These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1303 fasta sequence [GCGCGCGTCCAACGAGCGCCACTCCAGCCATGGCGGTCCACCCGCTGCTCCGCCTTCTCCTCCTCCGGCCACCGCCACCGCCGCCGCCGCCGCCTCCCAACTCACCACCCTTCGCCACCACACGCCGCGCTTCCTCCGCCTCCGCCGCCGCCGCAGCGGCGCTCCTCCTCCTCGCGGCCTCCCCTCGGCCGCGCCCCGCCCGCGCCGACCCCGGCGGCGGAGGCGGCGAGGACATCGACGAGGCCCGCGTTGTGCGCCTCTTCCAGGAGGCGTCGCCGTCGGTGGTGTTCATCAAGGACCTCGTCGTCGGGCGGACGCCGGGACGGGGAGGCGGGCAAGCGGTGGAGGCGGAGGACGGCGAGGAGGGGGGCGCCACGGTGGAGGGGACCGGCTCTGGGTTCGTCTGGGACACCGCGGGCCACATTGTGACAAATTACCATGTGGTTGCAAAATTAGCTGGGGATGGATCTGCATTTCATCGCTGCAAGTGTTTCCTTTAGGTGTTATTGGAGGATTCTAGTGGGAATAGTTATTTGAAGGAAGGAAGGCTAGTAGGGTGTGATCCATCGTATGATCTTGCTGTT-CTGAAGGTTGATGTT-GATGGTGATAAGTTGAGGCCTGCTCTGATTGGAACATCAAAGGGCTTGCGAGTTGGGCAGAGCTGCT-TTGCCATTGGTAACCCT-T-AT-GGATATGAGCACA-CCCTAACTACTGGGGTGGTTAGTGGATT-GGGGAGGGAGATACCATCTCCCAATGGGAGGCCGA-TTCGTGGGGCTATACAGACAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCA-CTA-AT-TGACTCATATGGTCATGTAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAAACTTCGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATT-GTGTATGGAACATCTGTGAGCAATAGGTTTTGATTCTTCTGTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAATATATATACTTCTGCTGCTACTCGGATCAGTGCATTCAAAAGAACATCTGCTTAATGGTGATCGTACTAGAAACTTTAGAGAACAAATTAAAACGAAGCCGGAGCCGGAGTTCAGTATAAACCAGTAAGGAAGAAACTAACATATTTTTGGACATGCTCTGGTAATTCCTCTGTTGCTGAACTGATCCAATATCCATGAAGCATTTGCTGCTGAATGCTGGCTTCAAGGAAAGGAATTATCAGATGAGCCTGA] [+] EMBL AK067918 [GCGCGCGTCCAACGAGCGCCACTCCAGCCATGGCGGTCCACCCGCTGCTCCGCCTTCTCCTCCTCCGGCCACCGCCACCGCCGCCGCCGCCGCCTCCCAACTCACCACCCTTCGCCACCACACGCCGCGCTTCCTCCGCCTCCGCCGCCGCCGCAGCGGCGCTCCTCCTCCTCGCGGCCTCCCCTCGGCCGCGCCCCGCCCGCGCCGACCCCGGCGGCGGAGGCGGCGAGGACATCGACGAGGCCCGCGTTGTGCGCCTCTTCCAGGAGGCGTCGCCGTCGGTGGTGTTCATCAAGGACCTCGTCGTCGGGCGGACGCCGGGACGGGGAGGCGGGCAAGCGGTGGAGGCGGAGGACGGCGAGGAGGGGGGCGCCACGGTGGAGGGGACCGGCTCTGGGTTCGTCTGGGACACCGCGGGCCACATTGTGACAAATTACCATGTGGTTGCAAAATTAGCTGGGGATGGATCTGCATTTCATCGCTGCAAGTGTTTCCTTTAGGTGTTATTGGAGGATTCTAGTGGGAATAGTTATTTGAAGGAAGGAAGGCTAGTAGGGTGTGATCCATCGTATGATCTTGCTGTT CTGAAGGTTGATGTT GATGGTGATAAGTTGAGGCCTGCTCTGATTGGAACATCAAAGGGCTTGCGAGTTGGGCAGAGCTGCT TTGCCATTGGTAACCCT T AT GGATATGAGCACA CCCTAACTACTGGGGTGGTTAGTGGATT GGGGAGGGAGATACCATCTCCCAATGGGAGGCCGA TTCGTGGGGCTATACAGACAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCA CTA AT TGACTCATATGGTCATGTAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAAACTTCGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATT GTGTATGGAACATCTGTGAGCAATAGGTTTTGATTCTTCTGTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAATATATATACTTCTGCTGCTACTCGGATCAGTGCATTCAAAAGAACATCTGCTTAATGGTGATCGTACTAGAAACTTTAGAGAACAAATTAAAACGAAGCCGGAGCCGGAGTTCAGTATAAACCAGTAAGGAAGAAACTAACATATTTTTGGACATGCTCTGGTAATTCCTCTGTTGCTGAACTGATCCAATATCCATGAAGCATTTGCTGCTGAATGCTGGCTTCAAGGAAAGGAATTATCAGATGAGCCTGA] [+] EMBL BI811142 [ tcccactcCGTATGATCTGCCTGTTCCTGAA GTTGATTTTGGATGGTGATAA TTGA GCCTGCTCCGATTGGAACATCAAA GGCTTGCGA TTTGGCAGAGCTGCTGTCGCCATTGGTAACCCTGTGATGGGATATGAGCACACCCCTTACTACCGGGGTGATTAGTGGATTCGGGGAGGGAGATACCATCTCCCAATGGGAGCCCGATTTCGTGGGGCTATACAGACAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCACCTAGATGTGACTCATATGGTCATGTAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAAACTTCGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATTGGTGTATGGAACATCTGTGAcc ] consensusID : consensus_5042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence [GTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF334710 [GTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5042#0 GCGCGCGTCCAACGAGCGCCACTCCAGCCATGGCGGTCCACCCGCTGCTCCGCCTTCTCC 60 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 TCCTCCGGCCACCGCCACCGCCGCCGCCGCCGCCTCCCAACTCACCACCCTTCGCCACCA 120 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 CACGCCGCGCTTCCTCCGCCTCCGCCGCCGCCGCAGCGGCGCTCCTCCTCCTCGCGGCCT 180 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 CCCCTCGGCCGCGCCCCGCCCGCGCCGACCCCGGCGGCGGAGGCGGCGAGGACATCGACG 240 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 AGGCCCGCGTTGTGCGCCTCTTCCAGGAGGCGTCGCCGTCGGTGGTGTTCATCAAGGACC 300 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 TCGTCGTCGGGCGGACGCCGGGACGGGGAGGCGGGCAAGCGGTGGAGGCGGAGGACGGCG 360 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 AGGAGGGGGGCGCCACGGTGGAGGGGACCGGCTCTGGGTTCGTCTGGGACACCGCGGGCC 420 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 ACATTGTGACAAATTACCATGTGGTTGCAAAATTAGCTGGGGATGGATCTGCATTTCATC 480 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 GCTGCAAGTGTTTCCTTTAGGTGTTATTGGAGGATTCTAGTGGGAATAGTTATTTGAAGG 540 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 AAGGAAGGCTAGTAGGGTGTGATCCATCGTATGATCTTGCTGTTCTGAAGGTTGATGTTG 600 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 ATGGTGATAAGTTGAGGCCTGCTCTGATTGGAACATCAAAGGGCTTGCGAGTTGGGCAGA 660 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 GCTGCTTTGCCATTGGTAACCCTTATGGATATGAGCACACCCTAACTACTGGGGTGGTTA 720 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 GTGGATTGGGGAGGGAGATACCATCTCCCAATGGGAGGCCGATTCGTGGGGCTATACAGA 780 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 CAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCACTAATTGACTCATATGGTCATG 840 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 TAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAA 900 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 ACTTCGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATTGTGTATGGAA 960 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 CATCTGTGAGCAATAGGTTTTGATTCTTCTGTAGTACATTATCCGCTAGTAAATGCAAGG 1020 consensus_5042#1 ------------------------------GTAGTACATTATCCGCTAGTAAATGCAAGG 30 ****************************** consensus_5042#0 TCTCCCTCTGCCATGTTGATTGCTCTGAAATATATATACTTCTGCTGCTACTCGGATCAG 1080 consensus_5042#1 TCTCCCTCTGCCATGTTGATTGCTCTGAAATAAAAAAA-----------------AAAAA 73 ******************************** * * * * * consensus_5042#0 TGCATTCAAAAGAACATCTGCTTAATGGTGATCGTACTAGAAACTTTAGAGAACAAATTA 1140 consensus_5042#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 133 * **** ** * ** * * * *** * * ** *** * consensus_5042#0 AAACGAAGCCGGAGCCGGAGTTCAGTATAAACCAGTAAGGAAGAAACTAACATATTTTTG 1200 consensus_5042#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 179 *** ** * * * * *** * ** ** *** consensus_5042#0 GACATGCTCTGGTAATTCCTCTGTTGCTGAACTGATCCAATATCCATGAAGCATTTGCTG 1260 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 CTGAATGCTGGCTTCAAGGAAAGGAATTATCAGATGAGCCTGA 1303 consensus_5042#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||