Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5019 cluster # 5019       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5019#0 length = 771 sequences # 2  
consensus_5019#1 length = 277 sequences # 1  

consensusID : consensus_5019#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 771
fasta sequence
                              [GCCAAGCCCAAGCAACCGCCTCCTCATGCTCCTCCTCCGCCGCCGCCCCCGCCTCCGGTGGAGGGCAAGCCCAAGCCTCCTCCTCATGCGCCGCCGCCGCCGCCTCCGGAGGCCAAGAAGAGCTTCATGCGCCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTATATGCTTATGAGGACCTACCAAAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACTTCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCACCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATGCTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGGGAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGTTGATTTGGGCTTTTCAGCTATTGGTGCCTGTGTAAGTTCATCAGCAAAAAA]

[+] EMBL AK059115             [GCCAAGCCCAAGCAACCGCCTCCTCATGCTCCTCCTCCGCCGCCGCCCCCGCCTCCGGTGGAGGGCAAGCCCAAGCCTCCTCCTCATGCGCCGCCGCCGCCGCCTCCGGAGGCCAAGAAGAGCTTCATGCGCCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTATATGCTTATGAGGACCTACCAAAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACTTCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCACCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATGCTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGGGAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATT                                                                                                                                       ]
[+] EMBL BI806929             [                                                                                                              GGCC AGAAGAGCTTCATGC CCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTATATGCTTATGAGGACCTACC AAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACTTCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCACCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATGCTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGGGAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGTTGATTTGGGCTTTTCAGCTATTGGTGCCTGTGTAAGTTCATCAGCAAAAAA]


>consensus_5019#0 GCCAAGCCCAAGCAACCGCCTCCTCATGCTCCTCCTCCGCCGCCGCCCCCGCCTCCGGTG GAGGGCAAGCCCAAGCCTCCTCCTCATGCGCCGCCGCCGCCGCCTCCGGAGGCCAAGAAG AGCTTCATGCGCCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTAT ATGCTTATGAGGACCTACCAAAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACT TCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCA CCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATG CTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGG GAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGC CAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTG CGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGG AAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGG GTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGT TGATTTGGGCTTTTCAGCTATTGGTGCCTGTGTAAGTTCATCAGCAAAAAA



consensusID : consensus_5019#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence
                              [TATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGATTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCTTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGTTAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF318297             [TATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGATTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCTTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGTTAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_5019#1 TATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGAT TGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAAT GATAGTTGTGGAAAGACCTTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATA GGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACT ATTATCAGTGTTAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5019#0      GCCAAGCCCAAGCAACCGCCTCCTCATGCTCCTCCTCCGCCGCCGCCCCCGCCTCCGGTG 60
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      GAGGGCAAGCCCAAGCCTCCTCCTCATGCGCCGCCGCCGCCGCCTCCGGAGGCCAAGAAG 120
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      AGCTTCATGCGCCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTAT 180
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      ATGCTTATGAGGACCTACCAAAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACT 240
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      TCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCA 300
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      CCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATG 360
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      CTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGG 420
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      GAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGC 480
consensus_5019#1      -------------------------------------------------TATAAGATCGC 11
                                                                       ***********

consensus_5019#0      CAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTG 540
consensus_5019#1      CAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGATTGGGAACGGTG 71
                      ************************************************ ***********

consensus_5019#0      CGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGG 600
consensus_5019#1      CGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGG 131
                      ************************************************************

consensus_5019#0      AAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGG 660
consensus_5019#1      AAAGACCTTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGG 191
                      ******* ****************************************************

consensus_5019#0      GTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGT 720
consensus_5019#1      GTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGT 251
                      ************************************************************

consensus_5019#0      TGATTTGGGCTTTTCAGCTATTGGTGCCTGTGTAAGTTCATCAGCAAAAAA 771
consensus_5019#1      TAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 277
                      * *            *   *                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)