCCGACGTTCGCCATGGCGTCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAGACAGGCAGNTGGTCGCCTCCCTTTCGCACGCCGCCGAACGCCTGGCTCGGCCTCCTCGGAGTTCACCACCCGGATCACCGCTTTTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGATGAGTCGATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTTTTTTTTTGTGTGTCTCATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGTTGGATCACAAAGCGTGCATCCTGTTTTTGTTTTCCAGTAATGGTTTCAGAGAAAGATTAACCAAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAGCTGGTCTAGTGTTTATGTTTAAACGTGATATTTTGTTGTACCAAAACTCAGATACGAGTAACACTCAAGCAGCTGGTGTACTTCTGTTGTACTGCTTCTAAAAAAAAAAAAAAAAAAA]


>consensus_5011#0 CTCAATTAAACTCCACTAAACCTCCCTATGGCCTATGCCATCCACCAAACAAGCAACTGA ATCGGAATCGCGTATTGCTTTCGAGCTCCAATTCAACAGATTAGCAGAACACAGGGCGCT GAGCTGATGGCGAATTGTGGCCGGAGGTTTGCCGCCGCCGGCGCTCCGGCGACGGCGAGA CGGTGTAATCTGGAGCTGTTCCTCGAGGCCACCACGCCGGTTGTCCCGACGACAGCCTGC TCCTCCAAGAAGAGCATGAATGGTTGGAAGCAATCTGATGAAGAAAATGCGCTGCCATTC TTCAGTTTGGGCGACCTCTGGGATGGGTTCAGAGAGAGCAGCGCATATGGTATCGCTGTG CCAATTGTTCTGAATGGTTGCAGTGACGGTGTGGTGCAGTATTACGTCCCTTACTTATCT GCAATCCAGCTTTATGGAAGATTAAGGAGGCATTTCTACCATTCCAGGCCAAGTGGAGAA GACAGCGACGGCGACTACTGTCAAGACACAGGCAGTGAAGAGATGAGCGACCTTGAGCAC GACTCATGTCCAAGCAGCACGGATGCGTTCTCAGTCCAAGATACCACCTGCGAAACCTCC ACCAGCGAAGCATCGAGCGACGAAAGCGAATCAACGAGAATTTCCCACGAGCAGCTCATC TTCGAGTTTCTGGAATCCGAGCCTCCCTACCAGCGTGAACCGCTAGCTGACAAGATTTGT AGTCTTGCCAGGGGATTTCCGGAGCTGAATACTCTCAGGAGCTGTGATTTGTCGCCAACC AGTTGGATGTCCGTCGCATGGTATCCAATATACCGAATTCCGACGGGACCAACACTATGC GATCTGGACGCCTGCTTCCTCACATATCATCCCCTCTCCACGCAGCTCACAGGCGGCATC TGCCCGGAGCCAAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCCCG ACGTTCGCCATGGCGTCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAGAC AGGCAGCTGGTCGCCTCCCTCTCGCACGCCGCCGACGCCTGGCTCGGCCTCCTCGGAGTT CACCACCCGGATCACCGCTTCTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGATGAGTC GATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTTTT TTTTTGTGTGTCTCATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGTTG GATCACAAAGCGTGCATCCTGTTTTTGTTTTCCAGTAATGGTTTCAGAGAAAGATTAACC AAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAGCTGGTC TAGTGTTTATGTTTAAACGTGATATTTTGTTGTACCAAAACTCAGATACGAGTAACACTC AAGCAGCTGGTGTACTTCTGTTGTACTGCTTCTAAAAAAAAAAAAAAAAAAA



consensusID : consensus_5011#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 176
fasta sequence
                              [CCAGCGTGAACCGCTAGCTGACAAGATTTGTAGTCTTGACATGGTATTCCCGGAGCTGACTACTCTCAGGAGCTATGATTTATCGCCAACCAGGTTGGATGTCCGTCGCATGGTATCCAAGATACCGAATTCCTACGGGACCAGCACCTATGCGATCTCGACTGCAGATTCCTAAA]

[+] EMBL AA750601             [CCAGCGTGAACCGCTAGCTGACAAGATTTGTAGTCTTGACATGGTATTCCCGGAGCTGACTACTCTCAGGAGCTATGATTTATCGCCAACCAGGTTGGATGTCCGTCGCATGGTATCCAAGATACCGAATTCCTACGGGACCAGCACCTATGCGATCTCGACTGCAGATTCCTAAA]


>consensus_5011#1 CCAGCGTGAACCGCTAGCTGACAAGATTTGTAGTCTTGACATGGTATTCCCGGAGCTGAC TACTCTCAGGAGCTATGATTTATCGCCAACCAGGTTGGATGTCCGTCGCATGGTATCCAA GATACCGAATTCCTACGGGACCAGCACCTATGCGATCTCGACTGCAGATTCCTAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5011#0      CTCAATTAAACTCCACTAAACCTCCCTATGGCCTATGCCATCCACCAAACAAGCAACTGA 60
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      ATCGGAATCGCGTATTGCTTTCGAGCTCCAATTCAACAGATTAGCAGAACACAGGGCGCT 120
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      GAGCTGATGGCGAATTGTGGCCGGAGGTTTGCCGCCGCCGGCGCTCCGGCGACGGCGAGA 180
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      CGGTGTAATCTGGAGCTGTTCCTCGAGGCCACCACGCCGGTTGTCCCGACGACAGCCTGC 240
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      TCCTCCAAGAAGAGCATGAATGGTTGGAAGCAATCTGATGAAGAAAATGCGCTGCCATTC 300
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      TTCAGTTTGGGCGACCTCTGGGATGGGTTCAGAGAGAGCAGCGCATATGGTATCGCTGTG 360
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      CCAATTGTTCTGAATGGTTGCAGTGACGGTGTGGTGCAGTATTACGTCCCTTACTTATCT 420
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      GCAATCCAGCTTTATGGAAGATTAAGGAGGCATTTCTACCATTCCAGGCCAAGTGGAGAA 480
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      GACAGCGACGGCGACTACTGTCAAGACACAGGCAGTGAAGAGATGAGCGACCTTGAGCAC 540
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      GACTCATGTCCAAGCAGCACGGATGCGTTCTCAGTCCAAGATACCACCTGCGAAACCTCC 600
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      ACCAGCGAAGCATCGAGCGACGAAAGCGAATCAACGAGAATTTCCCACGAGCAGCTCATC 660
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      TTCGAGTTTCTGGAATCCGAGCCTCCCTACCAGCGTGAACCGCTAGCTGACAAGATTTGT 720
consensus_5011#1      -----------------------------CCAGCGTGAACCGCTAGCTGACAAGATTTGT 31
                                                   *******************************

consensus_5011#0      AGTCTTGCCAGGGGATTTCCGGAGCTGAATACTCTCAGGAGCTGTGATTTGTCGCCAACC 780
consensus_5011#1      AGTCTTGACATGGTATTCCCGGAGCTGACTACTCTCAGGAGCTATGATTTATCGCCAACC 91
                      ******* ** ** *** ********** ************** ****** *********

consensus_5011#0      AG-TTGGATGTCCGTCGCATGGTATCCAATATACCGAATTCCGACGGGACCAACAC-TAT 838
consensus_5011#1      AGGTTGGATGTCCGTCGCATGGTATCCAAGATACCGAATTCCTACGGGACCAGCACCTAT 151
                      ** ************************** ************ ********* *** ***

consensus_5011#0      GCGATCTGGACGCCTGCTTCCTCACATATCATCCCCTCTCCACGCAGCTCACAGGCGGCA 898
consensus_5011#1      GCGATCTCGACTGCAGATTCCTAAA----------------------------------- 176
                      ******* ***  * * ***** *                                    

consensus_5011#0      TCTGCCCGGAGCCAAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCC 958
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      CGACGTTCGCCATGGCGTCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAG 1018
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      ACAGGCAGCTGGTCGCCTCCCTCTCGCACGCCGCCGACGCCTGGCTCGGCCTCCTCGGAG 1078
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      TTCACCACCCGGATCACCGCTTCTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGATGAG 1138
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      TCGATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTT 1198
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      TTTTTTTGTGTGTCTCATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGT 1258
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      TGGATCACAAAGCGTGCATCCTGTTTTTGTTTTCCAGTAATGGTTTCAGAGAAAGATTAA 1318
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      CCAAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAGCTGG 1378
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      TCTAGTGTTTATGTTTAAACGTGATATTTTGTTGTACCAAAACTCAGATACGAGTAACAC 1438
consensus_5011#1      ------------------------------------------------------------
                                                                                  

consensus_5011#0      TCAAGCAGCTGGTGTACTTCTGTTGTACTGCTTCTAAAAAAAAAAAAAAAAAAA 1492
consensus_5011#1      ------------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)