cluster # 5024

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Oryza sativa
cluster # 5024 cluster # 5024 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5024#0 length = 1287 sequences # 3
consensusID : consensus_5024#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1287
fasta sequence
                              [CCCGGCGCGCCCTTTCCCCTTCCCCTTCCCGCGCCGGCGTGCTCCCTCCCTTCCCCGCAAAACCCTCCAAAACCCTCTCGAATTCCGGCCCATTCCCCCCTCCCTCTCCAACCCTTCCACCCCATGCCCCACCCCTCCGCCGCCGCGATGCTCCCCTCGCCTTCCTCCCTCCTCCGCCTCCTCCGCCGCCCACACCCTCGCCTCCTCCCCCCGCCGCCCCCGCTCCTCACCCGCTTCCTCTCCTCTTCCTCCCCCGGCGACGCCGCCGGATGGGCCTCCTACGACCCGCTGACCGACAGCCTCGCCCCACCGGCGGCAGCCGCCGCCGCGTCCGACTCGGAGGCCCCCGCGGAGGGCGAGGCTTGGGGCGTGTTCGACGCCGTGACCGGCCGCATCGTCATGAAGGAGCACCCGCCCTACTCCCAGCCGCCGCCGCCCGGCCCCGACGAGGAGAGGTCCAAGGTGGGGAGGAGGAGGAGCGCTGGGGTGAAGGACGAGGCGAGGTGGTCGTCGGTGGCCGCCGTGGGGAAGGCCCGCGGCAAGGCGGGGAAGGAGAGGGCCTCGTACGTGTGCGGCAACTGCGGGGAGGGCTTCTCGCAGTGGTGGGGCACGTGCCGCCACTGCGAGGCGATGGGGACCCTGACCAAGTACGTCCCGGGCTCTGATCCTGGTGCCTCCGTGGGGTCACACCATGCCTTCCGGTCGTGGATTCCGCAGAAGAGCAAGGAGATGGTGCCCCAGAGCCTTCAGCAAGTGACCAAGGGAGTTGATCAGTCCGAGTGGCGAATACCGCTGTCCGGGAACTTCGGAATGGAGATTGCTCGAGTGCTTGGGGGTGGGGTTGTTCCTGGGTCCTTGATTCTAGTAGGTGGGGATCCAGGTGTAGGAAAAAGTTCATTGATATTACAGCTTGCTTCTATCATGTCCGAGAATATTGGTGCTGGGGAGTCTTCTGCTATCGTATATGTGTCTGGCGAGGAGAGCATTGAGCAAATTGGAAACAGGGCTGATCG-GATGAGTATCAAGTCTA-GAAAT-TTGTACTTGTATTCTAGTACAGATATCGAGGATATCTTGGACAAAATCCAACCATTATCTCCTA-GGGCACTCATTATTGATTCAATTCAGACAGTTTATCTAAGAGGATTTGCTGGAAGTGCTGGGAATATGACTCAGGTGAAGGAATGCACCTCTGCGCTGTTAAGATTTGCAAAATTGACAAATATTCCTGTTATCTTGATTGGACATGTTACAAAAACTGGTGATATTGCTGGTCCCCGTTTGTTAGAG]

[+] EMBL AK102866             [CCCGGCGCGCCCTTTCCCCTTCCCCTTCCCGCGCCGGCGTGCTCCCTCCCTTCCCCGCAAAACCCTCCAAAACCCTCTCGAATTCCGGCCCATTCCCCCCTCCCTCTCCAACCCTTCCACCCCATGCCCCACCCCTCCGCCGCCGCGATGCTCCCCTCGCCTTCCTCCCTCCTCCGCCTCCTCCGCCGCCCACACCCTCGCCTCCTCCCCCCGCCGCCCCCGCTCCTCACCCGCTTCCTCTCCTCTTCCTCCCCCGGCGACGCCGCCGGATGGGCCTCCTACGACCCGCTGACCGACAGCCTCGCCCCACCGGCGGCAGCCGCCGCCGCGTCCGACTCGGAGGCCCCCGCGGAGGGCGAGGCTTGGGGCGTGTTCGACGCCGTGACCGGCCGCATCGTCATGAAGGAGCACCCGCCCTACTCCCAGCCGCCGCCGCCCGGCCCCGACGAGGAGAGGTCCAAGGTGGGGAGGAGGAGGAGCGCTGGGGTGAAGGACGAGGCGAGGTGGTCGTCGGTGGCCGCCGTGGGGAAGGCCCGCGGCAAGGCGGGGAAGGAGAGGGCCTCGTACGTGTGCGGCAACTGCGGGGAGGGCTTCTCGCAGTGGTGGGGCACGTGCCGCCACTGCGAGGCGATGGGGACCCTGACCAAGTACGTCCCGGGCTCTGATCCTGGTGCCTCCGTGGGGTCACACCATGCCTTCCGGTCGTGGATTCCGCAGAAGAGCAAGGAGATGGTGCCCCAGAGCCTTCAGCAAGTGACCAAGGGAGTTGATCAGTCCGAGTGGCGAATACCGCTGTCCGGGAACTTCGGAATGGAGATTGCTCGAGTGCTTGGGGGTGGGGTTGTTCCTGGGTCCTTGATTCTAGTAGGTGGGGATCCAGGTGTAGGAAAAAGTTCATTGATATTACAGCTTGCTTCTATCATGTCCGAGAATATTGGTGCTGGGGAGTCTTCTGCTATCGTATATGTGTCTGGCGAGGAGAGCATTGAGCAAATTGGAAACAGGGCTGATCG GATGAGTATCAAGTCTA GAAAT TTGTACTTGTATTCTAGTACAGATATCGAGGATATCTTGGACAAAATCCAACCATTATCTCCTA GGGCACTCATTATTGATTCAATTCAGACAGTTTATCTAAGAGGATTTGCTGGAAGTGCTGGGAATATGACTCAGGTGAAGGAATGCACCTCTGCGCTGTTAAGATTTGCAAAATTGACAAATATTCCTGTTATCTTGATTGGACATGTTACAAAAACTGGTGATATTGCTGGTCCCCGTTTGTTAGAG]
[+] EMBL AU065522             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAGATTGCTCGAGTNCTTANGGGTGGGGTTGTTCCTNGGTCCTTGATTCTAGTAGGTGGGGATCCAGGTGTAGGAAAAAGTTCATTGATATTACAGCTTGCTTCTATCATGTCCGAGAATATTGGTGCTGGGGAGTCTTCTGCTATCGTATATNTGTCTGGCGAGGAGAGCATTGAGCAAATTGGAAACAGGGCTGATCG GATGAGTATCAAGTCTA GAAAT TTGTACTTGTATTCTAGTACAGATATCGAGGATATCTTGGACAAAATCCAACCATTATCTCCTAGGGGCACTCATTATTGATTCAATTCAGACAGTTTATCTAAGAGGATTTGCTGGAAGTGCT                                                                                                                                 ]
[+] EMBL OS1372A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAGATTGCTCGAGTGCTTGGGGGTGGGGTTGTTCCTGGGTCCTTGATTCTAGTAGGTGGGGATCCAGGTGTAGGAAAANGTTCATTGATATTACAGCTTGCTTCTATCATGTCCGAGAATATTGGTGCTGGGGAGTCTTCTGCTATCGTATATGTNTCTGGCGAGGAGAGCATTGAGCAAATTGGAAACAGGGCTGATCGNAATGAGTATCAAGTCTAGGAAATNTNNTACTTGTATTCTAGNACAGATATCGA                                                                                                                                                                                                                                ]




>consensus_5024#0
CCCGGCGCGCCCTTTCCCCTTCCCCTTCCCGCGCCGGCGTGCTCCCTCCCTTCCCCGCAA
AACCCTCCAAAACCCTCTCGAATTCCGGCCCATTCCCCCCTCCCTCTCCAACCCTTCCAC
CCCATGCCCCACCCCTCCGCCGCCGCGATGCTCCCCTCGCCTTCCTCCCTCCTCCGCCTC
CTCCGCCGCCCACACCCTCGCCTCCTCCCCCCGCCGCCCCCGCTCCTCACCCGCTTCCTC
TCCTCTTCCTCCCCCGGCGACGCCGCCGGATGGGCCTCCTACGACCCGCTGACCGACAGC
CTCGCCCCACCGGCGGCAGCCGCCGCCGCGTCCGACTCGGAGGCCCCCGCGGAGGGCGAG
GCTTGGGGCGTGTTCGACGCCGTGACCGGCCGCATCGTCATGAAGGAGCACCCGCCCTAC
TCCCAGCCGCCGCCGCCCGGCCCCGACGAGGAGAGGTCCAAGGTGGGGAGGAGGAGGAGC
GCTGGGGTGAAGGACGAGGCGAGGTGGTCGTCGGTGGCCGCCGTGGGGAAGGCCCGCGGC
AAGGCGGGGAAGGAGAGGGCCTCGTACGTGTGCGGCAACTGCGGGGAGGGCTTCTCGCAG
TGGTGGGGCACGTGCCGCCACTGCGAGGCGATGGGGACCCTGACCAAGTACGTCCCGGGC
TCTGATCCTGGTGCCTCCGTGGGGTCACACCATGCCTTCCGGTCGTGGATTCCGCAGAAG
AGCAAGGAGATGGTGCCCCAGAGCCTTCAGCAAGTGACCAAGGGAGTTGATCAGTCCGAG
TGGCGAATACCGCTGTCCGGGAACTTCGGAATGGAGATTGCTCGAGTGCTTGGGGGTGGG
GTTGTTCCTGGGTCCTTGATTCTAGTAGGTGGGGATCCAGGTGTAGGAAAAAGTTCATTG
ATATTACAGCTTGCTTCTATCATGTCCGAGAATATTGGTGCTGGGGAGTCTTCTGCTATC
GTATATGTGTCTGGCGAGGAGAGCATTGAGCAAATTGGAAACAGGGCTGATCGGATGAGT
ATCAAGTCTAGAAATTTGTACTTGTATTCTAGTACAGATATCGAGGATATCTTGGACAAA
ATCCAACCATTATCTCCTAGGGCACTCATTATTGATTCAATTCAGACAGTTTATCTAAGA
GGATTTGCTGGAAGTGCTGGGAATATGACTCAGGTGAAGGAATGCACCTCTGCGCTGTTA
AGATTTGCAAAATTGACAAATATTCCTGTTATCTTGATTGGACATGTTACAAAAACTGGT
GATATTGCTGGTCCCCGTTTGTTAGAG
clustalw multiple alignements is not computed in this case