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Oryza sativa
cluster # 5042 cluster # 5042       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5042#0 length = 1303 sequences # 2  
consensus_5042#1 length = 179 sequences # 1  

consensusID : consensus_5042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1303
fasta sequence
                              [GCGCGCGTCCAACGAGCGCCACTCCAGCCATGGCGGTCCACCCGCTGCTCCGCCTTCTCCTCCTCCGGCCACCGCCACCGCCGCCGCCGCCGCCTCCCAACTCACCACCCTTCGCCACCACACGCCGCGCTTCCTCCGCCTCCGCCGCCGCCGCAGCGGCGCTCCTCCTCCTCGCGGCCTCCCCTCGGCCGCGCCCCGCCCGCGCCGACCCCGGCGGCGGAGGCGGCGAGGACATCGACGAGGCCCGCGTTGTGCGCCTCTTCCAGGAGGCGTCGCCGTCGGTGGTGTTCATCAAGGACCTCGTCGTCGGGCGGACGCCGGGACGGGGAGGCGGGCAAGCGGTGGAGGCGGAGGACGGCGAGGAGGGGGGCGCCACGGTGGAGGGGACCGGCTCTGGGTTCGTCTGGGACACCGCGGGCCACATTGTGACAAATTACCATGTGGTTGCAAAATTAGCTGGGGATGGATCTGCATTTCATCGCTGCAAGTGTTTCCTTTAGGTGTTATTGGAGGATTCTAGTGGGAATAGTTATTTGAAGGAAGGAAGGCTAGTAGGGTGTGATCCATCGTATGATCTTGCTGTT-CTGAAGGTTGATGTT-GATGGTGATAAGTTGAGGCCTGCTCTGATTGGAACATCAAAGGGCTTGCGAGTTGGGCAGAGCTGCT-TTGCCATTGGTAACCCT-T-AT-GGATATGAGCACA-CCCTAACTACTGGGGTGGTTAGTGGATT-GGGGAGGGAGATACCATCTCCCAATGGGAGGCCGA-TTCGTGGGGCTATACAGACAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCA-CTA-AT-TGACTCATATGGTCATGTAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAAACTTCGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATT-GTGTATGGAACATCTGTGAGCAATAGGTTTTGATTCTTCTGTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAATATATATACTTCTGCTGCTACTCGGATCAGTGCATTCAAAAGAACATCTGCTTAATGGTGATCGTACTAGAAACTTTAGAGAACAAATTAAAACGAAGCCGGAGCCGGAGTTCAGTATAAACCAGTAAGGAAGAAACTAACATATTTTTGGACATGCTCTGGTAATTCCTCTGTTGCTGAACTGATCCAATATCCATGAAGCATTTGCTGCTGAATGCTGGCTTCAAGGAAAGGAATTATCAGATGAGCCTGA]

[+] EMBL AK067918             [GCGCGCGTCCAACGAGCGCCACTCCAGCCATGGCGGTCCACCCGCTGCTCCGCCTTCTCCTCCTCCGGCCACCGCCACCGCCGCCGCCGCCGCCTCCCAACTCACCACCCTTCGCCACCACACGCCGCGCTTCCTCCGCCTCCGCCGCCGCCGCAGCGGCGCTCCTCCTCCTCGCGGCCTCCCCTCGGCCGCGCCCCGCCCGCGCCGACCCCGGCGGCGGAGGCGGCGAGGACATCGACGAGGCCCGCGTTGTGCGCCTCTTCCAGGAGGCGTCGCCGTCGGTGGTGTTCATCAAGGACCTCGTCGTCGGGCGGACGCCGGGACGGGGAGGCGGGCAAGCGGTGGAGGCGGAGGACGGCGAGGAGGGGGGCGCCACGGTGGAGGGGACCGGCTCTGGGTTCGTCTGGGACACCGCGGGCCACATTGTGACAAATTACCATGTGGTTGCAAAATTAGCTGGGGATGGATCTGCATTTCATCGCTGCAAGTGTTTCCTTTAGGTGTTATTGGAGGATTCTAGTGGGAATAGTTATTTGAAGGAAGGAAGGCTAGTAGGGTGTGATCCATCGTATGATCTTGCTGTT CTGAAGGTTGATGTT GATGGTGATAAGTTGAGGCCTGCTCTGATTGGAACATCAAAGGGCTTGCGAGTTGGGCAGAGCTGCT TTGCCATTGGTAACCCT T AT GGATATGAGCACA CCCTAACTACTGGGGTGGTTAGTGGATT GGGGAGGGAGATACCATCTCCCAATGGGAGGCCGA TTCGTGGGGCTATACAGACAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCA CTA AT TGACTCATATGGTCATGTAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAAACTTCGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATT GTGTATGGAACATCTGTGAGCAATAGGTTTTGATTCTTCTGTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAATATATATACTTCTGCTGCTACTCGGATCAGTGCATTCAAAAGAACATCTGCTTAATGGTGATCGTACTAGAAACTTTAGAGAACAAATTAAAACGAAGCCGGAGCCGGAGTTCAGTATAAACCAGTAAGGAAGAAACTAACATATTTTTGGACATGCTCTGGTAATTCCTCTGTTGCTGAACTGATCCAATATCCATGAAGCATTTGCTGCTGAATGCTGGCTTCAAGGAAAGGAATTATCAGATGAGCCTGA]
[+] EMBL BI811142             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               tcccactcCGTATGATCTGCCTGTTCCTGAA GTTGATTTTGGATGGTGATAA TTGA GCCTGCTCCGATTGGAACATCAAA GGCTTGCGA TTTGGCAGAGCTGCTGTCGCCATTGGTAACCCTGTGATGGGATATGAGCACACCCCTTACTACCGGGGTGATTAGTGGATTCGGGGAGGGAGATACCATCTCCCAATGGGAGCCCGATTTCGTGGGGCTATACAGACAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCACCTAGATGTGACTCATATGGTCATGTAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAAACTTCGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATTGGTGTATGGAACATCTGTGAcc                                                                                                                                                                                                                                                                                                                                            ]


>consensus_5042#0 GCGCGCGTCCAACGAGCGCCACTCCAGCCATGGCGGTCCACCCGCTGCTCCGCCTTCTCC TCCTCCGGCCACCGCCACCGCCGCCGCCGCCGCCTCCCAACTCACCACCCTTCGCCACCA CACGCCGCGCTTCCTCCGCCTCCGCCGCCGCCGCAGCGGCGCTCCTCCTCCTCGCGGCCT CCCCTCGGCCGCGCCCCGCCCGCGCCGACCCCGGCGGCGGAGGCGGCGAGGACATCGACG AGGCCCGCGTTGTGCGCCTCTTCCAGGAGGCGTCGCCGTCGGTGGTGTTCATCAAGGACC TCGTCGTCGGGCGGACGCCGGGACGGGGAGGCGGGCAAGCGGTGGAGGCGGAGGACGGCG AGGAGGGGGGCGCCACGGTGGAGGGGACCGGCTCTGGGTTCGTCTGGGACACCGCGGGCC ACATTGTGACAAATTACCATGTGGTTGCAAAATTAGCTGGGGATGGATCTGCATTTCATC GCTGCAAGTGTTTCCTTTAGGTGTTATTGGAGGATTCTAGTGGGAATAGTTATTTGAAGG AAGGAAGGCTAGTAGGGTGTGATCCATCGTATGATCTTGCTGTTCTGAAGGTTGATGTTG ATGGTGATAAGTTGAGGCCTGCTCTGATTGGAACATCAAAGGGCTTGCGAGTTGGGCAGA GCTGCTTTGCCATTGGTAACCCTTATGGATATGAGCACACCCTAACTACTGGGGTGGTTA GTGGATTGGGGAGGGAGATACCATCTCCCAATGGGAGGCCGATTCGTGGGGCTATACAGA CAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCACTAATTGACTCATATGGTCATG TAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAA ACTTCGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATTGTGTATGGAA CATCTGTGAGCAATAGGTTTTGATTCTTCTGTAGTACATTATCCGCTAGTAAATGCAAGG TCTCCCTCTGCCATGTTGATTGCTCTGAAATATATATACTTCTGCTGCTACTCGGATCAG TGCATTCAAAAGAACATCTGCTTAATGGTGATCGTACTAGAAACTTTAGAGAACAAATTA AAACGAAGCCGGAGCCGGAGTTCAGTATAAACCAGTAAGGAAGAAACTAACATATTTTTG GACATGCTCTGGTAATTCCTCTGTTGCTGAACTGATCCAATATCCATGAAGCATTTGCTG CTGAATGCTGGCTTCAAGGAAAGGAATTATCAGATGAGCCTGA



consensusID : consensus_5042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence
                              [GTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF334710             [GTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_5042#1 GTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAA TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5042#0      GCGCGCGTCCAACGAGCGCCACTCCAGCCATGGCGGTCCACCCGCTGCTCCGCCTTCTCC 60
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      TCCTCCGGCCACCGCCACCGCCGCCGCCGCCGCCTCCCAACTCACCACCCTTCGCCACCA 120
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      CACGCCGCGCTTCCTCCGCCTCCGCCGCCGCCGCAGCGGCGCTCCTCCTCCTCGCGGCCT 180
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      CCCCTCGGCCGCGCCCCGCCCGCGCCGACCCCGGCGGCGGAGGCGGCGAGGACATCGACG 240
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      AGGCCCGCGTTGTGCGCCTCTTCCAGGAGGCGTCGCCGTCGGTGGTGTTCATCAAGGACC 300
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      TCGTCGTCGGGCGGACGCCGGGACGGGGAGGCGGGCAAGCGGTGGAGGCGGAGGACGGCG 360
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      AGGAGGGGGGCGCCACGGTGGAGGGGACCGGCTCTGGGTTCGTCTGGGACACCGCGGGCC 420
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      ACATTGTGACAAATTACCATGTGGTTGCAAAATTAGCTGGGGATGGATCTGCATTTCATC 480
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      GCTGCAAGTGTTTCCTTTAGGTGTTATTGGAGGATTCTAGTGGGAATAGTTATTTGAAGG 540
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      AAGGAAGGCTAGTAGGGTGTGATCCATCGTATGATCTTGCTGTTCTGAAGGTTGATGTTG 600
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      ATGGTGATAAGTTGAGGCCTGCTCTGATTGGAACATCAAAGGGCTTGCGAGTTGGGCAGA 660
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      GCTGCTTTGCCATTGGTAACCCTTATGGATATGAGCACACCCTAACTACTGGGGTGGTTA 720
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      GTGGATTGGGGAGGGAGATACCATCTCCCAATGGGAGGCCGATTCGTGGGGCTATACAGA 780
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      CAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCACTAATTGACTCATATGGTCATG 840
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      TAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAA 900
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      ACTTCGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATTGTGTATGGAA 960
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      CATCTGTGAGCAATAGGTTTTGATTCTTCTGTAGTACATTATCCGCTAGTAAATGCAAGG 1020
consensus_5042#1      ------------------------------GTAGTACATTATCCGCTAGTAAATGCAAGG 30
                                                    ******************************

consensus_5042#0      TCTCCCTCTGCCATGTTGATTGCTCTGAAATATATATACTTCTGCTGCTACTCGGATCAG 1080
consensus_5042#1      TCTCCCTCTGCCATGTTGATTGCTCTGAAATAAAAAAA-----------------AAAAA 73
                      ******************************** * * *                 *  * 

consensus_5042#0      TGCATTCAAAAGAACATCTGCTTAATGGTGATCGTACTAGAAACTTTAGAGAACAAATTA 1140
consensus_5042#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 133
                         *   **** ** *       **     *    *  * ***    * * ** ***  *

consensus_5042#0      AAACGAAGCCGGAGCCGGAGTTCAGTATAAACCAGTAAGGAAGAAACTAACATATTTTTG 1200
consensus_5042#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 179
                      ***  **     *     *    *  * ***  *  **  ** ***              

consensus_5042#0      GACATGCTCTGGTAATTCCTCTGTTGCTGAACTGATCCAATATCCATGAAGCATTTGCTG 1260
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      CTGAATGCTGGCTTCAAGGAAAGGAATTATCAGATGAGCCTGA 1303
consensus_5042#1      -------------------------------------------
                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)