cluster # 5036

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Oryza sativa
cluster # 5036 cluster # 5036 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5036#0 length = 519 sequences # 2

consensus_5036#1 length = 385 sequences # 1

consensusID : consensus_5036#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 519
fasta sequence

                              [CCTTATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCTTTCTCATCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAATGTTGTACTTGATACTTCGATGGTGTTTCATATTTTTATTTACTAGTGAGTGTGCACGTGCAAGGCACGTTAACATATATTGAATGGAGTAA]

[+] EMBL CF335952             [CCTTATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCTTTCTCATCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAATGTTGTACTTGATACTTCGATGGTGTTTCATATTTTTATTTACTAGTGAGTGTGCACGTGCAAGGCACGTTAACATATATTGAATGGAGTAA]
[+] EMBL CF334264             [    ATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCATTCTCATCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCAATGT TATGGATTTTTTTGGGTTTGGATTGAAATGTTG                                                                                       ]




>consensus_5036#0
CCTTATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCTTTCTCA
TCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAG
GCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCG
GGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTC
CCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAG
TTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGA
CTGGTACAATTTTGAGTTTTTGATGTTTCAGCCAATGTATATGGATTTTTTTGGGTTTGG
ATTGAAATGTTGTACTTGATACTTCGATGGTGTTTCATATTTTTATTTACTAGTGAGTGT
GCACGTGCAAGGCACGTTAACATATATTGAATGGAGTAA

consensusID : consensus_5036#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [CTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAATGTTGTACTTGATAAAAAAAAAAAA]

[-] EMBL CF334263             [CTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAATGTTGTACTTGATAAAAAAAAAAAA]




>consensus_5036#1
CTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTT
GGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCA
ACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTG
CCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTG
TCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACA
ATTTTGAGTTTTTGATGTTTCAGCCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAA
TGTTGTACTTGATAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5036#0      CCTTATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCTTTCTCA 60
consensus_5036#1      ------------------------------------------------------------
                                                                                  

consensus_5036#0      TCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAG 120
consensus_5036#1      --------CTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAG 52
                              ****************************************************

consensus_5036#0      GCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCG 180
consensus_5036#1      GCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCG 112
                      ************************************************************

consensus_5036#0      GGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTC 240
consensus_5036#1      GGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTC 172
                      ************************************************************

consensus_5036#0      CCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAG 300
consensus_5036#1      CCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAG 232
                      ************************************************************

consensus_5036#0      TTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGA 360
consensus_5036#1      TTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGA 292
                      ************************************************************

consensus_5036#0      CTGGTACAATTTTGAGTTTTTGATGTTTCAGCC-AATGTATATGGATTTTTTTGGGTTTG 419
consensus_5036#1      CTGGTACAATTTTGAGTTTTTGATGTTTCAGCCCAATGTATATGGATTTTTTTGGGTTTG 352
                      ********************************* **************************

consensus_5036#0      GATTGAAATGTTGTACTTGATACTTCGATGGTGTTTCATATTTTTATTTACTAGTGAGTG 479
consensus_5036#1      GATTGAAATGTTGTACTTGATAAAAAAAAAAAA--------------------------- 385
                      **********************     *                                

consensus_5036#0      TGCACGTGCAAGGCACGTTAACATATATTGAATGGAGTAA 519
consensus_5036#1      ----------------------------------------