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Oryza sativa
cluster # 5036 cluster # 5036       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5036#0 length = 519 sequences # 2  
consensus_5036#1 length = 385 sequences # 1  

consensusID : consensus_5036#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 519
fasta sequence
                              [CCTTATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCTTTCTCATCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAATGTTGTACTTGATACTTCGATGGTGTTTCATATTTTTATTTACTAGTGAGTGTGCACGTGCAAGGCACGTTAACATATATTGAATGGAGTAA]

[+] EMBL CF335952             [CCTTATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCTTTCTCATCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAATGTTGTACTTGATACTTCGATGGTGTTTCATATTTTTATTTACTAGTGAGTGTGCACGTGCAAGGCACGTTAACATATATTGAATGGAGTAA]
[+] EMBL CF334264             [    ATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCATTCTCATCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCAATGT TATGGATTTTTTTGGGTTTGGATTGAAATGTTG                                                                                       ]


>consensus_5036#0 CCTTATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCTTTCTCA TCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAG GCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCG GGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTC CCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAG TTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGA CTGGTACAATTTTGAGTTTTTGATGTTTCAGCCAATGTATATGGATTTTTTTGGGTTTGG ATTGAAATGTTGTACTTGATACTTCGATGGTGTTTCATATTTTTATTTACTAGTGAGTGT GCACGTGCAAGGCACGTTAACATATATTGAATGGAGTAA



consensusID : consensus_5036#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence
                              [CTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAATGTTGTACTTGATAAAAAAAAAAAA]

[-] EMBL CF334263             [CTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAATGTTGTACTTGATAAAAAAAAAAAA]


>consensus_5036#1 CTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTT GGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCA ACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTG CCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTG TCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACA ATTTTGAGTTTTTGATGTTTCAGCCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAA TGTTGTACTTGATAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5036#0      CCTTATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCTTTCTCA 60
consensus_5036#1      ------------------------------------------------------------
                                                                                  

consensus_5036#0      TCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAG 120
consensus_5036#1      --------CTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAG 52
                              ****************************************************

consensus_5036#0      GCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCG 180
consensus_5036#1      GCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCG 112
                      ************************************************************

consensus_5036#0      GGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTC 240
consensus_5036#1      GGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTC 172
                      ************************************************************

consensus_5036#0      CCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAG 300
consensus_5036#1      CCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAG 232
                      ************************************************************

consensus_5036#0      TTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGA 360
consensus_5036#1      TTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGA 292
                      ************************************************************

consensus_5036#0      CTGGTACAATTTTGAGTTTTTGATGTTTCAGCC-AATGTATATGGATTTTTTTGGGTTTG 419
consensus_5036#1      CTGGTACAATTTTGAGTTTTTGATGTTTCAGCCCAATGTATATGGATTTTTTTGGGTTTG 352
                      ********************************* **************************

consensus_5036#0      GATTGAAATGTTGTACTTGATACTTCGATGGTGTTTCATATTTTTATTTACTAGTGAGTG 479
consensus_5036#1      GATTGAAATGTTGTACTTGATAAAAAAAAAAAA--------------------------- 385
                      **********************     *                                

consensus_5036#0      TGCACGTGCAAGGCACGTTAACATATATTGAATGGAGTAA 519
consensus_5036#1      ----------------------------------------
                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)