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Oryza sativa
cluster # 5013 cluster # 5013       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5013#0 length = 1688 sequences # 1  
consensus_5013#1 length = 1515 sequences # 1  
consensus_5013#2 length = 1437 sequences # 1  

consensusID : consensus_5013#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1688
fasta sequence
                              [TCCCAACACGATAGCCCCTTGAGTGCTATAAATTCAGCCCCAGATTACAGCTGCATATGCTACACGCATTGTTAGTTTGCATGCAAGCTTGATCGATCAGCTTCAGAGTTTGGATCACCAAGAAGTTCAGAATCCTCCCAATTCGTTCTTCATTTGCAGCAGTAATTCATTATTCATCCACCAACATGTCTGCTAATCCCAACCAGTCGTTCGACGATTTCAACAAGCAAGCCTCCAGCAATTTCAACTCCTTCCTAGCCATCGTCGTCGTGCTTTCAGTGGTGAGCATTGCTGGATCAGTCGCCATTGTTTACCTCGTGTACAGATGTGTCAAGAAGAATGGCCTCCCGGCCGTCAACATCAACACCAACCCGACGGCGGCGGCGGCGATGTACGCCGTGGTGCCCGACTCCCAGATACGCGACGCCACCGTCGAGAGGTTTCTCAAAGAGATCGCCGGCGAGAAGCCCATCCGGTTCACGGCGCAGCAGCTGGCCGGATTCACGAACAACTACTCGGCCCGGCTCGGCGCCGGCGGCTTCGGCACCGTGTACAAGGGCATGCTCCCGAACGGCCTCACGGTCGCCGTGAAGCGCCTCCACGTCGGCGGCCATGGCGACGGGTGGTCGACGTCGCAGGAGCAGTTCATGGCGGAGGTGGGCAGCGTCGGGAGGACTCACCACATCAACCTCGTCAGGCTGTTCGGCTTCTGCTTCGACGCCGACGTGCGCGCGCTGGTGTACGAGTACATGGACAACGGGGCGCTCGACGCCTACCTGTTCGACCGGAGCCGCGCCGTCGCCGTCGCGACGCGGCGCGCCATCGCCGTCGGTGTCGCGAGGGGGCTCCGCTACCTCCACGAGGAGTGCCAGCACAAGATCGTGCACTACGACATCAAGCCCGGCAACGTCCTGCTCGACGGCGGCCTGACGCCCAAGGTGGCCGACTTCGGGCTGGCGCGGCTGGCGAGCCGCGGCGACACGCACGTCTCGGTGTCCGGCATGCGCGGCACCCCGGGCTACGCCGCGCCGGAGATGTGGATGCAGGCGGGCGTGACCGAGAAGTGCGACGTGTACAGCTTCGGCGTGCTCCTGTTCGAGATTGTCCGCCGGCGGCGGAACCTCGACGACGGCGGCGCGCCGGGGAGCCAGCAGCAGTGGTTCCCGATGCTGGCGTGGAGCAAGCACGAGGCCGGACACCTCGCCGAGGCCATCGAGGGCTGCGACGCCATGGACAAGCAGGAGAGGGAGACGGTGGAGAGGATGTGCAAGGTGGCGTTCTGGTGCGTGCAGCAGCAGCCGGAGGCGAGGCCGCCGATGAGCGCCGTGGTGAGGATGCTGGAAGGGGAGGTGGACATCGACGCGCCGCCGGTGAACCCGTTCCAGCATTTGGTCGCGTCGCCGGCGGCTGCGCTTAGGTGGACAAGCACTACAGATTCAGCTGAAAGTGATAACTCATTGAGATCAGGGTCTCGTCAGTCTGCAGAGGTGATCATTCCAATTGGATCATTACATTGTTAAGAGCAGGTACAATAGCAGGCTATAATTCAGCTATAAACATATTTTAAATAGATAAAGGAAGAGTGAGAAGAGCAGTGGGTTACAGATCTGTAGCCAGCTGCAGCACGAACTCTAAGACGTAATGTGTGTATGACAGGTAGGACTGGGTATTAATAGTATAGTAAGCAA]

[+] EMBL AK068992             [TCCCAACACGATAGCCCCTTGAGTGCTATAAATTCAGCCCCAGATTACAGCTGCATATGCTACACGCATTGTTAGTTTGCATGCAAGCTTGATCGATCAGCTTCAGAGTTTGGATCACCAAGAAGTTCAGAATCCTCCCAATTCGTTCTTCATTTGCAGCAGTAATTCATTATTCATCCACCAACATGTCTGCTAATCCCAACCAGTCGTTCGACGATTTCAACAAGCAAGCCTCCAGCAATTTCAACTCCTTCCTAGCCATCGTCGTCGTGCTTTCAGTGGTGAGCATTGCTGGATCAGTCGCCATTGTTTACCTCGTGTACAGATGTGTCAAGAAGAATGGCCTCCCGGCCGTCAACATCAACACCAACCCGACGGCGGCGGCGGCGATGTACGCCGTGGTGCCCGACTCCCAGATACGCGACGCCACCGTCGAGAGGTTTCTCAAAGAGATCGCCGGCGAGAAGCCCATCCGGTTCACGGCGCAGCAGCTGGCCGGATTCACGAACAACTACTCGGCCCGGCTCGGCGCCGGCGGCTTCGGCACCGTGTACAAGGGCATGCTCCCGAACGGCCTCACGGTCGCCGTGAAGCGCCTCCACGTCGGCGGCCATGGCGACGGGTGGTCGACGTCGCAGGAGCAGTTCATGGCGGAGGTGGGCAGCGTCGGGAGGACTCACCACATCAACCTCGTCAGGCTGTTCGGCTTCTGCTTCGACGCCGACGTGCGCGCGCTGGTGTACGAGTACATGGACAACGGGGCGCTCGACGCCTACCTGTTCGACCGGAGCCGCGCCGTCGCCGTCGCGACGCGGCGCGCCATCGCCGTCGGTGTCGCGAGGGGGCTCCGCTACCTCCACGAGGAGTGCCAGCACAAGATCGTGCACTACGACATCAAGCCCGGCAACGTCCTGCTCGACGGCGGCCTGACGCCCAAGGTGGCCGACTTCGGGCTGGCGCGGCTGGCGAGCCGCGGCGACACGCACGTCTCGGTGTCCGGCATGCGCGGCACCCCGGGCTACGCCGCGCCGGAGATGTGGATGCAGGCGGGCGTGACCGAGAAGTGCGACGTGTACAGCTTCGGCGTGCTCCTGTTCGAGATTGTCCGCCGGCGGCGGAACCTCGACGACGGCGGCGCGCCGGGGAGCCAGCAGCAGTGGTTCCCGATGCTGGCGTGGAGCAAGCACGAGGCCGGACACCTCGCCGAGGCCATCGAGGGCTGCGACGCCATGGACAAGCAGGAGAGGGAGACGGTGGAGAGGATGTGCAAGGTGGCGTTCTGGTGCGTGCAGCAGCAGCCGGAGGCGAGGCCGCCGATGAGCGCCGTGGTGAGGATGCTGGAAGGGGAGGTGGACATCGACGCGCCGCCGGTGAACCCGTTCCAGCATTTGGTCGCGTCGCCGGCGGCTGCGCTTAGGTGGACAAGCACTACAGATTCAGCTGAAAGTGATAACTCATTGAGATCAGGGTCTCGTCAGTCTGCAGAGGTGATCATTCCAATTGGATCATTACATTGTTAAGAGCAGGTACAATAGCAGGCTATAATTCAGCTATAAACATATTTTAAATAGATAAAGGAAGAGTGAGAAGAGCAGTGGGTTACAGATCTGTAGCCAGCTGCAGCACGAACTCTAAGACGTAATGTGTGTATGACAGGTAGGACTGGGTATTAATAGTATAGTAAGCAA]


>consensus_5013#0 TCCCAACACGATAGCCCCTTGAGTGCTATAAATTCAGCCCCAGATTACAGCTGCATATGC TACACGCATTGTTAGTTTGCATGCAAGCTTGATCGATCAGCTTCAGAGTTTGGATCACCA AGAAGTTCAGAATCCTCCCAATTCGTTCTTCATTTGCAGCAGTAATTCATTATTCATCCA CCAACATGTCTGCTAATCCCAACCAGTCGTTCGACGATTTCAACAAGCAAGCCTCCAGCA ATTTCAACTCCTTCCTAGCCATCGTCGTCGTGCTTTCAGTGGTGAGCATTGCTGGATCAG TCGCCATTGTTTACCTCGTGTACAGATGTGTCAAGAAGAATGGCCTCCCGGCCGTCAACA TCAACACCAACCCGACGGCGGCGGCGGCGATGTACGCCGTGGTGCCCGACTCCCAGATAC GCGACGCCACCGTCGAGAGGTTTCTCAAAGAGATCGCCGGCGAGAAGCCCATCCGGTTCA CGGCGCAGCAGCTGGCCGGATTCACGAACAACTACTCGGCCCGGCTCGGCGCCGGCGGCT TCGGCACCGTGTACAAGGGCATGCTCCCGAACGGCCTCACGGTCGCCGTGAAGCGCCTCC ACGTCGGCGGCCATGGCGACGGGTGGTCGACGTCGCAGGAGCAGTTCATGGCGGAGGTGG GCAGCGTCGGGAGGACTCACCACATCAACCTCGTCAGGCTGTTCGGCTTCTGCTTCGACG CCGACGTGCGCGCGCTGGTGTACGAGTACATGGACAACGGGGCGCTCGACGCCTACCTGT TCGACCGGAGCCGCGCCGTCGCCGTCGCGACGCGGCGCGCCATCGCCGTCGGTGTCGCGA GGGGGCTCCGCTACCTCCACGAGGAGTGCCAGCACAAGATCGTGCACTACGACATCAAGC CCGGCAACGTCCTGCTCGACGGCGGCCTGACGCCCAAGGTGGCCGACTTCGGGCTGGCGC GGCTGGCGAGCCGCGGCGACACGCACGTCTCGGTGTCCGGCATGCGCGGCACCCCGGGCT ACGCCGCGCCGGAGATGTGGATGCAGGCGGGCGTGACCGAGAAGTGCGACGTGTACAGCT TCGGCGTGCTCCTGTTCGAGATTGTCCGCCGGCGGCGGAACCTCGACGACGGCGGCGCGC CGGGGAGCCAGCAGCAGTGGTTCCCGATGCTGGCGTGGAGCAAGCACGAGGCCGGACACC TCGCCGAGGCCATCGAGGGCTGCGACGCCATGGACAAGCAGGAGAGGGAGACGGTGGAGA GGATGTGCAAGGTGGCGTTCTGGTGCGTGCAGCAGCAGCCGGAGGCGAGGCCGCCGATGA GCGCCGTGGTGAGGATGCTGGAAGGGGAGGTGGACATCGACGCGCCGCCGGTGAACCCGT TCCAGCATTTGGTCGCGTCGCCGGCGGCTGCGCTTAGGTGGACAAGCACTACAGATTCAG CTGAAAGTGATAACTCATTGAGATCAGGGTCTCGTCAGTCTGCAGAGGTGATCATTCCAA TTGGATCATTACATTGTTAAGAGCAGGTACAATAGCAGGCTATAATTCAGCTATAAACAT ATTTTAAATAGATAAAGGAAGAGTGAGAAGAGCAGTGGGTTACAGATCTGTAGCCAGCTG CAGCACGAACTCTAAGACGTAATGTGTGTATGACAGGTAGGACTGGGTATTAATAGTATA GTAAGCAA



consensusID : consensus_5013#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1515
fasta sequence
                              [GGAAACCCAAATCGGCGGCGGCGGCGACGCGTCGAGGAGGAGCTCGTGGTGGCAGTGGCCGAGGACGGCGAGGTTCCTGTGGGAGATGGCGCACGAGAAGCCCATCCGGTTCACGCCGCGGCAGCTCGCCGGGTTCACGCGCGGCTACTCGGCGCGGCTCGGCGCCGGCGGCTTCGGGACGGTGTACGGCGGCGCGCTCCCCAACGGCCTCGGTGTGGCCGTCAAGGTGCTCCGCAGCGGCATGGGCAGGAGGTCCGAGGAGCAGTTCATGGCGGAGGTGGGCACCATCGGGAGGACGCACCACATCAACCTCGTCAGGCTGTTCGGCTTCTGCTTCGACGCCGCCGTGCGCACGCTGGTGTACGAGTTCATGGGCGACGGCGCGCTTGATGCCTACCTGTTCGACCGGACCCGCGCCGTCGGCGACAGCGACGGCCTCCGGTCTCCCCCGTCCTCTTCGCTCTGGGCTGAGGCCGCCGTGAGTCAAAATCGGCGGAAACCCAAATCGGCGGCGGCAGCAACGCGTCGGGGAGGAGCTCGTGGTGGCAGTGGCCGAGGACGGCGAGGCTGGCGGTGATGTGCGCCTGGTTGCGGCGGAGCGGGCTGCGGAAGACCGCGGCGGAGTGGCCATGGAGGGAGCAGCAGAACGACAAGCAAAAACTCGCCGCGGCAGCGGTGGCGAGGCGATGGAAGGAGGAGAAGTTGGCGGTGGCGGCGGCGAGCTCATGGAAGGCGCGCGAGGAGGAGAACGCATCGGGATCAGTGGCGGCAGGTAGGCTCGCGAGGAAGTGAGCATAGATGGCGGAGGCGGTGCCGGCGGGGGGATTGGAAGGCGGCGGCCGCAAGAAGAGCAGCGGCGAGGCGGGAGCAGGCTGGGGAGAGTGAGAGGCGCGCGACGGTCGGCATGGGGACAGCGCATAGGGAGTGGCGGCGCTCGGCCGGCAAGGGAGATGCCGCCTCCTGCTCCCGCATCGCCGTGCCGCCATGTCCTCCTCCCACGGGCCGCCGCCGTGGATGGGAGTGGTGGCGCTCGGCCTCGTCGTCGTCGTCGGCGCCTCCGAGCAAGGATAGGGCCGCTGCCGCCGCCGTGCTCCCCGATATGGATAGGGCCGCCCCAAGCCCGAGCGCCGCCTCTCCTGCCTCGCCCCGCCGAGCTCCGAGCCGGCCACCGCCCTTCACCACCGGCGTCCTCCTCCTCCTTCGCCGCCGCATCGACGGCTTGCCCCGCTGCTCCCTCCCGGCCGCCTCAGCGACGTCATCCCTGCGAGTGCGAGAGCAGAGCGAGAGGAAGGAAAGAGAAACAGAGAAAGAGAAAGGGGAAAGAGAGGGTGACGTGGATATATGACATGTGGGGCCCACGCTGACTCAGCCGCCACATAGACCAAAACCGGGGTCAAAACCACCGAGGGATTTTGGGTGACCAGTTTTGTATAGTTAGGGGACCTCGGTTGTCTGGTATTGCGGTTCAAGGACGTTTTCGTATCTCGGTGACAAGTTCAGGGACCTCCGGTGTAC]

[+] EMBL AK109559             [GGAAACCCAAATCGGCGGCGGCGGCGACGCGTCGAGGAGGAGCTCGTGGTGGCAGTGGCCGAGGACGGCGAGGTTCCTGTGGGAGATGGCGCACGAGAAGCCCATCCGGTTCACGCCGCGGCAGCTCGCCGGGTTCACGCGCGGCTACTCGGCGCGGCTCGGCGCCGGCGGCTTCGGGACGGTGTACGGCGGCGCGCTCCCCAACGGCCTCGGTGTGGCCGTCAAGGTGCTCCGCAGCGGCATGGGCAGGAGGTCCGAGGAGCAGTTCATGGCGGAGGTGGGCACCATCGGGAGGACGCACCACATCAACCTCGTCAGGCTGTTCGGCTTCTGCTTCGACGCCGCCGTGCGCACGCTGGTGTACGAGTTCATGGGCGACGGCGCGCTTGATGCCTACCTGTTCGACCGGACCCGCGCCGTCGGCGACAGCGACGGCCTCCGGTCTCCCCCGTCCTCTTCGCTCTGGGCTGAGGCCGCCGTGAGTCAAAATCGGCGGAAACCCAAATCGGCGGCGGCAGCAACGCGTCGGGGAGGAGCTCGTGGTGGCAGTGGCCGAGGACGGCGAGGCTGGCGGTGATGTGCGCCTGGTTGCGGCGGAGCGGGCTGCGGAAGACCGCGGCGGAGTGGCCATGGAGGGAGCAGCAGAACGACAAGCAAAAACTCGCCGCGGCAGCGGTGGCGAGGCGATGGAAGGAGGAGAAGTTGGCGGTGGCGGCGGCGAGCTCATGGAAGGCGCGCGAGGAGGAGAACGCATCGGGATCAGTGGCGGCAGGTAGGCTCGCGAGGAAGTGAGCATAGATGGCGGAGGCGGTGCCGGCGGGGGGATTGGAAGGCGGCGGCCGCAAGAAGAGCAGCGGCGAGGCGGGAGCAGGCTGGGGAGAGTGAGAGGCGCGCGACGGTCGGCATGGGGACAGCGCATAGGGAGTGGCGGCGCTCGGCCGGCAAGGGAGATGCCGCCTCCTGCTCCCGCATCGCCGTGCCGCCATGTCCTCCTCCCACGGGCCGCCGCCGTGGATGGGAGTGGTGGCGCTCGGCCTCGTCGTCGTCGTCGGCGCCTCCGAGCAAGGATAGGGCCGCTGCCGCCGCCGTGCTCCCCGATATGGATAGGGCCGCCCCAAGCCCGAGCGCCGCCTCTCCTGCCTCGCCCCGCCGAGCTCCGAGCCGGCCACCGCCCTTCACCACCGGCGTCCTCCTCCTCCTTCGCCGCCGCATCGACGGCTTGCCCCGCTGCTCCCTCCCGGCCGCCTCAGCGACGTCATCCCTGCGAGTGCGAGAGCAGAGCGAGAGGAAGGAAAGAGAAACAGAGAAAGAGAAAGGGGAAAGAGAGGGTGACGTGGATATATGACATGTGGGGCCCACGCTGACTCAGCCGCCACATAGACCAAAACCGGGGTCAAAACCACCGAGGGATTTTGGGTGACCAGTTTTGTATAGTTAGGGGACCTCGGTTGTCTGGTATTGCGGTTCAAGGACGTTTTCGTATCTCGGTGACAAGTTCAGGGACCTCCGGTGTAC]


>consensus_5013#1 GGAAACCCAAATCGGCGGCGGCGGCGACGCGTCGAGGAGGAGCTCGTGGTGGCAGTGGCC GAGGACGGCGAGGTTCCTGTGGGAGATGGCGCACGAGAAGCCCATCCGGTTCACGCCGCG GCAGCTCGCCGGGTTCACGCGCGGCTACTCGGCGCGGCTCGGCGCCGGCGGCTTCGGGAC GGTGTACGGCGGCGCGCTCCCCAACGGCCTCGGTGTGGCCGTCAAGGTGCTCCGCAGCGG CATGGGCAGGAGGTCCGAGGAGCAGTTCATGGCGGAGGTGGGCACCATCGGGAGGACGCA CCACATCAACCTCGTCAGGCTGTTCGGCTTCTGCTTCGACGCCGCCGTGCGCACGCTGGT GTACGAGTTCATGGGCGACGGCGCGCTTGATGCCTACCTGTTCGACCGGACCCGCGCCGT CGGCGACAGCGACGGCCTCCGGTCTCCCCCGTCCTCTTCGCTCTGGGCTGAGGCCGCCGT GAGTCAAAATCGGCGGAAACCCAAATCGGCGGCGGCAGCAACGCGTCGGGGAGGAGCTCG TGGTGGCAGTGGCCGAGGACGGCGAGGCTGGCGGTGATGTGCGCCTGGTTGCGGCGGAGC GGGCTGCGGAAGACCGCGGCGGAGTGGCCATGGAGGGAGCAGCAGAACGACAAGCAAAAA CTCGCCGCGGCAGCGGTGGCGAGGCGATGGAAGGAGGAGAAGTTGGCGGTGGCGGCGGCG AGCTCATGGAAGGCGCGCGAGGAGGAGAACGCATCGGGATCAGTGGCGGCAGGTAGGCTC GCGAGGAAGTGAGCATAGATGGCGGAGGCGGTGCCGGCGGGGGGATTGGAAGGCGGCGGC CGCAAGAAGAGCAGCGGCGAGGCGGGAGCAGGCTGGGGAGAGTGAGAGGCGCGCGACGGT CGGCATGGGGACAGCGCATAGGGAGTGGCGGCGCTCGGCCGGCAAGGGAGATGCCGCCTC CTGCTCCCGCATCGCCGTGCCGCCATGTCCTCCTCCCACGGGCCGCCGCCGTGGATGGGA GTGGTGGCGCTCGGCCTCGTCGTCGTCGTCGGCGCCTCCGAGCAAGGATAGGGCCGCTGC CGCCGCCGTGCTCCCCGATATGGATAGGGCCGCCCCAAGCCCGAGCGCCGCCTCTCCTGC CTCGCCCCGCCGAGCTCCGAGCCGGCCACCGCCCTTCACCACCGGCGTCCTCCTCCTCCT TCGCCGCCGCATCGACGGCTTGCCCCGCTGCTCCCTCCCGGCCGCCTCAGCGACGTCATC CCTGCGAGTGCGAGAGCAGAGCGAGAGGAAGGAAAGAGAAACAGAGAAAGAGAAAGGGGA AAGAGAGGGTGACGTGGATATATGACATGTGGGGCCCACGCTGACTCAGCCGCCACATAG ACCAAAACCGGGGTCAAAACCACCGAGGGATTTTGGGTGACCAGTTTTGTATAGTTAGGG GACCTCGGTTGTCTGGTATTGCGGTTCAAGGACGTTTTCGTATCTCGGTGACAAGTTCAG GGACCTCCGGTGTAC



consensusID : consensus_5013#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1437
fasta sequence
                              [AGGCCGTCACTCTTCACATGCTTTCATCAAAACACCAAGATTACATCACCTGCTTCATGGCGTCGCCTGCCGTTTACGTGATTGCCACGATCATCTTCGTTGTGGCGTTCGCGGCGTTGCTGGTCAAGGTGTACCGGGGCGCCGAGAGCTGCGGCGCCGCGGTGGCCGCCGAGATGAAGGCGACGGCGCACTACGCCGTGGTGCCCGACGCCGCGATGCGGAGCGCGACGGTGGAGAGGTTCCTGTGGGAGATGGCGCACGAGAAGCCCATCCGGTTCACGCCGCGGCAGCTCGCCGGGTTCACGCGCGGCTACTCGGCGCGGCTCGGCGCCGGCGTCTTCGGGACGGTGTACGGCGGCGCGCTCCCCAACGGCCTCGCCGTGGCCGTCAAGGTGCTCCGCGGCGGCATGGACAGGAGGAGGTCCGAGGAGCAGTTCATGGCGGAGGTGGGCACCATCGGGAGGACGCACCACATCAACCTCGTCAGGCTGTTCGGCTTCTGCTACGACGCCGCCGTGCGCGCGCTGGTGTACGAGTACATGGGCAACGGCGCGCTCGACGCCTACCTGTTCGACCTGAGCCGCGACGTCGGCGTCCCGGCGCGGCGCGCCATCGCCATCGGCGTCGCGCGGGGGCTCCGCTACCTCCACGAGGAGTGCGAGCACAAGATCGTGCACTACGACATCAAGCCCGGCAACGTCCTGCTCGACGGCGGCATGACGCCCAAGGTGGCCGACTTCGGGCTGGCCCGGCTGGTGAACCGCGGCGACACGCACGTCTCCGTGTCCGGCATGCGCGGCACCCCCGGCTACGCCGCGCCGGAGACGTTGATGCAGTCCGGCGTGACGGAGAAGTGCGACGTGTACAGCTTCGGCATGCTCCTCCTCAAGATCGTCGGCCGGAGGAGGAACTTCGACGAGGCCGCGCCGGAGAGCCAGCAGTGGTGGCCGATGGAGGCGTGGGCCAGGTACGAGCGCGGCGAGTTGATGATGGTCGACGACGCCGCCGCCGCCATCAATCATCCGAGCGACGAGATCTGTAGTGGCAGCGACGGCGAGGCCGTGGTGACCGTGGCCGAGGCCGACGACGAGCGGCGGTGCAAGGAGGCGGTGGTGAGGATGTACCAGGTGGCGTTCTGGTGCGTGCAGCAGCGGCCGGAGGCGCGGCCGCCGATGGGCGCGGTGGTGAAGATGCTGGAGGGCGAGATGGACGTCGCGCCTCCGGTGAACCCGTTCCTGCATCTCATGGCGGCTCCGGCGCCGGTGCCGAATCCATGGGCGACGACGACGGCGAGCAGCGGAAACGCCGTCTCAGAAAACGTCGTTGTTTCTCACGGAAGTGACGGAATCGTCTCGCTTTGACTACTGAAATCTTTTGTCTGTGCGTGTGGGTCGCCACGACCTCGTTTCTTTGCATTCTACAAGTAGATTGTTTATC]

[+] EMBL AK106343             [AGGCCGTCACTCTTCACATGCTTTCATCAAAACACCAAGATTACATCACCTGCTTCATGGCGTCGCCTGCCGTTTACGTGATTGCCACGATCATCTTCGTTGTGGCGTTCGCGGCGTTGCTGGTCAAGGTGTACCGGGGCGCCGAGAGCTGCGGCGCCGCGGTGGCCGCCGAGATGAAGGCGACGGCGCACTACGCCGTGGTGCCCGACGCCGCGATGCGGAGCGCGACGGTGGAGAGGTTCCTGTGGGAGATGGCGCACGAGAAGCCCATCCGGTTCACGCCGCGGCAGCTCGCCGGGTTCACGCGCGGCTACTCGGCGCGGCTCGGCGCCGGCGTCTTCGGGACGGTGTACGGCGGCGCGCTCCCCAACGGCCTCGCCGTGGCCGTCAAGGTGCTCCGCGGCGGCATGGACAGGAGGAGGTCCGAGGAGCAGTTCATGGCGGAGGTGGGCACCATCGGGAGGACGCACCACATCAACCTCGTCAGGCTGTTCGGCTTCTGCTACGACGCCGCCGTGCGCGCGCTGGTGTACGAGTACATGGGCAACGGCGCGCTCGACGCCTACCTGTTCGACCTGAGCCGCGACGTCGGCGTCCCGGCGCGGCGCGCCATCGCCATCGGCGTCGCGCGGGGGCTCCGCTACCTCCACGAGGAGTGCGAGCACAAGATCGTGCACTACGACATCAAGCCCGGCAACGTCCTGCTCGACGGCGGCATGACGCCCAAGGTGGCCGACTTCGGGCTGGCCCGGCTGGTGAACCGCGGCGACACGCACGTCTCCGTGTCCGGCATGCGCGGCACCCCCGGCTACGCCGCGCCGGAGACGTTGATGCAGTCCGGCGTGACGGAGAAGTGCGACGTGTACAGCTTCGGCATGCTCCTCCTCAAGATCGTCGGCCGGAGGAGGAACTTCGACGAGGCCGCGCCGGAGAGCCAGCAGTGGTGGCCGATGGAGGCGTGGGCCAGGTACGAGCGCGGCGAGTTGATGATGGTCGACGACGCCGCCGCCGCCATCAATCATCCGAGCGACGAGATCTGTAGTGGCAGCGACGGCGAGGCCGTGGTGACCGTGGCCGAGGCCGACGACGAGCGGCGGTGCAAGGAGGCGGTGGTGAGGATGTACCAGGTGGCGTTCTGGTGCGTGCAGCAGCGGCCGGAGGCGCGGCCGCCGATGGGCGCGGTGGTGAAGATGCTGGAGGGCGAGATGGACGTCGCGCCTCCGGTGAACCCGTTCCTGCATCTCATGGCGGCTCCGGCGCCGGTGCCGAATCCATGGGCGACGACGACGGCGAGCAGCGGAAACGCCGTCTCAGAAAACGTCGTTGTTTCTCACGGAAGTGACGGAATCGTCTCGCTTTGACTACTGAAATCTTTTGTCTGTGCGTGTGGGTCGCCACGACCTCGTTTCTTTGCATTCTACAAGTAGATTGTTTATC]


>consensus_5013#2 AGGCCGTCACTCTTCACATGCTTTCATCAAAACACCAAGATTACATCACCTGCTTCATGG CGTCGCCTGCCGTTTACGTGATTGCCACGATCATCTTCGTTGTGGCGTTCGCGGCGTTGC TGGTCAAGGTGTACCGGGGCGCCGAGAGCTGCGGCGCCGCGGTGGCCGCCGAGATGAAGG CGACGGCGCACTACGCCGTGGTGCCCGACGCCGCGATGCGGAGCGCGACGGTGGAGAGGT TCCTGTGGGAGATGGCGCACGAGAAGCCCATCCGGTTCACGCCGCGGCAGCTCGCCGGGT TCACGCGCGGCTACTCGGCGCGGCTCGGCGCCGGCGTCTTCGGGACGGTGTACGGCGGCG CGCTCCCCAACGGCCTCGCCGTGGCCGTCAAGGTGCTCCGCGGCGGCATGGACAGGAGGA GGTCCGAGGAGCAGTTCATGGCGGAGGTGGGCACCATCGGGAGGACGCACCACATCAACC TCGTCAGGCTGTTCGGCTTCTGCTACGACGCCGCCGTGCGCGCGCTGGTGTACGAGTACA TGGGCAACGGCGCGCTCGACGCCTACCTGTTCGACCTGAGCCGCGACGTCGGCGTCCCGG CGCGGCGCGCCATCGCCATCGGCGTCGCGCGGGGGCTCCGCTACCTCCACGAGGAGTGCG AGCACAAGATCGTGCACTACGACATCAAGCCCGGCAACGTCCTGCTCGACGGCGGCATGA CGCCCAAGGTGGCCGACTTCGGGCTGGCCCGGCTGGTGAACCGCGGCGACACGCACGTCT CCGTGTCCGGCATGCGCGGCACCCCCGGCTACGCCGCGCCGGAGACGTTGATGCAGTCCG GCGTGACGGAGAAGTGCGACGTGTACAGCTTCGGCATGCTCCTCCTCAAGATCGTCGGCC GGAGGAGGAACTTCGACGAGGCCGCGCCGGAGAGCCAGCAGTGGTGGCCGATGGAGGCGT GGGCCAGGTACGAGCGCGGCGAGTTGATGATGGTCGACGACGCCGCCGCCGCCATCAATC ATCCGAGCGACGAGATCTGTAGTGGCAGCGACGGCGAGGCCGTGGTGACCGTGGCCGAGG CCGACGACGAGCGGCGGTGCAAGGAGGCGGTGGTGAGGATGTACCAGGTGGCGTTCTGGT GCGTGCAGCAGCGGCCGGAGGCGCGGCCGCCGATGGGCGCGGTGGTGAAGATGCTGGAGG GCGAGATGGACGTCGCGCCTCCGGTGAACCCGTTCCTGCATCTCATGGCGGCTCCGGCGC CGGTGCCGAATCCATGGGCGACGACGACGGCGAGCAGCGGAAACGCCGTCTCAGAAAACG TCGTTGTTTCTCACGGAAGTGACGGAATCGTCTCGCTTTGACTACTGAAATCTTTTGTCT GTGCGTGTGGGTCGCCACGACCTCGTTTCTTTGCATTCTACAAGTAGATTGTTTATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5013#0      TCCCAACACGATAGCCCCTTGAGTGCTATAAATTCAGCCCCAGATTACAGCTGCATATGC 60
consensus_5013#2      ------------------------------------------------------------
consensus_5013#1      ------------------------------------------------------------
                                                                                  

consensus_5013#0      TACACGCATTGTTAGTTTGCATGCAAGCTTGATCGATCAGCTTCAGAGTTTGGATCACCA 120
consensus_5013#2      ------------------------------------------------------------
consensus_5013#1      ------------------------------------------------------------
                                                                                  

consensus_5013#0      AGAAGTTCAGAATCCTCCCAATTCGTTCTTCATTTGCAGCAGTAATTCATTATTCATCCA 180
consensus_5013#2      ------------------------------------------------------------
consensus_5013#1      ------------------------------------------------------------
                                                                                  

consensus_5013#0      CCAACATGTCTGCTAATCCCAACCAGTCGTTCGACGATTTCAACAAG----CAAGCCTCC 236
consensus_5013#2      --------------AGGCC--GTCACTCTTCACATGCTTTCATCAAAACACCAAGATTAC 44
consensus_5013#1      ------------------------------------------------------------
                                                                                  

consensus_5013#0      AGCAATTTCAACTCCTTCCTAGCCATCGTCGTCGTGCTTTCAGTGGTGAGCATTGCTGGA 296
consensus_5013#2      ATCACCTGCTTCATGGCGTCGCCTGCCGTTTACGTGATTGCCACGATCATCTTCGTTGTG 104
consensus_5013#1      ------------------------------------------------------------
                                                                                  

consensus_5013#0      TCAGTCGC--CATTGTTTACCTCG-TGTACAGATGTGTCAAGAAGAATGGCCTCCCGGCC 353
consensus_5013#2      GCGTTCGCGGCGTTGCTGGTCAAGGTGTACCGGGGCGCCGAGAGCTGCGGCGCCGCGGTG 164
consensus_5013#1      ------------------------------------------------------------
                                                                                  

consensus_5013#0      GTCAACATCAACACCAACCCGACGGCGGCGGCGGCGATGTACGCCGTGGTGCCCGACTCC 413
consensus_5013#2      GCCG---------CCGA---GATGAAGGCGACGGCGCACTACGCCGTGGTGCCCGACGCC 212
consensus_5013#1      -------GGAAACCCAAATCGGCGGCGGCGGCGACG-----CGTCGAGGAGG--AGCTCG 46
                                   ** *   *  *  **** ** **     ** ** ** *     * * 

consensus_5013#0      CAGATACGCGACGCCACCGTCGAGAGGTTTCTCAAAGAGATCGCCGGCGAGAAGCCCATC 473
consensus_5013#2      GCGATGCGGAGCGCGACGGTGGAGAGGTTCCTGTGGGAGATGGCGCACGAGAAGCCCATC 272
consensus_5013#1      TGGTGGCAGTGGCCGAGGACGGCGAGGTTCCTGTGGGAGATGGCGCACGAGAAGCCCATC 106
                        *   *      * *     * ****** **    ***** **   *************

consensus_5013#0      CGGTTCACGGCGCAGCAGCTGGCCGGATTCACGAACAACTACTCGGCCCGGCTCGGCGCC 533
consensus_5013#2      CGGTTCACGCCGCGGCAGCTCGCCGGGTTCACGCGCGGCTACTCGGCGCGGCTCGGCGCC 332
consensus_5013#1      CGGTTCACGCCGCGGCAGCTCGCCGGGTTCACGCGCGGCTACTCGGCGCGGCTCGGCGCC 166
                      ********* *** ****** ***** ******  *  ********* ************

consensus_5013#0      GGCGGCTTCGGCACCGTGTACAAGGGCATGCTCCCGAACGGCCTCACGGTCGCCGTGAAG 593
consensus_5013#2      GGCGTCTTCGGGACGGTGTACGGCGGCGCGCTCCCCAACGGCCTCGCCGTGGCCGTCAAG 392
consensus_5013#1      GGCGGCTTCGGGACGGTGTACGGCGGCGCGCTCCCCAACGGCCTCGGTGTGGCCGTCAAG 226
                      **** ****** ** ******   ***  ****** *********   ** ***** ***

consensus_5013#0      CGCCTCCACGTCGGCGGCCATGGCGACGGGTGGTCGACGTCGCAGGAGCAGTTCATGGCG 653
consensus_5013#2      GTGCTCCGCGGCGGC----ATG--GACAGGAGG---AGGTCCGAGGAGCAGTTCATGGCG 443
consensus_5013#1      GTGCTCCGCAGCGGC----ATG--GGCAGGAGG------TCCGAGGAGCAGTTCATGGCG 274
                         **** *  ****    ***  * * ** **      **  *****************

consensus_5013#0      GAGGTGGGCAGCGTCGGGAGGACTCACCACATCAACCTCGTCAGGCTGTTCGGCTTCTGC 713
consensus_5013#2      GAGGTGGGCACCATCGGGAGGACGCACCACATCAACCTCGTCAGGCTGTTCGGCTTCTGC 503
consensus_5013#1      GAGGTGGGCACCATCGGGAGGACGCACCACATCAACCTCGTCAGGCTGTTCGGCTTCTGC 334
                      ********** * ********** ************************************

consensus_5013#0      TTCGACGCCGACGTGCGCGCGCTGGTGTACGAGTACATGGACAACGGGGCGCTCGACGCC 773
consensus_5013#2      TACGACGCCGCCGTGCGCGCGCTGGTGTACGAGTACATGGGCAACGGCGCGCTCGACGCC 563
consensus_5013#1      TTCGACGCCGCCGTGCGCACGCTGGTGTACGAGTTCATGGGCGACGGCGCGCTTGATGCC 394
                      * ******** ******* *************** ***** * **** ***** ** ***

consensus_5013#0      TACCTGTTCGACCGGAGCCGCGCCGTCGCCGTC-GCGACG-CGGCGCGCCATCGCCGTCG 831
consensus_5013#2      TACCTGTTCGACCTGAGCCGCGACGTCGGCGTC-CCGGCG-CGGCGCGCCATCGCCATCG 621
consensus_5013#1      TACCTGTTCGACCGGACCCGCGCCGTCGGCGACAGCGACGGCCTCCGGTCTCCCCCGTCC 454
                      ************* ** ***** ***** ** *  ** ** *  *  * *  * ** ** 

consensus_5013#0      GTGTCGCGAGGGGGCTCCGCTACCTC----CACGAGGAGTGCCAGCACAAGATCGTGCAC 887
consensus_5013#2      GCGTCGCGCGGGGGCTCCGCTACCTC----CACGAGGAGTGCGAGCACAAGATCGTGCAC 677
consensus_5013#1      TCTTCGCTCTGGGCTGAGGCCGCCGTGAGTCAAAATCGGCGGAAACCCAA-ATCGGCGGC 513
                         ****   ***     **  **      **  *   * *  * * *** ****    *

consensus_5013#0      TACGACATCAAGCCCGGCAACGTCCTGCT-CGACGGCGGC--CTGACGCCCAAGGTGGC- 943
consensus_5013#2      TACGACATCAAGCCCGGCAACGTCCTGCT-CGACGGCGGC--ATGACGCCCAAGGTGGC- 733
consensus_5013#1      GGCAGCAACGCGTCGGGGAGGAGCTCGTGGTGGCAGTGGCCGAGGACGGCGAGGCTGGCG 573
                        *  ** *  * * ** *    *  *    * * * ***    **** * * * **** 

consensus_5013#0      -CGACTTCGGGCTGGC-GCGGCTG-GCGAGCCGCGGCGACACGCAC----GTCTCGGTGT 996
consensus_5013#2      -CGACTTCGGGCTGGC-CCGGCTG-GTGAACCGCGGCGACACGCAC----GTCTCCGTGT 786
consensus_5013#1      GTGATGTGCGCCTGGTTGCGGCGGAGCGGGCTGCGGAAGACCGCGGCGGAGTGGCCATGG 633
                        **  *  * ****   **** * * *  * ****     ***      **  *  ** 

consensus_5013#0      CCGGCATGCGCGGCACCCCGGGCTACGCCGCGCCGGAGATGTGGATGCAGGCGGGCGTGA 1056
consensus_5013#2      CCGGCATGCGCGGCACCCCCGGCTACGCCGCGCCGGAGACGTTGATGCAGTCCGGCGTGA 846
consensus_5013#1      AGGGAGCA-GCAGAACGACAAGCAAAAACTCGCCGCGGCAGCGGTGGC-----GAGGCGA 687
                        **     ** * **  *  ** *   * *****  *  *  *  **     *  * **

consensus_5013#0      CCGAGAAGTGCGACGTGTACAGCTTCGGCGTGCTCCTGTTCGAGATTGTCCGCCGGCGGC 1116
consensus_5013#2      CGGAGAAGTGCGACGTGTACAGCTTCGGCATGCTCCTCCTCAAGATCGTCGGCCGGAGGA 906
consensus_5013#1      TGGAAGGAGGAGAAGTTGGCGGTGGCGGCGGCGAGCTCATGGAAGGCGCGCGAGGAGGAG 747
                        **     * ** **   * *   ****      **  *  *    *   *  *  *  

consensus_5013#0      GGAACCTCGACGACGGCGGCGCGCCGGGGAGCCAGCA--GCAGTGGTTCCCGATGCTGGC 1174
consensus_5013#2      GGAACTTCGACGA-GGC--CGCGCCGGAGAGCCAGCA--GTGGTGG---CCGATGGAGGC 958
consensus_5013#1      AACGCATCGGGATCAGTGGCG-GCAGGTAGGCTCGCGAGGAAGTGAGCATAGATGGCGGA 806
                          * ***      *   ** ** **   **  **   *  ***      ****  ** 

consensus_5013#0      G-TGGAGCAAGCACGAG------------------GCCGGACACCTCGCCGAGGCCATCG 1215
consensus_5013#2      G-TGGGCCAGGTACGAGCGCGGCGAGTTGATGATGGTCGACGACGCCGCCGCCGCCATCA 1017
consensus_5013#1      GGCGGTGCCGGCGGGGGGATTGGAAGGCGGCGGCCGCAAGAAGAGCAGCGGCGAGGCGGG 866
                      *  **  *  *   * *                  *           ** *         

consensus_5013#0      AG------------------------------GGCTGCGACGCCATGG------------ 1233
consensus_5013#2      ATCATCCGAGCGACGAGATCTGTAGTGGCAGCGACGGCGAGGCCGTGGTGACCGTGGCCG 1077
consensus_5013#1      AGCAGGCTGGGGAGAGTGAGAGGCGCGCGACGGTCGGCATGGGGACAGCGCATA-----G 921
                      *                               * * **   *     *            

consensus_5013#0      ---------ACAAGCAGGAG---AGGGAGACGGTGGAGAGGATGTGCAAGGTGGCGTTCT 1281
consensus_5013#2      AGGCCGACGACGAGCGGCGGTGCAAGGAGGCGGTGGTGAGGATGTACCAGGTGGCGTTCT 1137
consensus_5013#1      GGAGTGGCGGCGCTCGGCCGGCAAGGGAGATGCCGCCTCCTGCTCCCGCATCGCCGTGCC 981
                                *   * *  *   * ****  *  *           *     * *** * 

consensus_5013#0      GGTGCGTGCAGCAGCAGCCGGAGGCGAGGCCGCCGATGAGCGCCGTGGTGAGGATGCTGG 1341
consensus_5013#2      GGTGCGTGCAGCAGCGGCCGGAGGCGCGGCCGCCGATGGGCGCGGTGGTGAAGATGCTGG 1197
consensus_5013#1      GCCATGTCCTCCTCCCAC--GGGCCGCCGCCGTGGATGGGAGTGGTGGCGCTCGGCCTCG 1039
                      *    ** *  *  *  *  * * **  ****  **** * *  **** *      ** *

consensus_5013#0      AAGGGGAGGTGGACATCGACGCGCCGCCGGTGAACCCGTTCCAGCATTTGGTCGCGTCGC 1401
consensus_5013#2      AGGGCGAGATGGACGT---CGCGCCTCCGGTGAACCCGTTCCTGCATCTCATGGCGGCTC 1254
consensus_5013#1      TCGTCGTCGTCGGCGCCTCCGAGCAAG-GATAGGGCCGCTGCCGCCGCCGTGCTCCCCGA 1098
                        *  *   * * *     ** **    * *    *** * * **         *  *  

consensus_5013#0      CGGCGGCTGCGCTTAG---GTGGACAAGCACTACAGATTCAGCTG-AAAGTGATAA-CTC 1456
consensus_5013#2      CGGCGCCGGTGCCGAATCCATGGGCGACGACGACGGCGAGCAGCG-GAAACGCCGT-CTC 1312
consensus_5013#1      TATGGATAGGGCCGCC-CCAAGCCCGAGCGCCGCCTCTCCTGCCTCGCCCCGCCGAGCTC 1157
                          *   * **         *  * *   *  *                 *     ***

consensus_5013#0      ATTGAG-ATCAGGGTCTCGTCAGTCTGCAGAGGTGATCATTCCAATTGG-------ATCA 1508
consensus_5013#2      AGAAAACGTCGTTGTTTC-TCACGGAAGTGACGGAATCGTCTCGCTTTG-------ACTA 1364
consensus_5013#1      CGAGCCGGCCACCGCCCT-TCACC--ACCGGCGTCCTCCTCCTCCTTCGCCGCCGCATCG 1214
                               *   *     ***       *  *   ** *     ** *       *   

consensus_5013#0      TTACATTGTTAAGAGCAGGTACAATAGCAGGCTA---TAATTCAGCTATAAACATATTTT 1565
consensus_5013#2      CTGAAATCTTTTGTCTGTGCGTGTGGGTCGCCAC---GACCTCGTTTCTTTGCATTCTAC 1421
consensus_5013#1      ACGGCTTGCCCCGCTGCTCCCTCCCGGCCGCCTCAGCGACGTCATCCCTGCGAGTGCGAG 1274
                            *     *             *  * *      *  **     *     *     

consensus_5013#0      AAATAGATAAAGGAAGAGTGAGAAGAGCAGTGGGTTACAGATCTGTAGCCAGCTGCAGCA 1625
consensus_5013#2      AAGTAGATTGTTTATC-------------------------------------------- 1437
consensus_5013#1      AGCAGAGCGAGAGGAAGGAAAGAGAAACAGAGAAAGAGAAAGGGGAAAGAGAGGGTGACG 1334
                      *                                                           

consensus_5013#0      CGAACTCTAAGACGTAATGTGTGTATGACAGGTAGGACTGGGTATTAATAGTATAGTAAG 1685
consensus_5013#2      ------------------------------------------------------------
consensus_5013#1      TGGA-TATATGACATGTGGGGCCCACGCTGACTCAGCCGCCACATAGACCAAAACCGGGG 1393
                                                                                  

consensus_5013#0      CAA--------------------------------------------------------- 1688
consensus_5013#2      ------------------------------------------------------------
consensus_5013#1      TCAAAACCACCGAGGGATTTTGGGTGACCAGTTTTGTATAGTTAGGGGACCTCGGTTGTC 1453
                                                                                  

consensus_5013#0      ------------------------------------------------------------
consensus_5013#2      ------------------------------------------------------------
consensus_5013#1      TGGTATTGCGGTTCAAGGACGTTTTCGTATCTCGGTGACAAGTTCAGGGACCTCCGGTGT 1513
                                                                                  

consensus_5013#0      --
consensus_5013#2      --
consensus_5013#1      AC 1515
                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)