These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 771 fasta sequence [GCCAAGCCCAAGCAACCGCCTCCTCATGCTCCTCCTCCGCCGCCGCCCCCGCCTCCGGTGGAGGGCAAGCCCAAGCCTCCTCCTCATGCGCCGCCGCCGCCGCCTCCGGAGGCCAAGAAGAGCTTCATGCGCCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTATATGCTTATGAGGACCTACCAAAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACTTCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCACCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATGCTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGGGAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGTTGATTTGGGCTTTTCAGCTATTGGTGCCTGTGTAAGTTCATCAGCAAAAAA] [+] EMBL AK059115 [GCCAAGCCCAAGCAACCGCCTCCTCATGCTCCTCCTCCGCCGCCGCCCCCGCCTCCGGTGGAGGGCAAGCCCAAGCCTCCTCCTCATGCGCCGCCGCCGCCGCCTCCGGAGGCCAAGAAGAGCTTCATGCGCCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTATATGCTTATGAGGACCTACCAAAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACTTCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCACCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATGCTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGGGAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATT ] [+] EMBL BI806929 [ GGCC AGAAGAGCTTCATGC CCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTATATGCTTATGAGGACCTACC AAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACTTCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCACCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATGCTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGGGAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGTTGATTTGGGCTTTTCAGCTATTGGTGCCTGTGTAAGTTCATCAGCAAAAAA] consensusID : consensus_5019#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [TATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGATTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCTTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGTTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF318297 [TATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGATTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCTTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGTTAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5019#0 GCCAAGCCCAAGCAACCGCCTCCTCATGCTCCTCCTCCGCCGCCGCCCCCGCCTCCGGTG 60 consensus_5019#1 ------------------------------------------------------------ consensus_5019#0 GAGGGCAAGCCCAAGCCTCCTCCTCATGCGCCGCCGCCGCCGCCTCCGGAGGCCAAGAAG 120 consensus_5019#1 ------------------------------------------------------------ consensus_5019#0 AGCTTCATGCGCCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTAT 180 consensus_5019#1 ------------------------------------------------------------ consensus_5019#0 ATGCTTATGAGGACCTACCAAAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACT 240 consensus_5019#1 ------------------------------------------------------------ consensus_5019#0 TCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCA 300 consensus_5019#1 ------------------------------------------------------------ consensus_5019#0 CCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATG 360 consensus_5019#1 ------------------------------------------------------------ consensus_5019#0 CTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGG 420 consensus_5019#1 ------------------------------------------------------------ consensus_5019#0 GAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGC 480 consensus_5019#1 -------------------------------------------------TATAAGATCGC 11 *********** consensus_5019#0 CAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTG 540 consensus_5019#1 CAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGATTGGGAACGGTG 71 ************************************************ *********** consensus_5019#0 CGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGG 600 consensus_5019#1 CGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGG 131 ************************************************************ consensus_5019#0 AAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGG 660 consensus_5019#1 AAAGACCTTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGG 191 ******* **************************************************** consensus_5019#0 GTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGT 720 consensus_5019#1 GTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGT 251 ************************************************************ consensus_5019#0 TGATTTGGGCTTTTCAGCTATTGGTGCCTGTGTAAGTTCATCAGCAAAAAA 771 consensus_5019#1 TAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 277 * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||