These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 453 fasta sequence [GTACACAGTCACAGACGCAAACCCCCGCCGACCTCGCCACCCTCAAGAACTCCATTCGCAGC-GCCGCCCACACCCCGGAAGCCCTCGCCGACCTCTTCATCTCCGGCCTCTCCCACCCGGCCTTCCTCGCCGACCGCCCCATCTTTACCCTCTCCGTCCACCGCCTCGCCTCTGCCGGCCGCCGCGACCTCGTCG-CTCCATCCTCTCCTCCTCCCTCACCTCCCTCCCCGCGGCCCACCCCTCCGAGGGCTTCCTCATCCGCCTCATCTTCCTCTACTTCGGCGGCGGAATGCCCGACCANTTCCTCTCCACCTTCCGCATCGTCACCCCGCCCTCCGACCGCGCCCTCTCCGNTCTCCTCTCCGCCTACCACGACAACCGCCTCTACGACCGCGCCATCCAAGCCTTCCGCACTCTCCCCGCCGAGCTCGGCATCAAGCCCAGCGTCGTCTC] [+] EMBL C27087 [GTACACAGTCACAGACGCAAACCCCCGCCGACCTCGCCACCCTCAAGAACTCCATTCGCAGC GCCGCCCACACCCCGGAAGCCCTCGCCGACCTCTTCATCTCCGGCCTCTCCCACCCGGCCTTCCTCGCCGACCGCCCCATCTTTACCCTCTCCGTCCACCGCCTCGCCTCTGCCGGCCGCCGCGACCTCGTCG CTCCATCCTCTCCTCCTCCCTCACCTCCCTCCCCGCGGCCCACCCCTCCGAGGGCTTCCTCATCCGCCTCATCTTCCTCTACTTCGGCGGCGGAATGCCCGACCANTTCC ] [+] EMBL AU166746 [ GACCTCGCCACCCTCAAGAACTCCATTCGCAGCAGCCGCCCACACCCCGGAAGCCCTCGCCGACCTCTTCATCTCCGGCCTCTCCCACCCGGCCTTCCTCGCCGACCGCCCCATCTTTACCCTCTCCGTCCACCGCCTCGCCTCTGCCGGCCGCCGCGACCTCGTCGCCTCCATCCTCTCCTCCTCCCTCACCTCCCTCCCCGCGCCCCACCCCTCCGAGGGCTTCCTCATCCGCCTCATCTCCCTCTACTCCGCCGCCGGCATGCCCGACCACTCCCTCTCCACCTTCCGCATCGTCACCCCGCCCTCCGACCGCGCCCTCTCCGNTCTCCTCTCCGCCTACCACGACAACCGCCTCTACGACCGCGCCATCCAAGCCTTCCGCACTCTCCCCGCCGAGCTCGGCATCAAGCCCAGCGTCGTCTC] consensusID : consensus_5027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [GCCGCCGCCCTTCGCCGGAGCCTCGCTGCTGGCCCCGCCCCGGCCCTCCTCCTCCGCCGCCAACTCCTCATGCGCTTCCTCTCCACCCAGACACAGTCACAGACGCAAACCCCCGCCGACCTCGCCACCCTCAAGAACTCCATTCGCAGCGCCGCCCACACCCCGGAAGCCCTCGCCGACCTCTTCATCTCCGGCCTTTNCCACCCGGCCTTTCTCGCCGACCGGCCCATCTTTACCCTTTTCGTCACCGGCTNGGCTTTGGCGGGCGGCGGGACCTTGTNGGCTTCATTCTTTTCTTCTTCCTTAACTTCCTTCCCGGGGCCCAACCCTTCGAGGGGTTTCTTATTCGGCTTATTTTCCTTTANTTCGGCGGCGGGATGGCCGAACANTTCCTTTTCAACNTTCGGATTGGGAACCCGGCCTTCGA] [+] EMBL AU181623 [GCCGCCGCCCTTCGCCGGAGCCTCGCTGCTGGCCCCGCCCCGGCCCTCCTCCTCCGCCGCCAACTCCTCATGCGCTTCCTCTCCACCCAGACACAGTCACAGACGCAAACCCCCGCCGACCTCGCCACCCTCAAGAACTCCATTCGCAGCGCCGCCCACACCCCGGAAGCCCTCGCCGACCTCTTCATCTCCGGCCTTTNCCACCCGGCCTTTCTCGCCGACCGGCCCATCTTTACCCTTTTCGTCACCGGCTNGGCTTTGGCGGGCGGCGGGACCTTGTNGGCTTCATTCTTTTCTTCTTCCTTAACTTCCTTCCCGGGGCCCAACCCTTCGAGGGGTTTCTTATTCGGCTTATTTTCCTTTANTTCGGCGGCGGGATGGCCGAACANTTCCTTTTCAACNTTCGGATTGGGAACCCGGCCTTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5027#0 ------------------------------------------------------------ consensus_5027#1 GCCGCCGCCCTTCGCCGGAGCCTCGCTGCTGGCCCCGCCCCGGCCCTCCTCCTCCGCCGC 60 consensus_5027#0 ----------------------------GTACACAGTCACAGACGCAAACCCCCGCCGAC 32 consensus_5027#1 CAACTCCTCATGCGCTTCCTCTCCACCCAGACACAGTCACAGACGCAAACCCCCGCCGAC 120 ****************************** consensus_5027#0 CTCGCCACCCTCAAGAACTCCATTCGCAGCGCCGCCCACACCCCGGAAGCCCTCGCCGAC 92 consensus_5027#1 CTCGCCACCCTCAAGAACTCCATTCGCAGCGCCGCCCACACCCCGGAAGCCCTCGCCGAC 180 ************************************************************ consensus_5027#0 CTCTTCATCTCCGGCCTCTCCCACCCGGCCTTCCTCGCCGACCGCCCCATCTTTACCCTC 152 consensus_5027#1 CTCTTCATCTCCGGCCTTTNCCACCCGGCCTTTCTCGCCGACCGGCCCATCTTTACCCTT 240 ***************** * ************ *********** ************** consensus_5027#0 TCCGTCCACCGCCTCGCCTCTGCCGGCCGCCGCGACCTCGTCG-CTCCATCCTCTCCTCC 211 consensus_5027#1 TTCGTC-ACCGGCTNGGCTTTGGCGGGCGGCGGGACCTTGTNGGCTTCATTCTTTTCTTC 299 * **** **** ** * ** ** *** ** ** ***** ** * ** *** ** * ** * consensus_5027#0 TCCCTCACCTCCCTCCCCGCGGCCCACCCCTCCGAGGGCTTCCTCATCCGCCTCATCTTC 271 consensus_5027#1 TTCCTTAACTTCCTTCCCGGGGCCCAACCCTTCGAGGGGTTTCTTATTCGGCTTATTTTC 359 * *** * ** *** **** ****** **** ****** ** ** ** ** ** ** *** consensus_5027#0 CTCTACTTCGGCGGCGGAATGCCCGACCANTTCCTCTCCACCTTCCGCATCGTCACCCCG 331 consensus_5027#1 CTTTANTTCGGCGGCGGGATGGCCGAACANTTCCTTTTCAACNTTCGGATTGGGAACCCG 419 ** ** *********** *** **** ******** * ** * * ** ** * * **** consensus_5027#0 CCCTCCGACCGCGCCCTCTCCGNTCTCCTCTCCGCCTACCACGACAACCGCCTCTACGAC 391 consensus_5027#1 GCCTTCGA---------------------------------------------------- 427 *** *** consensus_5027#0 CGCGCCATCCAAGCCTTCCGCACTCTCCCCGCCGAGCTCGGCATCAAGCCCAGCGTCGTC 451 consensus_5027#1 ------------------------------------------------------------ consensus_5027#0 TC 453 consensus_5027#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||