These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1056 fasta sequence [TCTTCGCCGCCGCTCCCGTTCCCGCTCGCCGTCTCGCGATATCGGATCGAGGGTGGCCGGCTGCTACGACTCGCGCACGCGGCAGGCATGGCGACGAAGCGCAAGTGCCCCGCCAATGGCGACGACGGCGGCGTGGCCGACCTCGAGCCGGTAGCAGGTGGTTCCTTCGCCTCCCCGCCGCCGGAGAAGAAGGCCAAGTTGACCGTCGCCGTCGCCGTCGCCGTCGCGCCCTCCTCCTCCTCTTCTGCTACCACCGCTGCCGCGGGGGAGGCGACGGCCAAGCGCGAGCACGGAGGCTTCTTCGCCTTCGCGAGGCCCGAGAACAACACCAGGCTGAGCGTCGCCGTCGCGTCCTCCTCCTCTTCTGCATCCGCCGCCGCGGAGAAGGCGATGGCCAAGCTGACCGTCGCCGGCGTCGCGCCCTCCTCTTCTGCATCCGCCGCCGCCGCGGGGAAGGCGACGGCCAAGCGCGAGTACGGCGGCTTCTGCGCCTTCGCGAGGCCCGACGACAAAACCAGGTGGCGCGTCGCTGTCGCGTCGTCCGCCGCCGCCGCGGCGGACGCGTCGTATTCTTCTTCGTCGCCGGCGACGGGGGAGCAGCCGGAGGCGAACCGGTGCGCGACGTGCCGGAGGAAGGTGGGGCTGACGGGGTTCAAGTGCCGGTGCGGCGGCACGTTCTGCGGCGGCCACCGCTACGCCGACGAGCACGACTGCGGCTTCGACTACAAGAGCTCCGGGAGGGAGCTGATCGCCAAGCAGAATCCGGTCGTCGTCGCCGACAAGCTGGCCTTCAGGATTTGATCAAGAATCCTCAACCACTATCCATGAGGTCAAATCGAAGTAGCCGATCAAAGATCAATGATCTGTTCTTCAATCTTGTGGGAAGTTGAATCCTTGTTTGCAATGATCGATTTTCTGTGCTCAGCGCACAATTAATTTGATGTAATTTTCGTCAAAGAAAAGTTAGTTGTAGTTCGCTGTAACAGAGTCAGTTTAATTCAGTTGATGTATCTATTTGGATCGATTGATATGTGCAGAAGCAAAGTACAAGTCTTT] [+] EMBL AK108384 [TCTTCGCCGCCGCTCCCGTTCCCGCTCGCCGTCTCGCGATATCGGATCGAGGGTGGCCGGCTGCTACGACTCGCGCACGCGGCAGGCATGGCGACGAAGCGCAAGTGCCCCGCCAATGGCGACGACGGCGGCGTGGCCGACCTCGAGCCGGTAGCAGGTGGTTCCTTCGCCTCCCCGCCGCCGGAGAAGAAGGCCAAGTTGACCGTCGCCGTCGCCGTCGCCGTCGCGCCCTCCTCCTCCTCTTCTGCTACCACCGCTGCCGCGGGGGAGGCGACGGCCAAGCGCGAGCACGGAGGCTTCTTCGCCTTCGCGAGGCCCGAGAACAACACCAGGCTGAGCGTCGCCGTCGCGTCCTCCTCCTCTTCTGCATCCGCCGCCGCGGAGAAGGCGATGGCCAAGCTGACCGTCGCCGGCGTCGCGCCCTCCTCTTCTGCATCCGCCGCCGCCGCGGGGAAGGCGACGGCCAAGCGCGAGTACGGCGGCTTCTGCGCCTTCGCGAGGCCCGACGACAAAACCAGGTGGCGCGTCGCTGTCGCGTCGTCCGCCGCCGCCGCGGCGGACGCGTCGTATTCTTCTTCGTCGCCGGCGACGGGGGAGCAGCCGGAGGCGAACCGGTGCGCGACGTGCCGGAGGAAGGTGGGGCTGACGGGGTTCAAGTGCCGGTGCGGCGGCACGTTCTGCGGCGGCCACCGCTACGCCGACGAGCACGACTGCGGCTTCGACTACAAGAGCTCCGGGAGGGAGCTGATCGCCAAGCAGAATCCGGTCGTCGTCGCCGACAAGCTGGCCTTCAGGATTTGATCAAGAATCCTCAACCACTATCCATGAGGTCAAATCGAAGTAGCCGATCAAAGATCAATGATCTGTTCTTCAATCTTGTGGGAAGTTGAATCCTTGTTTGCAATGATCGATTTTCTGTGCTCAGCGCACAATTAATTTGATGTAATTTTCGTCAAAGAAAAGTTAGTTGTAGTTCGCTGTAACAGAGTCAGTTTAATTCAGTTGATGTATCTATTTGGATCGATTGATATGTGCAGAAGCAAAGTACAAGTCTTT] consensusID : consensus_5022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence [ACCCACCCTGTACCCGCCGCTCGATCGCCGCCGTTCTCGCCCGAAGAAGGAAAGCGCCATGGCGTCGATGAAGCGGAAGTGCCCCGATGACGAGACGGCCTGCGGCTCCGGCGCCGGCGCCGCCATGTGCGTCACCGGCTGCGGATTCTTCGGCTCCGAGGCCACCAACAACATGTGCTCCCGGTGCTACCGCGAGCACTCCGCGGACAACGACGCCGTGGAGGAGGCGGCGGCAGCCAACAGCGACCTCGAGCTGGTTGGCGTGGCGGAGACGACGACGAAGAAGGCCAGGATGAGCGCCGTCGTCCCCGTCGCCGTCGCGTCATCTTCATCGGCGGCGGCAGAGCAGCCGGCGGCGAAGGCTGCTACGGCGCCGAACCGGTGCGCGGCGTGCCGGAAGAAGGTGGGGCTGACGGGGTTCAAGTGCCGGTGCGGCGGCAACTTCTGTGGCGGCCACCGCCACGCCGACGCCCACGGCTGCGGCTTCGACTACAAGAGCGCCGGGAAGGAGCAGATCGCCAAGCAGAACCCGCTCGTCGTCGCCGACAAGCTGGCCACCCGGATTTGAGCTCTCCTCTCTCTCTTCCATGGAATCCAACAGCAGTCTGCAAAACCATCGACGAGCACAAGCAAACATTGAGTAGCAAGCTCAGTGATCTGTTCTGAAACATGTAAGATTGAATACTTGCATGTAATTTAGTATTTGTTTTCACTGAAGAAACATGTTCCCATTGACAATAATCTTTA] [+] EMBL AK108205 [ACCCACCCTGTACCCGCCGCTCGATCGCCGCCGTTCTCGCCCGAAGAAGGAAAGCGCCATGGCGTCGATGAAGCGGAAGTGCCCCGATGACGAGACGGCCTGCGGCTCCGGCGCCGGCGCCGCCATGTGCGTCACCGGCTGCGGATTCTTCGGCTCCGAGGCCACCAACAACATGTGCTCCCGGTGCTACCGCGAGCACTCCGCGGACAACGACGCCGTGGAGGAGGCGGCGGCAGCCAACAGCGACCTCGAGCTGGTTGGCGTGGCGGAGACGACGACGAAGAAGGCCAGGATGAGCGCCGTCGTCCCCGTCGCCGTCGCGTCATCTTCATCGGCGGCGGCAGAGCAGCCGGCGGCGAAGGCTGCTACGGCGCCGAACCGGTGCGCGGCGTGCCGGAAGAAGGTGGGGCTGACGGGGTTCAAGTGCCGGTGCGGCGGCAACTTCTGTGGCGGCCACCGCCACGCCGACGCCCACGGCTGCGGCTTCGACTACAAGAGCGCCGGGAAGGAGCAGATCGCCAAGCAGAACCCGCTCGTCGTCGCCGACAAGCTGGCCACCCGGATTTGAGCTCTCCTCTCTCTCTTCCATGGAATCCAACAGCAGTCTGCAAAACCATCGACGAGCACAAGCAAACATTGAGTAGCAAGCTCAGTGATCTGTTCTGAAACATGTAAGATTGAATACTTGCATGTAATTTAGTATTTGTTTTCACTGAAGAAACATGTTCCCATTGACAATAATCTTTA] consensusID : consensus_5022#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 155 fasta sequence [TCTTTTTTTTTTTTTTTTGGTTCATAAATAAAGATTATTGTCATTGGGAACATGTTTCTTCAGTGAAAACAAATACGAAATTACATGCAAGTATTCAATCTTACATGTTTCAAAACAGATCACTGAGCTTGCTACTCTATGACCCCTTGTCTCGT] [+] EMBL CA760529 [TCTTTTTTTTTTTTTTTTGGTTCATAAATAAAGATTATTGTCATTGGGAACATGTTTCTTCAGTGAAAACAAATACGAAATTACATGCAAGTATTCAATCTTACATGTTTCAAAACAGATCACTGAGCTTGCTACTCTATGACCCCTTGTCTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5022#0 TCTTCGCCGCCGCTCCCGTTCCCGCTCGCCGTCTCGCGATATCGGATCGAGGGTGGCCGG 60 consensus_5022#1 ------------------------------------------------------------ consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 CTGCTACGACTCGCGCACGCGGCAGGCATGGCGACGAAGCGCAAGTGCCCCGCCAATGGC 120 consensus_5022#1 ------------------------------------------------------------ consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 GACGACGGCGGCGTGGCCGACCTCGAGCCGGTAGCAGGTGGTTCCTTCGCCTCCCCGCCG 180 consensus_5022#1 ------------------------------------------------------------ consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 CCGGAGAAGAAGGCCAAGTTGACCGTCGCCGTCGCCGTCGCCGTCGCGCCCTCCTCCTCC 240 consensus_5022#1 -------------------------------------------ACCCACCCTGTACCCGC 17 consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 TCTTCTGCTACCACCGCTGCCGCGGGGGAGGCGACGGCCAAGCGCGAGCACGGAGGCTTC 300 consensus_5022#1 CGCTCGATCGCCGCCGTTCTCGCCCGAAGAAGGAAAGCGCCATGGCGTCGATGAAGCGGA 77 consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 TTCGCCTTCGCGAGGCCCGAGAACAACACCAGGCTGAGCGTCGCCGTCGC-GTCCTCCTC 359 consensus_5022#1 AGTGCCCCGATGA----CGAGACGGCCTGCGGCTCCGGCGCCGGCGCCGCCATGTGCGTC 133 consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 CTCTTCTGCATCCGCCGCCGCGGAGAAGGCGATGGCCAAGCTGACCGTCGCCGGCGTCGC 419 consensus_5022#1 ACCGGCTGCGGATTCTTCGGCTCCGAGGCCACCAACAACATGTGCTCCCGGTGCTACCGC 193 consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 GCCCTCCTCTTCTGCATCCGCCGCCGCCGCGGGGAAGGCGACGGCCAAGCGCGAGTACGG 479 consensus_5022#1 GAGCACTCCGCGGACAAC-GACGCCGTGGAGGAGGCGGCGGCAGCCAACAGCGACCTCGA 252 consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 CGGCTTCTGCGCCTTCGCGAGGCCCGACGACAAAACCAGGTGGCGCGTCGCTGTCGCGTC 539 consensus_5022#1 GCTGGTTGGCGTGGCGGAGACGACGACGAAGAAGGCCAGGATGAGCGCCGTCGTC----- 307 consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 GTCCGCCGCCGCCGCGGCGGACGCGTCGTATTCTTCTTCGTCGCCGGCGACGGGGGAGCA 599 consensus_5022#1 -CCCGTCGCCGTCGCGTCATCTTCATCGGCGGCGGCAGAGCAGCCGGCGGCGAAGGCTGC 366 consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 GCCGGAGGCGAACCGGTGCGCGACGTGCCGGAGGAAGGTGGGGCTGACGGGGTTCAAGTG 659 consensus_5022#1 TACGGCGCCGAACCGGTGCGCGGCGTGCCGGAAGAAGGTGGGGCTGACGGGGTTCAAGTG 426 consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 CCGGTGCGGCGGCACGTTCTGCGGCGGCCACCGCTACGCCGACGAGCACGACTGCGGCTT 719 consensus_5022#1 CCGGTGCGGCGGCAACTTCTGTGGCGGCCACCGCCACGCCGACGCCCACGGCTGCGGCTT 486 consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 CGACTACAAGAGCTCCGGGAGGGAGCTGATCGCCAAGCAGAATCCGGTCGTCGTCGCCGA 779 consensus_5022#1 CGACTACAAGAGCGCCGGGAAGGAGCAGATCGCCAAGCAGAACCCGCTCGTCGTCGCCGA 546 consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 CAAGCTGGCCTTCAGGATTTGATCAAGAATCCTCAACCACTATCCATGAGGTCAAATCGA 839 consensus_5022#1 CAAGCTGGCCACCCGGATTTGAGCTC---TCCTCTCTCTCT-TCCATGGAATCCAACAGC 602 consensus_5022#2 ----------------------TCTTTTTTTTTTTTTTTTGGTTCATAAATAAAGATTAT 38 * * * * *** * consensus_5022#0 AGTAGCCGATCA-AAGATCAATGATC-TGTTCTTCAATCTTGTGGGAAGTTGAAT--CCT 895 consensus_5022#1 AGT--CTGCAAA-ACCATCGACGAGCACAAGCAAACATTGAGTAGCAAGCTCAGTGATCT 659 consensus_5022#2 TGTCATTGGGAACATGTTTCTTCAGTGAAAACAAATACGAAATTACATGC-AAGTATTCA 97 ** * * * * * * * * * * * * * consensus_5022#0 TGTTTGCAATGATCGATTTTCTGTGCTCAGCGCACAATTAATTTGATGTAATTTTCGTCA 955 consensus_5022#1 GTTCTGAAACATGTAAGATTGAATACTT-GCATGTAATTTAGTATTTGT---TTTCACTG 715 consensus_5022#2 ATCTTACATGTTTCAAAACAGATCACTGAGCTTGCTACTCTATGACCCCTTGTCTCGT-- 155 * * * ** ** * * * * ** consensus_5022#0 AAGAAAAGTTAGTTGTAGTTCGCTGTAACAGAGTCAGTTTAATTCAGTTGATGTATCTAT 1015 consensus_5022#1 AAGAAACAT--GTTCCCATTGACAATAATC--TTTA------------------------ 747 consensus_5022#2 ------------------------------------------------------------ consensus_5022#0 TTGGATCGATTGATATGTGCAGAAGCAAAGTACAAGTCTTT 1056 consensus_5022#1 ----------------------------------------- consensus_5022#2 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||